Planaria EST Database

DrC_00524

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00524
         (1337 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P18899|DDR48_YEAST  Stress protein DDR48 (DNA damage-resp...    38   0.076
sp|Q92804|RBP56_HUMAN  TATA-binding protein associated facto...    38   0.076
sp|P35637|FUS_HUMAN  RNA-binding protein FUS (Oncogene FUS) ...    33   1.4  
sp|P56959|FUS_MOUSE  RNA-binding protein FUS (Pigpen protein)      33   2.4  
sp|Q8TGH6|GDA1_CANAL  Guanosine-diphosphatase (GDPase)             33   2.4  
sp|Q24120|CAPU_DROME  Protein cappuccino                           32   4.2  
sp|Q28009|FUS_BOVIN  RNA-binding protein FUS (Pigpen protein)      32   5.4  
sp|O95248|MTMR5_HUMAN  SET binding factor 1 (Sbf1) (Myotubul...    32   5.4  
sp|Q705H5|VL2_HPV43  Minor capsid protein L2                       31   7.1  
sp|Q9NQ76|MEPE_HUMAN  Matrix extracellular phosphoglycoprote...    31   9.3  

>sp|P18899|DDR48_YEAST Stress protein DDR48 (DNA damage-responsive protein 48) (DDRP 48)
           (YP 75) (Flocculent-specific protein)
          Length = 430

 Score = 37.7 bits (86), Expect = 0.076
 Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 3/142 (2%)
 Frame = +1

Query: 181 DSGYSNDDYSSFGTNKNFDQSMSKFGNKPLYGDASSSQYKDVSRPDNSFGNSKPTRGGYS 360
           DS  S+++  S+G+N N D   S   NK  YG +S+      S  D+S+G+S   +  Y 
Sbjct: 255 DSYGSSNNNDSYGSN-NDDSYGSSNKNKSSYGSSSNDDSYGSSNNDDSYGSSNKKKSSYG 313

Query: 361 KFGDVQKSYQSGDMKADG-GGRDYSNMPQSNTTPY--ENYQSYDXXXXXXXXXXXXXXTG 531
              D   SY S +  + G   +  S+   SN   Y   N  SY                G
Sbjct: 314 SNND--DSYGSNNDDSYGSSNKKKSSYGSSNNDSYGSNNDDSY----------------G 355

Query: 532 DSNKEQPSSGGAGVAPNYQAAN 597
            SNK++ SS G+    +Y ++N
Sbjct: 356 SSNKKK-SSYGSNNDDSYGSSN 376


 Score = 37.0 bits (84), Expect = 0.13
 Identities = 27/81 (33%), Positives = 33/81 (40%)
 Frame = +1

Query: 187 GYSNDDYSSFGTNKNFDQSMSKFGNKPLYGDASSSQYKDVSRPDNSFGNSKPTRGGYSKF 366
           G SN   SS+G+N   D S     N   YG  +   Y   +R  NS+G+S     G S  
Sbjct: 355 GSSNKKKSSYGSNN--DDSYGSSNNNDSYGSNNDDSYGSSNRNKNSYGSS---NYGSSNN 409

Query: 367 GDVQKSYQSGDMKADGGGRDY 429
            D   S   G     GG  DY
Sbjct: 410 DDSYGSSNRGGRNQYGGDDDY 430


 Score = 35.4 bits (80), Expect = 0.38
 Identities = 27/129 (20%), Positives = 49/129 (37%)
 Frame = +1

Query: 181 DSGYSNDDYSSFGTNKNFDQSMSKFGNKPLYGDASSSQYKDVSRPDNSFGNSKPTRGGYS 360
           +  Y +++  S+G+N N     +   N   YG  +   Y   ++  +S+G++     G S
Sbjct: 85  NDSYGSNNNDSYGSNNNDSYGSN---NNDSYGSNNDDSYGSSNKKKSSYGSNNDDSYGSS 141

