Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_G01
(580 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9WUH1|PL6_MOUSE PL6 protein homolog 120 2e-27
sp|Q12893|PL6_HUMAN PL6 protein (Placental protein 6) (PP6) 116 5e-26
sp|P22579|SIN3_YEAST Paired amphipathic helix protein SIN3 32 1.5
sp|Q9HC62|SENP2_HUMAN Sentrin-specific protease 2 (Sentrin/... 30 4.3
sp|P08964|MYO1_YEAST Myosin-1 (Type II myosin) 30 5.6
sp|P38555|YPT31_YEAST GTP-binding protein YPT31/YPT8 (Rab G... 30 5.6
sp|P08111|L2GL_DROME Lethal(2) giant larvae protein 29 9.6
>sp|Q9WUH1|PL6_MOUSE PL6 protein homolog
Length = 350
Score = 120 bits (301), Expect = 2e-27
Identities = 68/150 (45%), Positives = 93/150 (62%), Gaps = 5/150 (3%)
Frame = +2
Query: 2 VSNLISSSVLIMFINGLCISWGYLRFFQKHSNGNVGDLSEKFAFSEFFPYHLEGPVSIVS 181
++ L+ S L + GL SW YLRF+Q+HS G GD+++ FAF+ FFP L+ V +++
Sbjct: 182 LATLLQSPALASYGFGLLSSWVYLRFYQRHSRGR-GDMADHFAFATFFPEILQPVVGLLA 240
Query: 182 NSIFGLLIYLKICKKIDRRYDXXXXXXXXXXXXXGDLVDSERRKQLALKALNERLCQKEK 361
N + GLL+ +KIC+K +RYD D D+ERR+QLALKALNERL + E
Sbjct: 241 NLVHGLLVKVKICQKTVKRYDVGAPSSITISLPGTDPQDAERRRQLALKALNERLKRVED 300
Query: 362 TMAWPSMDDDKD---LKTKA--PLNEESKP 436
AWPSMDDD++ KT + PL E S P
Sbjct: 301 QSAWPSMDDDEEEAGAKTDSPLPLEEASTP 330
>sp|Q12893|PL6_HUMAN PL6 protein (Placental protein 6) (PP6)
Length = 351
Score = 116 bits (290), Expect = 5e-26
Identities = 63/148 (42%), Positives = 89/148 (60%), Gaps = 3/148 (2%)
Frame = +2
Query: 2 VSNLISSSVLIMFINGLCISWGYLRFFQKHSNGNVGDLSEKFAFSEFFPYHLEGPVSIVS 181
++ L+ S L + GL SW YLRF+Q+HS G GD+++ FAF+ FFP L+ V +++
Sbjct: 182 LATLLQSPALASYGFGLLSSWVYLRFYQRHSRGR-GDMADHFAFATFFPEILQPVVGLLA 240
Query: 182 NSIFGLLIYLKICKKIDRRYDXXXXXXXXXXXXXGDLVDSERRKQLALKALNERLCQKEK 361
N + LL+ +KIC+K +RYD D D+ERR+QLALKALNERL + E
Sbjct: 241 NLVHSLLVKVKICQKTVKRYDVGAPSSITISLPGTDPQDAERRRQLALKALNERLKRVED 300
Query: 362 TMAWPSMDDDKD---LKTKAPLNEESKP 436
WPSMDDD++ K +PL + P
Sbjct: 301 QSIWPSMDDDEEESGAKVDSPLPSDKAP 328
>sp|P22579|SIN3_YEAST Paired amphipathic helix protein SIN3
Length = 1536
Score = 31.6 bits (70), Expect = 1.5
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +2
Query: 419 NEESKPKSLSALINEQYQSLPKRSDIEANPSV 514
+++ P+S+S + N QY +P R +I+ +PS+
Sbjct: 614 HQQQHPQSISPIANTQYGDIPVRPEIDLDPSI 645
>sp|Q9HC62|SENP2_HUMAN Sentrin-specific protease 2 (Sentrin/SUMO-specific protease SENP2)
(SMT3-specific isopeptidase 2) (Smt3ip2) (Axam2)
Length = 589
Score = 30.0 bits (66), Expect = 4.3
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 459 TSSISLFRKEVILKPIHRCIH 521
T ++LF +E+IL PIHR +H
Sbjct: 458 TKGVNLFEQEIILVPIHRKVH 478
>sp|P08964|MYO1_YEAST Myosin-1 (Type II myosin)
Length = 1928
Score = 29.6 bits (65), Expect = 5.6
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +2
Query: 314 QLALKALNERLCQKEKTMAWPS----MDDDKDLKTKAPLNEESKPKSLSALINEQYQSLP 481
QL LK L+ERL + AW S +++ L+T E K KSL + E
Sbjct: 1779 QLQLKNLHERLSDTTEKNAWLSKIHELENMVSLETDLKYEEMKKNKSLERAVEELQTKNS 1838
Query: 482 KRSDI 496
+++D+
Sbjct: 1839 QQTDV 1843
>sp|P38555|YPT31_YEAST GTP-binding protein YPT31/YPT8 (Rab GTPase YPT31)
Length = 223
Score = 29.6 bits (65), Expect = 5.6
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +2
Query: 416 LNEESKPKSLSALINEQYQSLPKR----SDIEANPSVHSHCRPNHPILSSVKT 562
LN E+ K+ LIN YQ + K D AN + + PN P +S T
Sbjct: 158 LNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGNANGASAPNGPTISLTPT 210
>sp|P08111|L2GL_DROME Lethal(2) giant larvae protein
Length = 1161
Score = 28.9 bits (63), Expect = 9.6
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +2
Query: 20 SSVLIMFINGLCISWGY-----LRFFQKHSNGNVGDLSEKFAFSEFFPYHLEG 163
S +L+ + GLC+ W + R + +G L+ F SEF YH +G
Sbjct: 198 SKLLVAYNRGLCVLWDFESASVQRAYIAPGHGQSVGLTVNFEGSEFTWYHADG 250
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,673,712
Number of Sequences: 369166
Number of extensions: 1149135
Number of successful extensions: 3350
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3348
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4259329035
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)