DrC_00517
- Cluster detail
- GO Category :
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00517 (1252 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P26368|U2AF2_HUMAN Splicing factor U2AF 65 kDa subunit (... 394 e-109 sp|P26369|U2AF2_MOUSE Splicing factor U2AF 65 kDa subunit (... 394 e-109 sp|Q24562|U2AF2_DROME Splicing factor U2AF 50 kDa subunit (... 383 e-106 sp|P90727|U2AF2_CAEBR Splicing factor U2AF 65 kDa subunit (... 345 1e-94 sp|P90978|U2AF2_CAEEL Splicing factor U2AF 65 kDa subunit (... 343 6e-94 sp|P36629|U2AF2_SCHPO Splicing factor U2AF 59 kDa subunit (... 172 1e-42 sp|Q8TAS1|UHMK1_HUMAN Serine/threonine-protein kinase Kist ... 89 3e-17 sp|P97343|UHMK1_MOUSE Serine/threonine-protein kinase Kist ... 87 8e-17 sp|Q63285|UHMK1_RAT Serine/threonine-protein kinase Kist (K... 87 8e-17 sp|O43040|CTF1_SCHPO Cleavage and termination factor 1 (Tra... 65 5e-10
>sp|P26368|U2AF2_HUMAN Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 394 bits (1013), Expect = e-109 Identities = 199/385 (51%), Positives = 271/385 (70%), Gaps = 8/385 (2%) Frame = +3 Query: 81 KKNYKYWDVAPTGYENMSAAEFKQIHSGGQVLPSLYLTEGSVVNMGLTAAEYPSIGNTVS 260 KK KYWDV P G+E+++ ++K + + GQ+ + L + + +T P +G+ ++ Sbjct: 86 KKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMT 145 Query: 261 RQARRIYVGNLPLGVTEEGMMEFFNEQIKLKEYTQAEGDPIIAVQINTDKNFAFLEFRSV 440 RQARR+YVGN+P G+TEE MM+FFN Q++L TQA G+P++AVQIN DKNFAFLEFRSV Sbjct: 146 RQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSV 205 Query: 441 EETNQGLNLDGIVYHGFALKLRRPRDYVPLPQAFD--GIVSNSMTAGIVQDTPHKLFVGG 614 +ET Q + DGI++ G +LK+RRP DY PLP + + + + +V D+ HKLF+GG Sbjct: 206 DETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGG 265 Query: 615 LPQYLGEDQVKELLQTFGPLRGFNLVKDSTTGLSKGYAFCEYADHSVTDKACMGLTGMQL 794 LP YL +DQVKELL +FGPL+ FNLVKDS TGLSKGYAFCEY D +VTD+A GL GMQL Sbjct: 266 LPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQL 325 Query: 795 GEKRIVVQRACLGAKNST------GIPTGPLMLTQPMMMDPLKMVNVEETEVLCLHNMVM 956 G+K+++VQRA +GAKN+T I P+ L P +M + TEVLCL NMV+ Sbjct: 326 GDKKLLVQRASVGAKNATLVSPPSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVL 385 Query: 957 IDDLNDDEEYEEIMEDVKEECSKFGNVLSVQIPRPTGTDDNVSGVGKIYVEFQNKSETVK 1136 ++L DDEEYEEI+EDV++ECSK+G V S++IPRP + V G GKI+VEF + + K Sbjct: 386 PEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVE-VPGCGKIFVEFTSVFDCQK 444 Query: 1137 AMKALSGRTFSGKVVVTSFYDLEKY 1211 AM+ L+GR F+ +VVVT + D + Y Sbjct: 445 AMQGLTGRKFANRVVVTKYCDPDSY 469
