Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_L07
(873 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18899|DDR48_YEAST Stress protein DDR48 (DNA damage-resp... 38 0.042
sp|Q92804|RBP56_HUMAN TATA-binding protein associated facto... 38 0.042
sp|P35637|FUS_HUMAN RNA-binding protein FUS (Oncogene FUS) ... 33 0.79
sp|P56959|FUS_MOUSE RNA-binding protein FUS (Pigpen protein) 33 1.4
sp|Q24120|CAPU_DROME Protein cappuccino 32 2.3
sp|O95248|MTMR5_HUMAN SET binding factor 1 (Sbf1) (Myotubul... 32 3.0
sp|P04282|GAG17_DROME Retrovirus-related Gag polyprotein fr... 31 5.1
sp|Q7N6G6|RUMB_PHOLL 23S rRNA (Uracil-5-)-methyltransferase... 31 5.1
sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoprotei... 30 6.7
sp|Q9Y4D1|DAAM1_HUMAN Disheveled associated activator of mo... 30 8.8
>sp|P18899|DDR48_YEAST Stress protein DDR48 (DNA damage-responsive protein 48) (DDRP 48)
(YP 75) (Flocculent-specific protein)
Length = 430
Score = 37.7 bits (86), Expect = 0.042
Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 3/142 (2%)
Frame = +1
Query: 181 DSGYSNDDYSSFGTNKNFDQSMSKFGNKPLYGDASSSQYKDVSRPDNSFGNSKPTRGGYS 360
DS S+++ S+G+N N D S NK YG +S+ S D+S+G+S + Y
Sbjct: 255 DSYGSSNNNDSYGSN-NDDSYGSSNKNKSSYGSSSNDDSYGSSNNDDSYGSSNKKKSSYG 313
Query: 361 KFGDVQKSYQSGDMKADG-GGRDYSNMPQSNTTPY--ENYQSYDXXXXXXXXXXXXXXTG 531
D SY S + + G + S+ SN Y N SY G
Sbjct: 314 SNND--DSYGSNNDDSYGSSNKKKSSYGSSNNDSYGSNNDDSY----------------G 355
Query: 532 DSNKEQPSSGGAGVAPNYQAAN 597
SNK++ SS G+ +Y ++N
Sbjct: 356 SSNKKK-SSYGSNNDDSYGSSN 376
Score = 37.0 bits (84), Expect = 0.072
Identities = 27/81 (33%), Positives = 33/81 (40%)
Frame = +1
Query: 187 GYSNDDYSSFGTNKNFDQSMSKFGNKPLYGDASSSQYKDVSRPDNSFGNSKPTRGGYSKF 366
G SN SS+G+N D S N YG + Y +R NS+G+S G S
Sbjct: 355 GSSNKKKSSYGSNN--DDSYGSSNNNDSYGSNNDDSYGSSNRNKNSYGSS---NYGSSNN 409
Query: 367 GDVQKSYQSGDMKADGGGRDY 429
D S G GG DY
Sbjct: 410 DDSYGSSNRGGRNQYGGDDDY 430
Score = 35.4 bits (80), Expect = 0.21
Identities = 27/129 (20%), Positives = 49/129 (37%)
Frame = +1
Query: 181 DSGYSNDDYSSFGTNKNFDQSMSKFGNKPLYGDASSSQYKDVSRPDNSFGNSKPTRGGYS 360
+ Y +++ S+G+N N + N YG + Y ++ +S+G++ G S
Sbjct: 85 NDSYGSNNNDSYGSNNNDSYGSN---NNDSYGSNNDDSYGSSNKKKSSYGSNNDDSYGSS 141
Query: 361 KFGDVQKSYQSGDMKADGGGRDYSNMPQSNTTPYENYQSYDXXXXXXXXXXXXXXTGDSN 540
D S + ++ SN S + +N SY G SN
Sbjct: 142 NNNDSYGSNNNDSYGSNNNDSYGSNNDDSYGSSNKNKSSYGSNNDDSYGSNNDDSYGSSN 201
Query: 541 KEQPSSGGA 567
K++ S G +
Sbjct: 202 KKKSSYGSS 210
>sp|Q92804|RBP56_HUMAN TATA-binding protein associated factor 2N (RNA-binding protein 56)
(TAFII68) (TAF(II)68)
Length = 592
Score = 37.7 bits (86), Expect = 0.042
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Frame = +1
Query: 202 DYSSFGTNKNFDQSMSKFGN--KPLYGDASSSQYKDVSRPDNSFGNSKPTRGGYSKFGDV 375
D S+G + QS S +GN YG AS S D+S+G + GYS +G
Sbjct: 3 DSGSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQN---YSGYSSYGQS 59
Query: 376 QKSY-QSGDMKADGGGRDYSNMPQSNTTPYENYQS 477
Q Y QS + YS P +N +N +S
Sbjct: 60 QSGYSQSYGGYENQKQSSYSQQPYNNQGQQQNMES 94
>sp|P35637|FUS_HUMAN RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS) (Translocated
in liposarcoma protein) (POMp75) (75 kDa DNA-pairing
protein)
Length = 526
Score = 33.5 bits (75), Expect = 0.79
Identities = 37/140 (26%), Positives = 50/140 (35%), Gaps = 11/140 (7%)
Frame = +1
Query: 184 SGYSNDDYSSFGTNKN----FDQSMSKFGNKPLYGDASSSQYKDVSRPDNSFG--NSKPT 345
SGY YSS+G ++N + +G+ YG + SSQ +S+G +S P
Sbjct: 48 SGYGQSSYSSYGQSQNTGYGTQSTPQGYGSTGGYGSSQSSQ--------SSYGQQSSYPG 99
Query: 346 RGGYSKFGDVQKSYQSGDMKADGG---GRDYSNMPQ--SNTTPYENYQSYDXXXXXXXXX 510
G SY S + G YS P Y QSY+
