Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_P13
(789 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9WUH1|PL6_MOUSE PL6 protein homolog 182 7e-46
sp|Q12893|PL6_HUMAN PL6 protein (Placental protein 6) (PP6) 179 1e-44
sp|O42826|PDH1_SCHPO Protein pdh1 precursor 36 0.14
sp|P39602|YWCD_BACSU Hypothetical protein ywcD 33 0.89
sp|P58530|SOTB_SALTI Probable sugar efflux transporter 33 1.2
sp|P58531|SOTB_SALTY Probable sugar efflux transporter 33 1.2
sp|Q60294|YZ39_METJA Hypothetical UPF0252 protein MJECL39 31 4.4
sp|Q9ZDE9|Y382_RICPR Hypothetical protein RP382 31 4.4
sp|O28044|YM39_ARCFU Hypothetical protein AF2239 30 5.8
sp|P40527|ATC7_YEAST Probable phospholipid-transporting ATP... 30 7.5
>sp|Q9WUH1|PL6_MOUSE PL6 protein homolog
Length = 350
Score = 182 bits (463), Expect = 7e-46
Identities = 99/262 (37%), Positives = 152/262 (58%)
Frame = +3
Query: 3 LTIIPAYILPPKFWIFSLVTFSFFESRIFFILLDIISVFFIEKLLLPVWGWLELIKFCAL 182
L + P Y+ PP FWI++L T E ++ + + + +V +LL P+WG LEL+ F ++
Sbjct: 45 LAVTPGYLFPPNFWIWTLATHGLMEQHVWDVAISLATVVVAGRLLEPLWGALELLIFFSV 104
Query: 183 VNCLSAISTVIIYITFYAMTYNEVYLFHTKIHGMAPLLAALTVSTRQLMGDNVLMNLKFG 362
VN + + Y+ Y ++N VYLF +IHG L + V+ +Q MGD V+ L+
Sbjct: 105 VNVSVGLLGALAYLLTYMASFNLVYLFTIRIHGALGFLGGVLVALKQTMGDCVV--LRVP 162
Query: 363 KFRNKHISIAFLLVLAILTVSNLISSSVLIMFINGLCISWGYLRFFQKHSNGNVGDLSEK 542
+ R + + L +L +L ++ L+ S L + GL SW YLRF+Q+HS G GD+++
Sbjct: 163 QVRVSVVPMLLLALLLLLRLATLLQSPALASYGFGLLSSWVYLRFYQRHSRGR-GDMADH 221
Query: 543 FAFSEFFPYHLEGPVSIVSNSIFGLLIYLKICKKIDRRYDXXXXXXXXXXXXXGDLVDSE 722
FAF+ FFP L+ V +++N + GLL+ +KIC+K +RYD D D+E
Sbjct: 222 FAFATFFPEILQPVVGLLANLVHGLLVKVKICQKTVKRYDVGAPSSITISLPGTDPQDAE 281
Query: 723 RRKQLALKALNERLCQKEKTMA 788
RR+QLALKALNERL + E A
Sbjct: 282 RRRQLALKALNERLKRVEDQSA 303
>sp|Q12893|PL6_HUMAN PL6 protein (Placental protein 6) (PP6)
Length = 351
Score = 179 bits (453), Expect = 1e-44
Identities = 97/258 (37%), Positives = 149/258 (57%)
Frame = +3
Query: 3 LTIIPAYILPPKFWIFSLVTFSFFESRIFFILLDIISVFFIEKLLLPVWGWLELIKFCAL 182
L + P Y+ PP FWI++L T E ++ + + + +V +LL P+WG LEL+ F ++
Sbjct: 45 LAVTPGYLFPPNFWIWTLATHGLMEQHVWDVAISLTTVVVAGRLLEPLWGALELLIFFSV 104
Query: 183 VNCLSAISTVIIYITFYAMTYNEVYLFHTKIHGMAPLLAALTVSTRQLMGDNVLMNLKFG 362
VN + Y+ Y ++N VYLF +IHG L + V+ +Q MGD V+ L+
Sbjct: 105 VNVSVGLLGAFAYLLTYMASFNLVYLFTVRIHGALGFLGGVLVALKQTMGDCVV--LRVP 162
Query: 363 KFRNKHISIAFLLVLAILTVSNLISSSVLIMFINGLCISWGYLRFFQKHSNGNVGDLSEK 542
+ R + + L +L +L ++ L+ S L + GL SW YLRF+Q+HS G GD+++