Query: 361 KFGDVQKSYQSGDMKADGGGRDYSNMPQSNTTPYENYQSYDXXXXXXXXXXXXXXTGDSN 540
              D   S  +    ++      SN   S  +  +N  SY                G SN
Sbjct: 142 NNNDSYGSNNNDSYGSNNNDSYGSNNDDSYGSSNKNKSSYGSNNDDSYGSNNDDSYGSSN 201

Query: 541 KEQPSSGGA 567
           K++ S G +
Sbjct: 202 KKKSSYGSS 210

>sp|Q92804|RBP56_HUMAN TATA-binding protein associated factor 2N (RNA-binding protein 56)
           (TAFII68) (TAF(II)68)
          Length = 592

 Score = 37.7 bits (86), Expect = 0.076
 Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
 Frame = +1

Query: 202 DYSSFGTNKNFDQSMSKFGN--KPLYGDASSSQYKDVSRPDNSFGNSKPTRGGYSKFGDV 375
           D  S+G +    QS S +GN     YG AS S        D+S+G +     GYS +G  
Sbjct: 3   DSGSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQN---YSGYSSYGQS 59

Query: 376 QKSY-QSGDMKADGGGRDYSNMPQSNTTPYENYQS 477
           Q  Y QS     +     YS  P +N    +N +S
Sbjct: 60  QSGYSQSYGGYENQKQSSYSQQPYNNQGQQQNMES 94

>sp|P35637|FUS_HUMAN RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS) (Translocated
           in liposarcoma protein) (POMp75) (75 kDa DNA-pairing
           protein)
          Length = 526

 Score = 33.5 bits (75), Expect = 1.4
 Identities = 37/140 (26%), Positives = 50/140 (35%), Gaps = 11/140 (7%)
 Frame = +1

Query: 184 SGYSNDDYSSFGTNKN----FDQSMSKFGNKPLYGDASSSQYKDVSRPDNSFG--NSKPT 345
           SGY    YSS+G ++N       +   +G+   YG + SSQ        +S+G  +S P 
Sbjct: 48  SGYGQSSYSSYGQSQNTGYGTQSTPQGYGSTGGYGSSQSSQ--------SSYGQQSSYPG 99

Query: 346 RGGYSKFGDVQKSYQSGDMKADGG---GRDYSNMPQ--SNTTPYENYQSYDXXXXXXXXX 510
            G          SY S    +  G      YS  P        Y   QSY+         
Sbjct: 100 YGQQPAPSSTSGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQQSYGQQQSYNPPQGY---- 155

Query: 511 XXXXXTGDSNKEQPSSGGAG 570
                 G  N+   SSGG G
Sbjct: 156 ------GQQNQYNSSSGGGG 169

>sp|P56959|FUS_MOUSE RNA-binding protein FUS (Pigpen protein)
          Length = 518

 Score = 32.7 bits (73), Expect = 2.4
 Identities = 46/220 (20%), Positives = 71/220 (32%), Gaps = 14/220 (6%)
 Frame = +1

Query: 193 SNDDYSSFGTNKNFDQSMSKFGNKPLYGDASSSQYKDVSRPDNSFGNSKPTRG-GYSKFG 369
           +++DY+   T     QS   +  +P  G +  S      +  + +G S  T G G S +G
Sbjct: 2   ASNDYTQQAT-----QSYGAYPTQPGQGYSQQSSQPYGQQSYSGYGQSADTSGYGQSSYG 56

Query: 370 DVQKSYQSGDMKADGGGRDYSNM-----PQSNTTPYENYQSYDXXXXXXXXXXXXXXTGD 534
                 Q+         + Y +       QS+ + Y    SY                G 
Sbjct: 57  SSYGQTQNTGYGTQSAPQGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGG 116

Query: 535 SNKE----QPSSGGAGVAPNYQAANRTPXXXXXXXXXXXXXXXXXXXXXXGVGYQSYSAS 702
           S++     QP SGG G    Y    ++                       G G Q+   S
Sbjct: 117 SSQSSSYGQPQSGGYGQQSGYGGQQQS-----------YGQQQSSYNPPQGYGQQNQYNS 165

Query: 703 NPATGTNFQASNYSSNQMPSSGAS----YQSNYPAGGSGG 810
           +   G      NY  +Q   SG      Y +   +GG GG
Sbjct: 166 SSGGGGGGGGGNYGQDQSSMSGGGGGGGYGNQDQSGGGGG 205

