Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_F02
(335 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36252|RPOC_THEMA DNA-directed RNA polymerase beta' chai... 30 2.3
sp|P32300|OPRD_MOUSE Delta-type opioid receptor (DOR-1) (K5... 28 5.1
sp|P33533|OPRD_RAT Delta-type opioid receptor (DOR-1) (Opio... 28 5.1
sp|P79291|OPRD_PIG Delta-type opioid receptor (DOR-1) 28 5.1
sp|P41143|OPRD_HUMAN Delta-type opioid receptor (DOR-1) 28 5.1
sp|P41144|OPRK_CAVPO Kappa-type opioid receptor (KOR-1) 28 6.6
sp|P33534|OPRK_MOUSE Kappa-type opioid receptor (KOR-1) (MS... 28 6.6
sp|P34975|OPRK_RAT Kappa-type opioid receptor (KOR-1) 28 6.6
sp|P41145|OPRK_HUMAN Kappa-type opioid receptor (KOR-1) 28 6.6
>sp|P36252|RPOC_THEMA DNA-directed RNA polymerase beta' chain (RNAP beta' subunit)
(Transcriptase beta' chain) (RNA polymerase beta'
subunit)
Length = 1690
Score = 29.6 bits (65), Expect = 2.3
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +2
Query: 56 EGRIENDIPVVTIEGVDYPASEASDVKVG----EGDSCSVCHIYP 178
E R END P+V I +D S+ + +KVG E + + IYP
Sbjct: 412 EERTENDRPIVVITDIDPEVSKETGLKVGDIVTENEYEAYLQIYP 456
>sp|P32300|OPRD_MOUSE Delta-type opioid receptor (DOR-1) (K56) (MSL-2)
Length = 372
Score = 28.5 bits (62), Expect = 5.1
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Frame = -2
Query: 319 LICK----IDYLNVFLNLS*ITR*NVNNFISYCH 230
L+CK IDY N+F ++ +T +V+ +I+ CH
Sbjct: 119 LLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCH 152
>sp|P33533|OPRD_RAT Delta-type opioid receptor (DOR-1) (Opioid receptor A)
Length = 372
Score = 28.5 bits (62), Expect = 5.1
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Frame = -2
Query: 319 LICK----IDYLNVFLNLS*ITR*NVNNFISYCH 230
L+CK IDY N+F ++ +T +V+ +I+ CH
Sbjct: 119 LLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCH 152
>sp|P79291|OPRD_PIG Delta-type opioid receptor (DOR-1)
Length = 228
Score = 28.5 bits (62), Expect = 5.1
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Frame = -2
Query: 319 LICK----IDYLNVFLNLS*ITR*NVNNFISYCH 230
L+CK IDY N+F ++ +T +V+ +I+ CH
Sbjct: 47 LLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCH 80
>sp|P41143|OPRD_HUMAN Delta-type opioid receptor (DOR-1)
Length = 372
Score = 28.5 bits (62), Expect = 5.1
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Frame = -2
Query: 319 LICK----IDYLNVFLNLS*ITR*NVNNFISYCH 230
L+CK IDY N+F ++ +T +V+ +I+ CH
Sbjct: 119 LLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCH 152
>sp|P41144|OPRK_CAVPO Kappa-type opioid receptor (KOR-1)
Length = 380
Score = 28.1 bits (61), Expect = 6.6
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -2
Query: 319 LICKIDYLNVFLNLS*ITR*NVNNFISYCH 230
++ IDY N+F ++ +T +V+ +I+ CH
Sbjct: 133 IVISIDYYNMFTSIFTLTMMSVDRYIAVCH 162
>sp|P33534|OPRK_MOUSE Kappa-type opioid receptor (KOR-1) (MSL-1)
Length = 380
Score = 28.1 bits (61), Expect = 6.6
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -2
Query: 319 LICKIDYLNVFLNLS*ITR*NVNNFISYCH 230
++ IDY N+F ++ +T +V+ +I+ CH
Sbjct: 133 IVISIDYYNMFTSIFTLTMMSVDRYIAVCH 162
>sp|P34975|OPRK_RAT Kappa-type opioid receptor (KOR-1)
Length = 380
Score = 28.1 bits (61), Expect = 6.6
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -2
Query: 319 LICKIDYLNVFLNLS*ITR*NVNNFISYCH 230
++ IDY N+F ++ +T +V+ +I+ CH
Sbjct: 133 IVISIDYYNMFTSIFTLTMMSVDRYIAVCH 162
>sp|P41145|OPRK_HUMAN Kappa-type opioid receptor (KOR-1)
Length = 380
Score = 28.1 bits (61), Expect = 6.6
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -2
Query: 319 LICKIDYLNVFLNLS*ITR*NVNNFISYCH 230
++ IDY N+F ++ +T +V+ +I+ CH
Sbjct: 133 IVISIDYYNMFTSIFTLTMMSVDRYIAVCH 162
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,751,066
Number of Sequences: 369166
Number of extensions: 720565
Number of successful extensions: 1738
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1737
length of database: 68,354,980
effective HSP length: 79
effective length of database: 53,760,915
effective search space used: 1720349280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)