>sp|P26369|U2AF2_MOUSE Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 394 bits (1013), Expect = e-109 Identities = 199/385 (51%), Positives = 271/385 (70%), Gaps = 8/385 (2%) Frame = +3 Query: 81 KKNYKYWDVAPTGYENMSAAEFKQIHSGGQVLPSLYLTEGSVVNMGLTAAEYPSIGNTVS 260 KK KYWDV P G+E+++ ++K + + GQ+ + L + + +T P +G+ ++ Sbjct: 86 KKVRKYWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMT 145 Query: 261 RQARRIYVGNLPLGVTEEGMMEFFNEQIKLKEYTQAEGDPIIAVQINTDKNFAFLEFRSV 440 RQARR+YVGN+P G+TEE MM+FFN Q++L TQA G+P++AVQIN DKNFAFLEFRSV Sbjct: 146 RQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSV 205 Query: 441 EETNQGLNLDGIVYHGFALKLRRPRDYVPLPQAFD--GIVSNSMTAGIVQDTPHKLFVGG 614 +ET Q + DGI++ G +LK+RRP DY PLP + + + + +V D+ HKLF+GG Sbjct: 206 DETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGG 265 Query: 615 LPQYLGEDQVKELLQTFGPLRGFNLVKDSTTGLSKGYAFCEYADHSVTDKACMGLTGMQL 794 LP YL +DQVKELL +FGPL+ FNLVKDS TGLSKGYAFCEY D +VTD+A GL GMQL Sbjct: 266 LPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQL 325 Query: 795 GEKRIVVQRACLGAKNST------GIPTGPLMLTQPMMMDPLKMVNVEETEVLCLHNMVM 956 G+K+++VQRA +GAKN+T I P+ L P +M + TEVLCL NMV+ Sbjct: 326 GDKKLLVQRASVGAKNATLVSLPSTINQTPVTLQVPGLMSSQVQMGGHPTEVLCLMNMVL 385 Query: 957 IDDLNDDEEYEEIMEDVKEECSKFGNVLSVQIPRPTGTDDNVSGVGKIYVEFQNKSETVK 1136 ++L DDEEYEEI+EDV++ECSK+G V S++IPRP + V G GKI+VEF + + K Sbjct: 386 PEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVE-VPGCGKIFVEFTSVFDCQK 444 Query: 1137 AMKALSGRTFSGKVVVTSFYDLEKY 1211 AM+ L+GR F+ +VVVT + D + Y Sbjct: 445 AMQGLTGRKFANRVVVTKYCDPDSY 469
>sp|Q24562|U2AF2_DROME Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 383 bits (984), Expect = e-106 Identities = 200/387 (51%), Positives = 269/387 (69%), Gaps = 10/387 (2%) Frame = +3 Query: 81 KKNYKYWDVAPTGYENMSAAEFKQIHSGGQVLPSLYLTEGSVVNMGLTAAEYPSIGNTVS 260 +K YWDV P G+E+++ ++K + + GQ+ S+ V + TA P +G+T++ Sbjct: 38 RKPSLYWDVPPPGFEHITPMQYKAMQASGQIPASV------VPDTPQTAV--PVVGSTIT 89 Query: 261 RQARRIYVGNLPLGVTEEGMMEFFNEQIKLKEYTQAEGDPIIAVQINTDKNFAFLEFRSV 440 RQARR+YVGN+P GVTEE MMEFFN+Q+ L QA G P++A QIN DKNFAFLEFRS+ Sbjct: 90 RQARRLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAAGSPVLACQINLDKNFAFLEFRSI 149 Query: 441 EETNQGLNLDGIVYHGFALKLRRPRDYVPLPQAFD------GIVSNSMTAGIVQDTPHKL 602 +ET Q + DGI G +LK+RRP DY P+P D +VS+ + + +V D+PHK+ Sbjct: 150 DETTQAMAFDGINLKGQSLKIRRPHDYQPMPGITDTPAIKPAVVSSGVISTVVPDSPHKI 209 Query: 603 FVGGLPQYLGEDQVKELLQTFGPLRGFNLVKDSTTGLSKGYAFCEYADHSVTDKACMGLT 782 F+GGLP YL +DQVKELL +FG LR FNLVKD+ TGLSKGYAFCEY D S+TD++ GL Sbjct: 210 FIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLN 269 Query: 783 GMQLGEKRIVVQRACLGAKNSTGIPTGPLMLTQPMMMDPLKMVNV----EETEVLCLHNM 950 GMQLG+K+++VQRA +GAKN+ TQ +M+ + NV TEVLCL NM Sbjct: 270 GMQLGDKKLIVQRASVGAKNAQNAAN----TTQSVMLQVPGLSNVVTSGPPTEVLCLLNM 325 Query: 951 VMIDDLNDDEEYEEIMEDVKEECSKFGNVLSVQIPRPTGTDDNVSGVGKIYVEFQNKSET 1130 V D+L D+EEYE+I+ED+KEEC+K+G V SV+IPRP V G GK++VEF + + Sbjct: 326 VTPDELRDEEEYEDILEDIKEECTKYGVVRSVEIPRPI-EGVEVPGCGKVFVEFNSVLDC 384 Query: 1131 VKAMKALSGRTFSGKVVVTSFYDLEKY 1211 KA +AL+GR FS +VVVTS++D +KY Sbjct: 385 QKAQQALTGRKFSDRVVVTSYFDPDKY 411