Sbjct: 163 QVRVSVMPMLLLALLLLLRLATLLQSPALASYGFGLLSSWVYLRFYQRHSRGR-GDMADH 221
Query: 543 FAFSEFFPYHLEGPVSIVSNSIFGLLIYLKICKKIDRRYDXXXXXXXXXXXXXGDLVDSE 722
FAF+ FFP L+ V +++N + LL+ +KIC+K +RYD D D+E
Sbjct: 222 FAFATFFPEILQPVVGLLANLVHSLLVKVKICQKTVKRYDVGAPSSITISLPGTDPQDAE 281
Query: 723 RRKQLALKALNERLCQKE 776
RR+QLALKALNERL + E
Sbjct: 282 RRRQLALKALNERLKRVE 299
>sp|O42826|PDH1_SCHPO Protein pdh1 precursor
Length = 226
Score = 35.8 bits (81), Expect = 0.14
Identities = 38/164 (23%), Positives = 75/164 (45%), Gaps = 5/164 (3%)
Frame = +3
Query: 21 YILPPKFWIF--SLVTFSFFESRIFFILLDII--SVFFIEKLLLPVWGWLELIKFCALVN 188
+++P ++F +++T SF ++ +F +L I+ SV+ +E + WG E + FC +
Sbjct: 48 HLVPNALFLFPWTIITTSFVDANVFTLLSSILILSVYGVE--IERSWGHKEYLLFCQFLT 105
Query: 189 CLSAISTVIIYITFYAMTYNEVYLFHTKIHGMAPLLAALTVSTRQLMG-DNVLMNLKFGK 365
+ I+ +I Y +T + YL I + A + + QL + KF
Sbjct: 106 VIPNIAVLIPCFIAYKIT-DSHYLLVAIIQSTTAIQAGILTAWYQLYSCKKEESSNKFLC 164
Query: 366 FRNKHISIAFLLVLAILTVSNLISSSVLIMFINGLCISWGYLRF 497
+K++ FL + + V + + ++G CIS Y+ F
Sbjct: 165 PLSKYLIYLFLSI-HLFYVFQSFPWTYFCLAVSGTCISELYVLF 207
>sp|P39602|YWCD_BACSU Hypothetical protein ywcD
Length = 127
Score = 33.1 bits (74), Expect = 0.89
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Frame = +3
Query: 201 ISTVIIYITFYAMTYNEVYLFHTKIHGMAPLLAALT----VSTRQLMGDNVLMNLKFGKF 368
+S + YIT N++Y+F K H + LL LT V L D +M + G+F
Sbjct: 38 LSVLFAYIT------NKLYVFQQKTHDLQSLLKELTAFFSVRVLSLGIDLGMMIILVGQF 91
Query: 369 RNKHISIAFLLVLAILTVSNLISSSVLI 452
N + ++A +L A++ V N ++S L+
Sbjct: 92 -NTNETLAKILDNAVIVVVNYVASKWLV 118
>sp|P58530|SOTB_SALTI Probable sugar efflux transporter
Length = 396
Score = 32.7 bits (73), Expect = 1.2
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = +3
Query: 192 LSAISTVIIYITFYAMTYNEVYLFHTKIHGMAPLLAALTVSTRQLMGDNVLMNLKFGKFR 371
+S ++ +T + Y+ + F + G++ A TV L G ++ +L FGK
Sbjct: 212 MSLYVLTVVVVTAHYTAYSYIEPFVQNVAGLSANFA--TVLLLILGGAGIIGSLVFGKLG 269
Query: 372 NKHISIAFLLVLAILTVSNLI 434
N+H S + +A+L V L+
Sbjct: 270 NRHASSLVSIAIALLVVCLLL 290
>sp|P58531|SOTB_SALTY Probable sugar efflux transporter
Length = 396
Score = 32.7 bits (73), Expect = 1.2
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = +3
Query: 192 LSAISTVIIYITFYAMTYNEVYLFHTKIHGMAPLLAALTVSTRQLMGDNVLMNLKFGKFR 371
+S ++ +T + Y+ + F + G++ A TV L G ++ +L FGK
Sbjct: 212 MSLYVLTVVVVTAHYTAYSYIEPFVQNVAGLSANFA--TVLLLILGGAGIIGSLVFGKLG 269
Query: 372 NKHISIAFLLVLAILTVSNLI 434
N+H S + +A+L V L+
Sbjct: 270 NRHASSLVSIAIALLVVCLLL 290
>sp|Q60294|YZ39_METJA Hypothetical UPF0252 protein MJECL39