>sp|Q8TGH6|GDA1_CANAL Guanosine-diphosphatase (GDPase)
          Length = 599

 Score = 32.7 bits (73), Expect = 2.4
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 1075 KPAVMDRSMPPPAVATTVASQPPPNQNQ 1158
            KPA     +PPPA A    S PPP+Q Q
Sbjct: 40   KPAADSPHVPPPAAAAAPVSPPPPSQQQ 67

>sp|Q24120|CAPU_DROME Protein cappuccino
          Length = 1059

 Score = 32.0 bits (71), Expect = 4.2
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -1

Query: 71  PRPPLPPCIAFLMPPPPP 18
           P PP PP  AF+ PPPPP
Sbjct: 487 PPPPPPPLHAFVAPPPPP 504

>sp|Q28009|FUS_BOVIN RNA-binding protein FUS (Pigpen protein)
          Length = 512

 Score = 31.6 bits (70), Expect = 5.4
 Identities = 24/88 (27%), Positives = 32/88 (36%)
 Frame = +1

Query: 184 SGYSNDDYSSFGTNKNFDQSMSKFGNKPLYGDASSSQYKDVSRPDNSFGNSKPTRGGYSK 363
           SGY       +G    +      +G +  Y       Y   S+ ++S G      GG   
Sbjct: 120 SGYGQPQGGGYGQQSGYGGQQQSYGQQQSYNPPQG--YGQQSQYNSSGGGGG---GGGGS 174

Query: 364 FGDVQKSYQSGDMKADGGGRDYSNMPQS 447
           +G  Q S  SG     GGG  Y N  QS
Sbjct: 175 YGQDQPSMSSG-----GGGGGYGNQDQS 197

>sp|O95248|MTMR5_HUMAN SET binding factor 1 (Sbf1) (Myotubularin-related protein 5)
          Length = 1866

 Score = 31.6 bits (70), Expect = 5.4
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +1

Query: 280  ASSSQYKDVSRPDNSFGNSKPTRGGYSKFGDVQKSYQSGDMKADGG----GRDYSNMPQS 447
            +S  +Y D S  +   G S    G + K+G V+ S +S  +  D G    GRD    PQ+
Sbjct: 1250 SSMPRYADASGRNTLSGFSSAHMGSHGKWGSVRTSGRSSGLGTDVGSRLAGRDALAPPQA 1309

Query: 448  NTTP 459
            N  P
Sbjct: 1310 NGGP 1313

>sp|Q705H5|VL2_HPV43 Minor capsid protein L2
          Length = 463

 Score = 31.2 bits (69), Expect = 7.1
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +2

Query: 797 VDPAGTNPTILQIHPVLQLLTSLLINHQRPILLVVQLEPVGT-QIHTVPCMKTPAVGT 967
           ++PA T+PTI+Q  P ++    ++I+H        +  P+ T  IH+ P   TP  GT
Sbjct: 163 LNPAFTDPTIVQPTPPVEAGGRIIISHSTVTADSAEQIPMDTFVIHSDPTTSTPIPGT 220

>sp|Q9NQ76|MEPE_HUMAN Matrix extracellular phosphoglycoprotein precursor
            (Osteoblast/osteocyte factor 45) (OF45)
          Length = 525

 Score = 30.8 bits (68), Expect = 9.3
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +2

Query: 1130 HLNRPLTRIKLVGELDMETIPNTMVNIMASS 1222
            H+  P+T IKL+GE + E  P  ++NI+ +S
Sbjct: 153  HIMGPVTAIKLLGEENKENTPRNVLNIIPAS 183

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.310    0.127    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 162,311,255
Number of Sequences: 369166
Number of extensions: 3579030
Number of successful extensions: 9580
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9454
length of database: 68,354,980
effective HSP length: 114
effective length of database: 47,295,190
effective search space used: 15654707890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)

Cluster detail

DrC_00524

  1. Dr_sW_013_L07
  2. Dr_sW_017_J09