Planaria EST Database


DrC_00541

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00541
         (356 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P32300|OPRD_MOUSE  Delta-type opioid receptor (DOR-1) (K5...    32   0.58 
sp|P33533|OPRD_RAT  Delta-type opioid receptor (DOR-1) (Opio...    32   0.58 
sp|P79291|OPRD_PIG  Delta-type opioid receptor (DOR-1)             32   0.58 
sp|P41143|OPRD_HUMAN  Delta-type opioid receptor (DOR-1)           32   0.58 
sp|P41144|OPRK_CAVPO  Kappa-type opioid receptor (KOR-1)           31   0.76 
sp|P33534|OPRK_MOUSE  Kappa-type opioid receptor (KOR-1) (MS...    31   0.76 
sp|P34975|OPRK_RAT  Kappa-type opioid receptor (KOR-1)             31   0.76 
sp|P41145|OPRK_HUMAN  Kappa-type opioid receptor (KOR-1)           31   0.76 
sp|P36252|RPOC_THEMA  DNA-directed RNA polymerase beta' chai...    30   2.2  
sp|P42866|OPRM_MOUSE  Mu-type opioid receptor (MOR-1)              28   4.9  
>sp|P32300|OPRD_MOUSE Delta-type opioid receptor (DOR-1) (K56) (MSL-2)
          Length = 372

 Score = 31.6 bits (70), Expect = 0.58
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 4/34 (11%)
 Frame = -1

Query: 338 LICK----IDYLNVFLNLF*ITW*NVNNFISYCH 249
           L+CK    IDY N+F ++F +T  +V+ +I+ CH
Sbjct: 119 LLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCH 152
>sp|P33533|OPRD_RAT Delta-type opioid receptor (DOR-1) (Opioid receptor A)
          Length = 372

 Score = 31.6 bits (70), Expect = 0.58
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 4/34 (11%)
 Frame = -1

Query: 338 LICK----IDYLNVFLNLF*ITW*NVNNFISYCH 249
           L+CK    IDY N+F ++F +T  +V+ +I+ CH
Sbjct: 119 LLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCH 152
>sp|P79291|OPRD_PIG Delta-type opioid receptor (DOR-1)
          Length = 228

 Score = 31.6 bits (70), Expect = 0.58
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 4/34 (11%)
 Frame = -1

Query: 338 LICK----IDYLNVFLNLF*ITW*NVNNFISYCH 249
           L+CK    IDY N+F ++F +T  +V+ +I+ CH
Sbjct: 47  LLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCH 80
>sp|P41143|OPRD_HUMAN Delta-type opioid receptor (DOR-1)
          Length = 372

 Score = 31.6 bits (70), Expect = 0.58
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 4/34 (11%)
 Frame = -1

Query: 338 LICK----IDYLNVFLNLF*ITW*NVNNFISYCH 249
           L+CK    IDY N+F ++F +T  +V+ +I+ CH
Sbjct: 119 LLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCH 152
>sp|P41144|OPRK_CAVPO Kappa-type opioid receptor (KOR-1)
          Length = 380

 Score = 31.2 bits (69), Expect = 0.76
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -1

Query: 338 LICKIDYLNVFLNLF*ITW*NVNNFISYCH 249
           ++  IDY N+F ++F +T  +V+ +I+ CH
Sbjct: 133 IVISIDYYNMFTSIFTLTMMSVDRYIAVCH 162
>sp|P33534|OPRK_MOUSE Kappa-type opioid receptor (KOR-1) (MSL-1)
          Length = 380

 Score = 31.2 bits (69), Expect = 0.76
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -1

Query: 338 LICKIDYLNVFLNLF*ITW*NVNNFISYCH 249
           ++  IDY N+F ++F +T  +V+ +I+ CH
Sbjct: 133 IVISIDYYNMFTSIFTLTMMSVDRYIAVCH 162
>sp|P34975|OPRK_RAT Kappa-type opioid receptor (KOR-1)
          Length = 380

 Score = 31.2 bits (69), Expect = 0.76
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -1

Query: 338 LICKIDYLNVFLNLF*ITW*NVNNFISYCH 249
           ++  IDY N+F ++F +T  +V+ +I+ CH
Sbjct: 133 IVISIDYYNMFTSIFTLTMMSVDRYIAVCH 162
>sp|P41145|OPRK_HUMAN Kappa-type opioid receptor (KOR-1)
          Length = 380

 Score = 31.2 bits (69), Expect = 0.76
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -1

Query: 338 LICKIDYLNVFLNLF*ITW*NVNNFISYCH 249
           ++  IDY N+F ++F +T  +V+ +I+ CH
Sbjct: 133 IVISIDYYNMFTSIFTLTMMSVDRYIAVCH 162
>sp|P36252|RPOC_THEMA DNA-directed RNA polymerase beta' chain (RNAP beta' subunit)
           (Transcriptase beta' chain) (RNA polymerase beta'
           subunit)
          Length = 1690

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +3

Query: 75  EGRIENDIPVVTIEGVDYPASEASDVKVG----EGDSCSVCHIYP 197
           E R END P+V I  +D   S+ + +KVG    E +  +   IYP
Sbjct: 412 EERTENDRPIVVITDIDPEVSKETGLKVGDIVTENEYEAYLQIYP 456
>sp|P42866|OPRM_MOUSE Mu-type opioid receptor (MOR-1)
          Length = 398

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -1

Query: 338 LICKIDYLNVFLNLF*ITW*NVNNFISYCH 249
           ++  IDY N+F ++F +   +V+ +I+ CH
Sbjct: 142 IVISIDYYNMFTSIFTLCTMSVDRYIAVCH 171
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,605,421
Number of Sequences: 369166
Number of extensions: 765148
Number of successful extensions: 1809
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1808
length of database: 68,354,980
effective HSP length: 86
effective length of database: 52,467,770
effective search space used: 1678968640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00541

  1. Dr_sW_014_A06
  2. Dr_sW_019_K05
  3. Dr_sW_015_C13
  4. Dr_sW_015_E04
  5. Dr_sW_009_F02
  6. Dr_sW_019_G05
  7. Dr_sW_023_J05