>sp|P90727|U2AF2_CAEBR Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 345 bits (886), Expect = 1e-94 Identities = 186/382 (48%), Positives = 252/382 (65%), Gaps = 1/382 (0%) Frame = +3 Query: 84 KNYKYWDVAPTGYENMSAAEFKQIHSGGQVLPSLYLTEGSVVNMGLTAAEYPSIGNTVSR 263 K Y++WDV PTG+EN++ E+K + + G V GSV + P +G +V+ Sbjct: 125 KKYRFWDVPPTGFENITPMEYKNMQASGAV------PRGSV------QSAVPVVGPSVTC 172 Query: 264 QARRIYVGNLPLGVTEEGMMEFFNEQIKLKEYTQAEGDPIIAVQINTDKNFAFLEFRSVE 443 Q+RR+YVGN+P G EE M++FFN+Q+ L QA G+PI+ QIN DKNFAF+EFRS++ Sbjct: 173 QSRRLYVGNIPFGCNEEAMLDFFNQQMHLCNLAQAPGNPILLCQINLDKNFAFIEFRSID 232 Query: 444 ETNQGLNLDGIVYHGFALKLRRPRDYVPLPQAFDGIVSNSMTAGIVQDTPHKLFVGGLPQ 623 ET G+ DGI + G LK+RRPRDY P FD + + + IV D+ +K+F+GGLP Sbjct: 233 ETTAGMAFDGINFMGQQLKVRRPRDYQPSQNTFD-MNARMPVSSIVVDSANKIFIGGLPN 291 Query: 624 YLGEDQVKELLQTFGPLRGFNLVKDSTTGLSKGYAFCEYADHSVTDKACMGLTGMQLGEK 803 YL EDQVKELL +FGPL+ F+L DS G SKGYAF EY D ++TD+A GL GMQLG+K Sbjct: 292 YLTEDQVKELLCSFGPLKAFSLNVDS-QGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDK 350 Query: 804 RIVVQRACLG-AKNSTGIPTGPLMLTQPMMMDPLKMVNVEETEVLCLHNMVMIDDLNDDE 980 ++VVQ AC +++T +P + L TE+LCL NMV D+L DE Sbjct: 351 QLVVQLACANQTRHNTHLPNS----ASAIAGIDLSQGAGRATEILCLMNMVTEDELRSDE 406 Query: 981 EYEEIMEDVKEECSKFGNVLSVQIPRPTGTDDNVSGVGKIYVEFQNKSETVKAMKALSGR 1160 +YEEI+EDV+EECSK+G V S++IPRP D V GVGK++VEF S+ +A AL+GR Sbjct: 407 DYEEILEDVREECSKYGIVRSLEIPRPY-DDHPVPGVGKVFVEFATTSDCQRAQAALTGR 465 Query: 1161 TFSGKVVVTSFYDLEKYKNGFF 1226 F+ + VVTS+YD++KY N F Sbjct: 466 KFANRTVVTSYYDVDKYHNRQF 487
>sp|P90978|U2AF2_CAEEL Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 496 Score = 343 bits (880), Expect = 6e-94 Identities = 186/382 (48%), Positives = 252/382 (65%), Gaps = 1/382 (0%) Frame = +3 Query: 84 KNYKYWDVAPTGYENMSAAEFKQIHSGGQVLPSLYLTEGSVVNMGLTAAEYPSIGNTVSR 263 K Y++WDV PTG+E + E+K + + GQV GSV + P +G +V+ Sbjct: 134 KKYRFWDVPPTGFETTTPMEYKNMQAAGQV------PRGSV------QSAVPVVGPSVTC 181 Query: 264 QARRIYVGNLPLGVTEEGMMEFFNEQIKLKEYTQAEGDPIIAVQINTDKNFAFLEFRSVE 443 Q+RR+YVGN+P G EE M++FFN+Q+ L QA G+PI+ QIN DKNFAF+EFRS++ Sbjct: 182 QSRRLYVGNIPFGCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSID 241 Query: 444 ETNQGLNLDGIVYHGFALKLRRPRDYVPLPQAFDGIVSNSMTAGIVQDTPHKLFVGGLPQ 623 ET G+ DGI + G LK+RRPRDY P FD + S + IV D+ +K+F+GGLP Sbjct: 242 ETTAGMAFDGINFMGQQLKVRRPRDYQPSQNTFD-MNSRMPVSTIVVDSANKIFIGGLPN 300 Query: 624 YLGEDQVKELLQTFGPLRGFNLVKDSTTGLSKGYAFCEYADHSVTDKACMGLTGMQLGEK 