Planaria EST Database

DrC_00540

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00540
         (998 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9WUH1|PL6_MOUSE  PL6 protein homolog                          204   4e-52
sp|Q12893|PL6_HUMAN  PL6 protein (Placental protein 6) (PP6)      198   2e-50
sp|O42826|PDH1_SCHPO  Protein pdh1 precursor                       36   0.20 
sp|P39602|YWCD_BACSU  Hypothetical protein ywcD                    33   1.3  
sp|P58530|SOTB_SALTI  Probable sugar efflux transporter            33   1.7  
sp|P58531|SOTB_SALTY  Probable sugar efflux transporter            33   1.7  
sp|P22579|SIN3_YEAST  Paired amphipathic helix protein SIN3        32   3.7  
sp|Q60294|YZ39_METJA  Hypothetical UPF0252 protein MJECL39         31   6.3  
sp|Q9ZDE9|Y382_RICPR  Hypothetical protein RP382                   31   6.3  
sp|O28044|YM39_ARCFU  Hypothetical protein AF2239                  30   8.2  

>sp|Q9WUH1|PL6_MOUSE PL6 protein homolog
          Length = 350

 Score =  204 bits (518), Expect = 4e-52
 Identities = 113/289 (39%), Positives = 169/289 (58%), Gaps = 5/289 (1%)
 Frame = +3

Query: 3   LTIIPAYILPPKFWIFSLVTFSFFESRIFFILLDIISVFFIEKLLLPVWGWLELIKFCAL 182
           L + P Y+ PP FWI++L T    E  ++ + + + +V    +LL P+WG LEL+ F ++
Sbjct: 45  LAVTPGYLFPPNFWIWTLATHGLMEQHVWDVAISLATVVVAGRLLEPLWGALELLIFFSV 104

Query: 183 VNCLSAISTVIIYITFYAMTYNEVYLFHTKIHGMAPLLAALTVSTRQLMGDNVLMNLKFG 362
           VN    +   + Y+  Y  ++N VYLF  +IHG    L  + V+ +Q MGD V+  L+  
Sbjct: 105 VNVSVGLLGALAYLLTYMASFNLVYLFTIRIHGALGFLGGVLVALKQTMGDCVV--LRVP 162

Query: 363 KFRNKHISIAFLLVLAILTVSNLISSSVLIMFINGLCISWGYLRFFQKHSNGNVGDLSEK 542
           + R   + +  L +L +L ++ L+ S  L  +  GL  SW YLRF+Q+HS G  GD+++ 
Sbjct: 163 QVRVSVVPMLLLALLLLLRLATLLQSPALASYGFGLLSSWVYLRFYQRHSRGR-GDMADH 221

Query: 543 FAFSEFFPYHLEGPVSIVSNSIFGLLIYLKICKKIDRRYDXXXXXXXXXXXXXGDLVDSE 722
           FAF+ FFP  L+  V +++N + GLL+ +KIC+K  +RYD              D  D+E
Sbjct: 222 FAFATFFPEILQPVVGLLANLVHGLLVKVKICQKTVKRYDVGAPSSITISLPGTDPQDAE 281

Query: 723 RRKQLALKALNERLCQKEKTMAWPSMDDDKD---LKTKA--PLNEESKP 854
           RR+QLALKALNERL + E   AWPSMDDD++    KT +  PL E S P
Sbjct: 282 RRRQLALKALNERLKRVEDQSAWPSMDDDEEEAGAKTDSPLPLEEASTP 330

>sp|Q12893|PL6_HUMAN PL6 protein (Placental protein 6) (PP6)
          Length = 351

 Score =  198 bits (504), Expect = 2e-50
 Identities = 108/287 (37%), Positives = 164/287 (57%), Gaps = 3/287 (1%)
 Frame = +3

Query: 3   LTIIPAYILPPKFWIFSLVTFSFFESRIFFILLDIISVFFIEKLLLPVWGWLELIKFCAL 182
           L + P Y+ PP FWI++L T    E  ++ + + + +V    +LL P+WG LEL+ F ++
Sbjct: 45  LAVTPGYLFPPNFWIWTLATHGLMEQHVWDVAISLTTVVVAGRLLEPLWGALELLIFFSV 104

Query: 183 VNCLSAISTVIIYITFYAMTYNEVYLFHTKIHGMAPLLAALTVSTRQLMGDNVLMNLKFG 362
           VN    +     Y+  Y  ++N VYLF  +IHG    L  + V+ +Q MGD V+  L+  
Sbjct: 105 VNVSVGLLGAFAYLLTYMASFNLVYLFTVRIHGALGFLGGVLVALKQTMGDCVV--LRVP 162