Length = 351
Score = 30.8 bits (68), Expect = 4.4
Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Frame = +3
Query: 42 WIFSLVTFSFFESRIFFILLDIISVFFIEKLLLPVWGWLELIKFC------ALVNCLSAI 203
W S + + + +S +++ + I V + + VW W E + FC ++ CL I
Sbjct: 41 WEDSNIRYCYEKSNVYYFITFFIIVGLVWAIFPEVWLWCEQV-FCISPTIHIIICCLYFI 99
Query: 204 STVIIYITFYAMTYNEVYLFHT 269
T+I+++ + ++L+ T
Sbjct: 100 ITIILFLFLCGVVGTFLHLWAT 121
>sp|Q9ZDE9|Y382_RICPR Hypothetical protein RP382
Length = 510
Score = 30.8 bits (68), Expect = 4.4
Identities = 33/166 (19%), Positives = 65/166 (39%), Gaps = 26/166 (15%)
Frame = +3
Query: 69 FFESRIF----FILLDIISVFFIEKLLLPVWGWLELIKFCALVNCLSAISTVIIYITFYA 236
F RIF I +++ + ++ + VWG ++ + +TFY
Sbjct: 46 FLNQRIFKSALIIHVNLSILIWLLSITASVWGNETSLRLVKRRGIFIPFGLLREIVTFYT 105
Query: 237 MTYNEVYLFHTKIHGMAPLLAALTVSTRQLMGDNVLMNLKFGKFRNKHISIAFLLVLAI- 413
N+V + K+ A LL A++ L G N + N N I F+L L++
Sbjct: 106 FDRNDVLYIYPKLAFFATLLIAIS----PLAGYNTVTNNYIPMLAN----IVFILGLSLF 157
Query: 414 -----------------LTVSNLIS----SSVLIMFINGLCISWGY 488
+ ++NL++ S++++ ++ +C W Y
Sbjct: 158 GVTLLLYAINILYLFDWMKLNNLVNVTVFSTIIMFILSFVCFGWSY 203
>sp|O28044|YM39_ARCFU Hypothetical protein AF2239
Length = 356
Score = 30.4 bits (67), Expect = 5.8
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
Frame = +3
Query: 54 LVTFSFFESRIFFILLDIISVFFIEKLLLPVWGWLELIKFCALVNCLSAISTVIIYIT-- 227
L T S+FESR L + + L L + E ++ + L A + VI ++
Sbjct: 214 LETISYFESRFEQTLSGVRDALDVVHLRLEMLRGKENLELQKRTSALQAAAAVIEFVAVF 273
Query: 228 FYAMTYNEVYLFHTKI-HGMA-PLLAALT---VSTRQLMGDNVLMNLKFGKFRNKHISIA 392
+Y+M E +L T++ H ++ LLAA T V + +GD + K +++A
Sbjct: 274 YYSMKIWEAFLPVTEMPHWLSFSLLAAFTFTVVVYTEALGDYIRERKPSSKLVLLTLTLA 333
Query: 393 FLLVLAILTVSNLISSS 443
L++L + T+ L S++
Sbjct: 334 ILVIL-MATLPTLFSAA 349
>sp|P40527|ATC7_YEAST Probable phospholipid-transporting ATPase NEO1
Length = 1151
Score = 30.0 bits (66), Expect = 7.5
Identities = 14/57 (24%), Positives = 32/57 (56%)
Frame = -3
Query: 214 ITVLIADKQLTKAQNLINSNQPQTGSRSFSIKNTDIISNKMKNILDSKKEKVTKLNI 44
I L++DK T QN + + G+ S++ + DI+S+ +++++ SK + + +
Sbjct: 497 IEYLLSDKTGTLTQNDMQLKKIHLGTVSYTSETLDIVSDYVQSLVSSKNDSLNNSKV 553
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,861,132
Number of Sequences: 369166
Number of extensions: 1725110
Number of successful extensions: 4733
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4728
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7454154400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)