803 YL EDQVKELL +FGPL+ F+L DS G SKGYAF EY D ++TD+A GL GMQLG+K Sbjct: 301 YLTEDQVKELLCSFGPLKAFSLNVDS-QGNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDK 359 Query: 804 RIVVQRACLG-AKNSTGIPTGPLMLTQPMMMDPLKMVNVEETEVLCLHNMVMIDDLNDDE 980 ++VVQ AC +++T +P + L TE+LCL NMV D+L D+ Sbjct: 360 QLVVQLACANQQRHNTNLPNS----ASAIAGIDLSQGAGRATEILCLMNMVTEDELKADD 415 Query: 981 EYEEIMEDVKEECSKFGNVLSVQIPRPTGTDDNVSGVGKIYVEFQNKSETVKAMKALSGR 1160 EYEEI+EDV++ECSK+G V S++IPRP D V GVGK++VEF + S+ +A AL+GR Sbjct: 416 EYEEILEDVRDECSKYGIVRSLEIPRPY-EDHPVPGVGKVFVEFASTSDCQRAQAALTGR 474 Query: 1161 TFSGKVVVTSFYDLEKYKNGFF 1226 F+ + VVTS+YD++KY N F Sbjct: 475 KFANRTVVTSYYDVDKYHNRQF 496
>sp|P36629|U2AF2_SCHPO Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 172 bits (437), Expect = 1e-42 Identities = 118/396 (29%), Positives = 193/396 (48%), Gaps = 13/396 (3%) Frame = +3 Query: 66 PLLELKKNYKYWDVAPTGYENMSAAEFKQIHSGGQVLPSL---------YLTEGSVVNMG 218 P+ + K+ WD+ P GYE ++A + K SG LP L E + G Sbjct: 124 PINQWKRKRSLWDIKPPGYELVTADQAKM--SGVFPLPGAPRAAVTDPEKLLEFARSAEG 181 Query: 219 LTAAEYPSIGNTVSRQARRIYVGNLPLGVTEEGMMEFFNEQIKLKEYTQAEGDPIIAVQI 398 A P + SRQARR+ V +P E+ + F + Y + E +V + Sbjct: 182 SIIAPPPPLQPGASRQARRLVVTGIPNEFVEDAFVSFIEDLFISTTYHKPETKHFSSVNV 241 Query: 399 NTDKNFAFLEFRSVEETNQGLNLDGIVY-HGFALKLRRPRDYVPLPQAFDGIV---SNSM 566 ++NFA LE + E+ L Y + LK +R ++Y+ +PQ + S+ Sbjct: 242 CKEENFAILEVATPEDATFLWGLQSESYSNDVFLKFQRIQNYI-VPQITPEVSQKRSDDY 300 Query: 567 TAGIVQDTPHKLFVGGLPQYLGEDQVKELLQTFGPLRGFNLVKDSTTGLSKGYAFCEYAD 746 V D+ K+++ LP LGEDQV ELL+ FG L F L+K+ G SKG+ FCE+ + Sbjct: 301 AKNDVLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKN 360 Query: 747 HSVTDKACMGLTGMQLGEKRIVVQRACLGAKNSTGIPTGPLMLTQPMMMDPLKMVNVEET 926 S + A GL G ++ Q AC+G + + + + + + + T Sbjct: 361 PSDAEVAISGLDGKDTYGNKLHAQFACVGLNQAMIDKSNGMAILTELAKASSQSI---PT 417 Query: 927 EVLCLHNMVMIDDLNDDEEYEEIMEDVKEECSKFGNVLSVQIPRPTGTDDNVSGVGKIYV 1106 VL LHN++ D++ D +EYE+I E VK + S +G ++ ++IPR GT ++ G GK++V Sbjct: 418 RVLQLHNLITGDEIMDVQEYEDIYESVKTQFSNYGPLIDIKIPRSIGTRNSGLGTGKVFV 477 Query: 1107 EFQNKSETVKAMKALSGRTFSGKVVVTSFYDLEKYK 1214 + + AM+ + G F+ + +V +FY + YK Sbjct: 478 RYSDIRSAEVAMEEMKGCKFNDRTIVIAFYGEDCYK 513
>sp|Q8TAS1|UHMK1_HUMAN Serine/threonine-protein kinase Kist (Kinase interacting with stathmin) (U2AF homology motif kinase 1) Length = 419 Score = 88.6 bits (218), Expect = 3e-17 Identities = 44/100 (44%), Positives = 65/100 (65%) Frame = +3 Query: 924 TEVLCLHNMVMIDDLNDDEEYEEIMEDVKEECSKFGNVLSVQIPRPTGTDDNVSGVGKIY 1103 T VL L N++ D L ++EEYE+++EDVKEEC K+G V+S+ +P+ G G+++ Sbjct: 320 TPVLRLLNVLDDDYLENEEEYEDVVEDVKEECQKYGPVVSLLVPKEN------PGRGQVF 373 Query: 1104 VEFQNKSETVKAMKALSGRTFSGKVVVTSFYDLEKYKNGF 1223 VE+ N ++ A K L+GR F GK VV +FY L YK G+ Sbjct: 374 VEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYKRGY 413