Query: 363 KFRNKHISIAFLLVLAILTVSNLISSSVLIMFINGLCISWGYLRFFQKHSNGNVGDLSEK 542
           + R   + +  L +L +L ++ L+ S  L  +  GL  SW YLRF+Q+HS G  GD+++ 
Sbjct: 163 QVRVSVMPMLLLALLLLLRLATLLQSPALASYGFGLLSSWVYLRFYQRHSRGR-GDMADH 221

Query: 543 FAFSEFFPYHLEGPVSIVSNSIFGLLIYLKICKKIDRRYDXXXXXXXXXXXXXGDLVDSE 722
           FAF+ FFP  L+  V +++N +  LL+ +KIC+K  +RYD              D  D+E
Sbjct: 222 FAFATFFPEILQPVVGLLANLVHSLLVKVKICQKTVKRYDVGAPSSITISLPGTDPQDAE 281

Query: 723 RRKQLALKALNERLCQKEKTMAWPSMDDDKD---LKTKAPLNEESKP 854
           RR+QLALKALNERL + E    WPSMDDD++    K  +PL  +  P
Sbjct: 282 RRRQLALKALNERLKRVEDQSIWPSMDDDEEESGAKVDSPLPSDKAP 328

>sp|O42826|PDH1_SCHPO Protein pdh1 precursor
          Length = 226

 Score = 35.8 bits (81), Expect = 0.20
 Identities = 38/164 (23%), Positives = 75/164 (45%), Gaps = 5/164 (3%)
 Frame = +3

Query: 21  YILPPKFWIF--SLVTFSFFESRIFFILLDII--SVFFIEKLLLPVWGWLELIKFCALVN 188
           +++P   ++F  +++T SF ++ +F +L  I+  SV+ +E  +   WG  E + FC  + 
Sbjct: 48  HLVPNALFLFPWTIITTSFVDANVFTLLSSILILSVYGVE--IERSWGHKEYLLFCQFLT 105

Query: 189 CLSAISTVIIYITFYAMTYNEVYLFHTKIHGMAPLLAALTVSTRQLMG-DNVLMNLKFGK 365
            +  I+ +I     Y +T +  YL    I     + A +  +  QL        + KF  
Sbjct: 106 VIPNIAVLIPCFIAYKIT-DSHYLLVAIIQSTTAIQAGILTAWYQLYSCKKEESSNKFLC 164

Query: 366 FRNKHISIAFLLVLAILTVSNLISSSVLIMFINGLCISWGYLRF 497
             +K++   FL +  +  V      +   + ++G CIS  Y+ F
Sbjct: 165 PLSKYLIYLFLSI-HLFYVFQSFPWTYFCLAVSGTCISELYVLF 207

>sp|P39602|YWCD_BACSU Hypothetical protein ywcD
          Length = 127

 Score = 33.1 bits (74), Expect = 1.3
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
 Frame = +3

Query: 201 ISTVIIYITFYAMTYNEVYLFHTKIHGMAPLLAALT----VSTRQLMGDNVLMNLKFGKF 368
           +S +  YIT      N++Y+F  K H +  LL  LT    V    L  D  +M +  G+F
Sbjct: 38  LSVLFAYIT------NKLYVFQQKTHDLQSLLKELTAFFSVRVLSLGIDLGMMIILVGQF 91

Query: 369 RNKHISIAFLLVLAILTVSNLISSSVLI 452
            N + ++A +L  A++ V N ++S  L+
Sbjct: 92  -NTNETLAKILDNAVIVVVNYVASKWLV 118

>sp|P58530|SOTB_SALTI Probable sugar efflux transporter
          Length = 396

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 21/81 (25%), Positives = 39/81 (48%)
 Frame = +3

Query: 192 LSAISTVIIYITFYAMTYNEVYLFHTKIHGMAPLLAALTVSTRQLMGDNVLMNLKFGKFR 371
           +S     ++ +T +   Y+ +  F   + G++   A  TV    L G  ++ +L FGK  
Sbjct: 212 MSLYVLTVVVVTAHYTAYSYIEPFVQNVAGLSANFA--TVLLLILGGAGIIGSLVFGKLG 269

Query: 372 NKHISIAFLLVLAILTVSNLI 434
           N+H S    + +A+L V  L+
Sbjct: 270 NRHASSLVSIAIALLVVCLLL 290

>sp|P58531|SOTB_SALTY Probable sugar efflux transporter
          Length = 396

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 21/81 (25%), Positives = 39/81 (48%)
 Frame = +3

