Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_G22
(262 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CPW7|ZMAT2_MOUSE Zinc finger matrin type 2 >gi|5278353... 122 2e-28
sp|P34670|YO14_CAEEL Hypothetical zinc finger protein ZK686... 114 9e-26
sp|Q15911|ATBF1_HUMAN Alpha-fetoprotein enhancer binding pr... 33 0.20
sp|Q61329|ATBF1_MOUSE Alpha-fetoprotein enhancer binding pr... 33 0.20
sp|Q9H6B1|ZN659_HUMAN Zinc finger protein 659 32 0.45
sp|Q569K4|ZN533_HUMAN Zinc finger protein 533 32 0.45
sp|Q6AXX3|ZN659_RAT Zinc finger protein 659 32 0.45
sp|Q8BXJ8|ZN533_MOUSE Zinc finger protein 533 32 0.58
sp|Q6PBT9|ZN533_BRARE Zinc finger protein 533 32 0.58
sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2 (Spliceo... 30 1.3
>sp|Q9CPW7|ZMAT2_MOUSE Zinc finger matrin type 2
sp|Q96NC0|ZMAT2_HUMAN Zinc finger matrin type 2
Length = 199
Score = 122 bits (307), Expect = 2e-28
Identities = 56/87 (64%), Positives = 70/87 (80%)
Frame = +1
Query: 1 IKRDFLKPRDFAVYLEANLNKSQVISKSAPGNQQAGYYCEVCDCVVKDSINFLDHINGKK 180
+KR+ L+ RD+ V LE+ L K+ VI+K+ P ++ GYYC VCDCVVKDSINFLDHINGKK
Sbjct: 44 VKRELLRHRDYKVDLESKLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKK 103
Query: 181 HQRNQGMSMRIKRSSVDDVKNRFEFIK 261
HQRN GMSMR++RS++D VK RFE K
Sbjct: 104 HQRNLGMSMRVERSTLDQVKKRFEVNK 130
>sp|P34670|YO14_CAEEL Hypothetical zinc finger protein ZK686.4 in chromosome III
Length = 407
Score = 114 bits (284), Expect = 9e-26
Identities = 50/87 (57%), Positives = 69/87 (79%)
Frame = +1
Query: 1 IKRDFLKPRDFAVYLEANLNKSQVISKSAPGNQQAGYYCEVCDCVVKDSINFLDHINGKK 180
+KR+ L+ R++ V L++ + KS VI+K+ P + G+YC+VCDCVVKDSINFLDHINGK
Sbjct: 244 VKREMLQAREYKVDLDSKVGKSVVITKATPSAETGGFYCDVCDCVVKDSINFLDHINGKN 303
Query: 181 HQRNQGMSMRIKRSSVDDVKNRFEFIK 261
HQRN GMSM+ K+S+V DV+ RF+ +K
Sbjct: 304 HQRNIGMSMKTKKSTVADVRERFKLMK 330
>sp|Q15911|ATBF1_HUMAN Alpha-fetoprotein enhancer binding protein (AT motif-binding factor)
(AT-binding transcription factor 1)
Length = 3703
Score = 33.1 bits (74), Expect = 0.20
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 109 YYCEVCDCVVKDSINFLDHINGKKHQRNQGM 201
Y+C +C+ K +N + H+ KHQR++ +
Sbjct: 1088 YHCVLCNYSTKAKLNLIQHVRSMKHQRSESL 1118
>sp|Q61329|ATBF1_MOUSE Alpha-fetoprotein enhancer binding protein (AT motif-binding factor)
(AT-binding transcription factor 1)
Length = 3726
Score = 33.1 bits (74), Expect = 0.20
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 109 YYCEVCDCVVKDSINFLDHINGKKHQRNQGM 201
Y+C +C+ K +N + H+ KHQR++ +
Sbjct: 1089 YHCVLCNYSTKAKLNLIQHVRSMKHQRSESL 1119
>sp|Q9H6B1|ZN659_HUMAN Zinc finger protein 659
Length = 395
Score = 32.0 bits (71), Expect = 0.45
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 73 ISKSAPGNQQAGYYCEVCDCVVKDSINFLDHINGKKHQ 186
++K G Q ++CE+CD V HI+ ++H+
Sbjct: 255 VNKGNTGLQNKTFHCEICDVHVNSETQLKQHISSRRHK 292
>sp|Q569K4|ZN533_HUMAN Zinc finger protein 533
Length = 471
Score = 32.0 bits (71), Expect = 0.45
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 91 GNQQAGYYCEVCDCVVKDSINFLDHINGKKHQ-RNQGMSMRIKRS 222
G Q ++CE+CD V I HI+ ++H+ R G ++ K S
Sbjct: 342 GLQNKTFHCEICDVHVNSEIQLKQHISSRRHKDRVAGKPLKPKYS 386
>sp|Q6AXX3|ZN659_RAT Zinc finger protein 659
Length = 395
Score = 32.0 bits (71), Expect = 0.45
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 73 ISKSAPGNQQAGYYCEVCDCVVKDSINFLDHINGKKHQ 186
++K G Q ++CE+CD V HI+ ++H+
Sbjct: 255 VNKGNTGLQNKTFHCEICDVHVNSETQLKQHISSRRHK 292
>sp|Q8BXJ8|ZN533_MOUSE Zinc finger protein 533
Length = 482
Score = 31.6 bits (70), Expect = 0.58
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 91 GNQQAGYYCEVCDCVVKDSINFLDHINGKKHQ-RNQGMSMRIKRS 222
G Q ++CE+CD V I HI+ ++H+ R G ++ K S
Sbjct: 354 GLQNKMFHCEICDVHVNSEIQLKQHISSRRHKDRVAGKPLKPKYS 398
>sp|Q6PBT9|ZN533_BRARE Zinc finger protein 533
Length = 492
Score = 31.6 bits (70), Expect = 0.58
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 91 GNQQAGYYCEVCDCVVKDSINFLDHINGKKHQ 186
G Q ++CE+CD V I HI+ ++H+
Sbjct: 365 GLQNKTFHCEICDVHVNSEIQLKQHISSRRHK 396
>sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2 (Spliceosome associated protein 62)
(SAP 62) (SF3a66)
Length = 464
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 52 NLNKSQVISKSAPGNQQAGYYCEVCDCVVKDSINFLDHINGKKHQRN 192
++NK K N Y C++C + + ++L H GKKHQ N
Sbjct: 39 DINKDPYFMK----NHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTN 81
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,030,484
Number of Sequences: 369166
Number of extensions: 466544
Number of successful extensions: 1520
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1520
length of database: 68,354,980
effective HSP length: 57
effective length of database: 57,825,085
effective search space used: 1676927465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)