>sp|P97343|UHMK1_MOUSE Serine/threonine-protein kinase Kist (Kinase interacting with stathmin) (U2AF homology motif kinase 1) Length = 419 Score = 87.4 bits (215), Expect = 8e-17 Identities = 43/100 (43%), Positives = 65/100 (65%) Frame = +3 Query: 924 TEVLCLHNMVMIDDLNDDEEYEEIMEDVKEECSKFGNVLSVQIPRPTGTDDNVSGVGKIY 1103 T VL L N++ D L +++EYE+++EDVKEEC K+G V+S+ +P+ G G+++ Sbjct: 320 TPVLRLLNVLDDDYLENEDEYEDVVEDVKEECQKYGPVVSLLVPKEN------PGRGQVF 373 Query: 1104 VEFQNKSETVKAMKALSGRTFSGKVVVTSFYDLEKYKNGF 1223 VE+ N ++ A K L+GR F GK VV +FY L YK G+ Sbjct: 374 VEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYKRGY 413
>sp|Q63285|UHMK1_RAT Serine/threonine-protein kinase Kist (Kinase interacting with stathmin) (U2AF homology motif kinase 1) (PAM COOH-terminal interactor protein 2) (P-CIP2) Length = 419 Score = 87.4 bits (215), Expect = 8e-17 Identities = 43/100 (43%), Positives = 65/100 (65%) Frame = +3 Query: 924 TEVLCLHNMVMIDDLNDDEEYEEIMEDVKEECSKFGNVLSVQIPRPTGTDDNVSGVGKIY 1103 T VL L N++ D L +++EYE+++EDVKEEC K+G V+S+ +P+ G G+++ Sbjct: 320 TPVLRLLNVLDDDYLENEDEYEDVVEDVKEECQKYGPVVSLLVPKEN------PGRGQVF 373 Query: 1104 VEFQNKSETVKAMKALSGRTFSGKVVVTSFYDLEKYKNGF 1223 VE+ N ++ A K L+GR F GK VV +FY L YK G+ Sbjct: 374 VEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYKRGY 413
>sp|O43040|CTF1_SCHPO Cleavage and termination factor 1 (Transcription termination factor ctf1) Length = 363 Score = 64.7 bits (156), Expect = 5e-10 Identities = 35/86 (40%), Positives = 47/86 (54%) Frame = +3 Query: 561 SMTAGIVQDTPHKLFVGGLPQYLGEDQVKELLQTFGPLRGFNLVKDSTTGLSKGYAFCEY 740 SMTAG V +FVG +P + E Q+ E+ GP++ F LV D TG KGY FCE+ Sbjct: 2 SMTAGNV------VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55 Query: 741 ADHSVTDKACMGLTGMQLGEKRIVVQ 818 D T A L +LG ++I V+ Sbjct: 56 FDSETTAMAVRKLNNSELGPRKIRVE 81
Score = 33.1 bits (74), Expect = 1.7
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +3
Query: 276 IYVGNLPLGVTEEGMMEFFNEQIKLKEYTQAEGDPIIAVQINTDKNFAFLEFRSVEET 449
++VGN+P V+E+ M E FN+ +K + ++ + + K + F EF E T
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKL-----VLDPETGSGKGYGFCEFFDSETT 61
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,847,559
Number of Sequences: 369166
Number of extensions: 3288136
Number of successful extensions: 9007
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8866
length of database: 68,354,980
effective HSP length: 113
effective length of database: 47,479,925
effective search space used: 14386417275
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