Query: 192 LSAISTVIIYITFYAMTYNEVYLFHTKIHGMAPLLAALTVSTRQLMGDNVLMNLKFGKFR 371
           +S     ++ +T +   Y+ +  F   + G++   A  TV    L G  ++ +L FGK  
Sbjct: 212 MSLYVLTVVVVTAHYTAYSYIEPFVQNVAGLSANFA--TVLLLILGGAGIIGSLVFGKLG 269

Query: 372 NKHISIAFLLVLAILTVSNLI 434
           N+H S    + +A+L V  L+
Sbjct: 270 NRHASSLVSIAIALLVVCLLL 290

>sp|P22579|SIN3_YEAST Paired amphipathic helix protein SIN3
          Length = 1536

 Score = 31.6 bits (70), Expect = 3.7
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +3

Query: 837 NEESKPKSLSALINEQYQSLPKRSDIEANPSV 932
           +++  P+S+S + N QY  +P R +I+ +PS+
Sbjct: 614 HQQQHPQSISPIANTQYGDIPVRPEIDLDPSI 645

>sp|Q60294|YZ39_METJA Hypothetical UPF0252 protein MJECL39
          Length = 351

 Score = 30.8 bits (68), Expect = 6.3
 Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
 Frame = +3

Query: 42  WIFSLVTFSFFESRIFFILLDIISVFFIEKLLLPVWGWLELIKFC------ALVNCLSAI 203
           W  S + + + +S +++ +   I V  +  +   VW W E + FC       ++ CL  I
Sbjct: 41  WEDSNIRYCYEKSNVYYFITFFIIVGLVWAIFPEVWLWCEQV-FCISPTIHIIICCLYFI 99

Query: 204 STVIIYITFYAMTYNEVYLFHT 269
            T+I+++    +    ++L+ T
Sbjct: 100 ITIILFLFLCGVVGTFLHLWAT 121

>sp|Q9ZDE9|Y382_RICPR Hypothetical protein RP382
          Length = 510

 Score = 30.8 bits (68), Expect = 6.3
 Identities = 33/166 (19%), Positives = 65/166 (39%), Gaps = 26/166 (15%)
 Frame = +3

Query: 69  FFESRIF----FILLDIISVFFIEKLLLPVWGWLELIKFCALVNCLSAISTVIIYITFYA 236
           F   RIF     I +++  + ++  +   VWG    ++             +   +TFY 
Sbjct: 46  FLNQRIFKSALIIHVNLSILIWLLSITASVWGNETSLRLVKRRGIFIPFGLLREIVTFYT 105

Query: 237 MTYNEVYLFHTKIHGMAPLLAALTVSTRQLMGDNVLMNLKFGKFRNKHISIAFLLVLAI- 413
              N+V   + K+   A LL A++     L G N + N       N    I F+L L++ 
Sbjct: 106 FDRNDVLYIYPKLAFFATLLIAIS----PLAGYNTVTNNYIPMLAN----IVFILGLSLF 157

Query: 414 -----------------LTVSNLIS----SSVLIMFINGLCISWGY 488
                            + ++NL++    S++++  ++ +C  W Y
Sbjct: 158 GVTLLLYAINILYLFDWMKLNNLVNVTVFSTIIMFILSFVCFGWSY 203

>sp|O28044|YM39_ARCFU Hypothetical protein AF2239
          Length = 356

 Score = 30.4 bits (67), Expect = 8.2
 Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
 Frame = +3

Query: 54  LVTFSFFESRIFFILLDIISVFFIEKLLLPVWGWLELIKFCALVNCLSAISTVIIYIT-- 227
           L T S+FESR    L  +     +  L L +    E ++     + L A + VI ++   
Sbjct: 214 LETISYFESRFEQTLSGVRDALDVVHLRLEMLRGKENLELQKRTSALQAAAAVIEFVAVF 273

Query: 228 FYAMTYNEVYLFHTKI-HGMA-PLLAALT---VSTRQLMGDNVLMNLKFGKFRNKHISIA 392
           +Y+M   E +L  T++ H ++  LLAA T   V   + +GD +       K     +++A
Sbjct: 274 YYSMKIWEAFLPVTEMPHWLSFSLLAAFTFTVVVYTEALGDYIRERKPSSKLVLLTLTLA 333

Query: 393 FLLVLAILTVSNLISSS 443
            L++L + T+  L S++
Sbjct: 334 ILVIL-MATLPTLFSAA 349

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,150,168
Number of Sequences: 369166
Number of extensions: 2175193
Number of successful extensions: 6168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6163
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10574716295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00540

  1. Dr_sW_013_P13
  2. Dr_sW_022_G01