Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_J09
(522 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8TGH6|GDA1_CANAL Guanosine-diphosphatase (GDPase) 33 0.54
sp|Q9NQ76|MEPE_HUMAN Matrix extracellular phosphoglycoprote... 31 2.0
sp|P33976|Y911_CAUCR Hypothetical protein CC0911 30 4.6
sp|P10723|SYNC_BRUMA Asparaginyl-tRNA synthetase, cytoplasm... 29 7.8
sp|P37370|VRP1_YEAST Verprolin 29 7.8
>sp|Q8TGH6|GDA1_CANAL Guanosine-diphosphatase (GDPase)
Length = 599
Score = 32.7 bits (73), Expect = 0.54
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +2
Query: 260 KPAVMDRSMPPPAVATTVASQPPPNQNQ 343
KPA +PPPA A S PPP+Q Q
Sbjct: 40 KPAADSPHVPPPAAAAAPVSPPPPSQQQ 67
>sp|Q9NQ76|MEPE_HUMAN Matrix extracellular phosphoglycoprotein precursor
(Osteoblast/osteocyte factor 45) (OF45)
Length = 525
Score = 30.8 bits (68), Expect = 2.0
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 315 HLNRPLTRIKLVGELDMETIPNTMVNIMASS 407
H+ P+T IKL+GE + E P ++NI+ +S
Sbjct: 153 HIMGPVTAIKLLGEENKENTPRNVLNIIPAS 183
>sp|P33976|Y911_CAUCR Hypothetical protein CC0911
Length = 493
Score = 29.6 bits (65), Expect = 4.6
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = +2
Query: 245 ADYNTKPAVMDRSMPPPAVATTVASQPPPNQNQAS 349
A T PA PP VATTVA PP AS
Sbjct: 76 APQTTAPAAPPAIQPPAPVATTVAKASPPPAKPAS 110
>sp|P10723|SYNC_BRUMA Asparaginyl-tRNA synthetase, cytoplasmic (Asparagine--tRNA ligase)
(AsnRS) (Potentially protective 63 kDa antigen)
Length = 548
Score = 28.9 bits (63), Expect = 7.8
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = -2
Query: 281 IDP*PLVWYCSQQIWSWLSCCHHHHMIPIEQKYWSFDHHNNQNCTHCWRFHTWHCMDLCT 102
IDP P WY Q+++ +C H + + +E+ CW +T H D+C
Sbjct: 494 IDPKPYYWYLDQRLYG--TCPHGGYGLGLERFI-------------CWLTNTNHIRDVCL 538
Query: 101 H 99
+
Sbjct: 539 Y 539
>sp|P37370|VRP1_YEAST Verprolin
Length = 817
Score = 28.9 bits (63), Expect = 7.8
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +2
Query: 287 PPPAVATTVASQPPP 331
PPP+VAT+V S PPP
Sbjct: 429 PPPSVATSVPSAPPP 443
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,632,635
Number of Sequences: 369166
Number of extensions: 1313831
Number of successful extensions: 4379
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4358
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3452909250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)