Sbjct: 100 YGQQPAPSSTSGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQQSYGQQQSYNPPQGY---- 155
Query: 511 XXXXXTGDSNKEQPSSGGAG 570
G N+ SSGG G
Sbjct: 156 ------GQQNQYNSSSGGGG 169
>sp|P56959|FUS_MOUSE RNA-binding protein FUS (Pigpen protein)
Length = 518
Score = 32.7 bits (73), Expect = 1.4
Identities = 46/220 (20%), Positives = 71/220 (32%), Gaps = 14/220 (6%)
Frame = +1
Query: 193 SNDDYSSFGTNKNFDQSMSKFGNKPLYGDASSSQYKDVSRPDNSFGNSKPTRG-GYSKFG 369
+++DY+ T QS + +P G + S + + +G S T G G S +G
Sbjct: 2 ASNDYTQQAT-----QSYGAYPTQPGQGYSQQSSQPYGQQSYSGYGQSADTSGYGQSSYG 56
Query: 370 DVQKSYQSGDMKADGGGRDYSNM-----PQSNTTPYENYQSYDXXXXXXXXXXXXXXTGD 534
Q+ + Y + QS+ + Y SY G
Sbjct: 57 SSYGQTQNTGYGTQSAPQGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGG 116
Query: 535 SNKE----QPSSGGAGVAPNYQAANRTPXXXXXXXXXXXXXXXXXXXXXXGVGYQSYSAS 702
S++ QP SGG G Y ++ G G Q+ S
Sbjct: 117 SSQSSSYGQPQSGGYGQQSGYGGQQQS-----------YGQQQSSYNPPQGYGQQNQYNS 165
Query: 703 NPATGTNFQASNYSSNQMPSSGAS----YQSNYPAGGSGG 810
+ G NY +Q SG Y + +GG GG
Sbjct: 166 SSGGGGGGGGGNYGQDQSSMSGGGGGGGYGNQDQSGGGGG 205
>sp|Q24120|CAPU_DROME Protein cappuccino
Length = 1059
Score = 32.0 bits (71), Expect = 2.3
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -2
Query: 71 PRPPLPPCIAFLMPPPPP 18
P PP PP AF+ PPPPP
Sbjct: 487 PPPPPPPLHAFVAPPPPP 504
>sp|O95248|MTMR5_HUMAN SET binding factor 1 (Sbf1) (Myotubularin-related protein 5)
Length = 1866
Score = 31.6 bits (70), Expect = 3.0
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +1
Query: 280 ASSSQYKDVSRPDNSFGNSKPTRGGYSKFGDVQKSYQSGDMKADGG----GRDYSNMPQS 447
+S +Y D S + G S G + K+G V+ S +S + D G GRD PQ+
Sbjct: 1250 SSMPRYADASGRNTLSGFSSAHMGSHGKWGSVRTSGRSSGLGTDVGSRLAGRDALAPPQA 1309
Query: 448 NTTP 459
N P
Sbjct: 1310 NGGP 1313
>sp|P04282|GAG17_DROME Retrovirus-related Gag polyprotein from copia-like transposable
element 17.6
Length = 439
Score = 30.8 bits (68), Expect = 5.1
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Frame = +1
Query: 214 FGTNKNFDQSMSKFGNKPLYGDASSSQYKDVSRPDNSFGNSKPTRGGYSKFGDVQKSYQS 393
F TN+N ++FG +P Y + S+Q P+ +P G + + YQ
Sbjct: 303 FNTNRNNAFDQNRFGQQPQYQNQQSTQNSSSYVPNRPIKRLRPANSGQTGMSVDETLYQE 362
Query: 394 GDMKADGGGRDYSNMP---QSNTTPYENYQ 474
DY P S+ P YQ
Sbjct: 363 DAFYQQCVPYDYFYYPTYDHSDYYPENQYQ 392
>sp|Q7N6G6|RUMB_PHOLL 23S rRNA (Uracil-5-)-methyltransferase rumB (23S
rRNA(M-5-U747)-methyltransferase)
Length = 377
Score = 30.8 bits (68), Expect = 5.1
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Frame = +3
Query: 687 IIFCFKSCHWNQFSSVQLFIKPNAVFWS--KLSIEL---SGRWIRRVPI 818
I+F + QF+ + L+I+P++ F + K++ EL +GRW+R + I
Sbjct: 186 ILFTEQKAFKEQFNGIPLYIRPHSFFQTNPKMASELYATAGRWVRELKI 234
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 / hnRNP
B1)
Length = 341
Score = 30.4 bits (67), Expect = 6.7
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 14/60 (23%)
Frame = +1
Query: 673 GVGYQSYSASNPATGT-------NFQASNYSSNQMPSSGASYQ-------SNYPAGGSGG 810
G GY +Y N +GT N Q SNY + + G S NY GGSGG
Sbjct: 272 GGGYDNYGGGNYGSGTYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGG 331
>sp|Q9Y4D1|DAAM1_HUMAN Disheveled associated activator of morphogenesis 1
Length = 1078
Score = 30.0 bits (66), Expect = 8.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 74 LPRPPLPPCIAFLMPPPPP 18
LP PP PP ++PPPPP
Sbjct: 549 LPPPPPPPLPGGMLPPPPP 567
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.302 0.123 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,846,042
Number of Sequences: 369166
Number of extensions: 2216441
Number of successful extensions: 4893
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4786
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)