Planaria EST Database

DrC_00512

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00512
         (824 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9JKW0|AR6P1_MOUSE  ARL-6-interacting protein 1 (Aip-1) (...    79   1e-14
sp|Q5R454|AR6P1_PONPY  ARL-6-interacting protein 1 (Aip-1)         77   6e-14
sp|Q15041|AR6P1_HUMAN  ARL-6-interacting protein 1 (Aip-1)         76   1e-13
sp|Q9VES1|AR6P1_DROME  ARL-6-interacting protein 1 homolog         74   5e-13
sp|Q8NC44|CB017_HUMAN  Protein C2orf17                             39   0.023
sp|Q6NS82|CB017_MOUSE  Protein C2orf17 homolog                     35   0.25 

>sp|Q9JKW0|AR6P1_MOUSE ARL-6-interacting protein 1 (Aip-1) (TBX2 protein)
          Length = 203

 Score = 79.3 bits (194), Expect = 1e-14
 Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 3/176 (1%)
 Frame = +3

Query: 30  DSQSSN--SDDMDYILTSLEDWREAIVHFDGALNWENPKXXXXXXXXXXXXXXXYWLAEP 203
           D++SSN  + +   +   L+ W E ++  D  L WE                   +  +P
Sbjct: 5   DNRSSNLLAVETASLEEQLQGWGEVMLMADKVLRWERAWFPPAIMGVVSLLFLIIYYLDP 64

Query: 204 SFLMTMGLFGILVSSADYFGPKILQR-YVSGSWTNNKEAKYEDFCRRLLNARNHITKGCN 380
           S L  +  F + +  ADY  P +  R + S  WT  ++ ++ + C  L+  R        
Sbjct: 65  SVLSGVSCFVMFLCLADYLVPILAPRIFGSNKWTTEQQQRFHEICSNLVKTRRRAVGWWK 124

Query: 381 FLLELRRERPYSYFLLVTPLLIIFTILGWKIDNLLLAYLITVFFLLVPGLRYKGLL 548
            L  L+ E+P  YF+ +   L     +G ++ NLLL YLI  F LL+PGL   G++
Sbjct: 125 RLFSLKEEKPKMYFMTMIISLAAVAWVGQQVHNLLLTYLIVTFVLLLPGLNQHGII 180

>sp|Q5R454|AR6P1_PONPY ARL-6-interacting protein 1 (Aip-1)
          Length = 203

 Score = 77.0 bits (188), Expect = 6e-14
 Identities = 47/176 (26%), Positives = 78/176 (44%), Gaps = 3/176 (1%)
 Frame = +3

Query: 30  DSQSSN--SDDMDYILTSLEDWREAIVHFDGALNWENPKXXXXXXXXXXXXXXXYWLAEP 203
           D++SSN  + +   +   L+ W E ++  D  L WE                   +  +P
Sbjct: 5   DNRSSNLLAAETASLEEQLQGWGEVMLMADKVLRWERAWFPPAIMGVVSLVFLIIYYLDP 64

Query: 204 SFLMTMGLFGILVSSADYFGPKILQR-YVSGSWTNNKEAKYEDFCRRLLNARNHITKGCN 380
           S L  +  F + +  ADY  P +  R + S  WT  ++ ++ + C  L+  R        
Sbjct: 65  SVLSGVSCFVMFLCLADYLVPILAPRIFGSNKWTTEQQQRFHEICSNLVKTRRRAVGWWK 124

Query: 381 FLLELRRERPYSYFLLVTPLLIIFTILGWKIDNLLLAYLITVFFLLVPGLRYKGLL 548
            L  L+ E+P  YF+ +   L     +G ++ NLLL YLI    LL+PGL   G++
Sbjct: 125 RLFTLKEEKPKMYFMTMIVSLAAVAWVGQQVHNLLLTYLIVTSLLLLPGLNQHGII 180

>sp|Q15041|AR6P1_HUMAN ARL-6-interacting protein 1 (Aip-1)
          Length = 203

 Score = 75.9 bits (185), Expect = 1e-13
 Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 1/158 (0%)
 Frame = +3

Query: 78  LEDWREAIVHFDGALNWENPKXXXXXXXXXXXXXXXYWLAEPSFLMTMGLFGILVSSADY 257
           L+ W E ++  D  L WE                   +  +PS L  +  F + +  ADY
Sbjct: 23  LQGWGEVMLMADKVLRWERAWFPPAIMGVVSLVFLIIYYLDPSVLSGVSCFVMFLCLADY 82

Query: 258 FGPKILQR-YVSGSWTNNKEAKYEDFCRRLLNARNHITKGCNFLLELRRERPYSYFLLVT 434
             P +  R + S  WT  ++ ++ + C  L+  R         L  L+ E+P  YF+ + 
Sbjct: 83  LVPILAPRIFGSNKWTTEQQQRFHEICSNLVKTRRRAVGWWKRLFTLKEEKPKMYFMTMI 142

Query: 435 PLLIIFTILGWKIDNLLLAYLITVFFLLVPGLRYKGLL 548
             L     +G ++ NLLL YLI    LL+PGL   G++
Sbjct: 143 VSLAAVAWVGQQVHNLLLTYLIVTSLLLLPGLNQHGII 180

>sp|Q9VES1|AR6P1_DROME ARL-6-interacting protein 1 homolog
          Length = 197

 Score = 73.9 bits (180), Expect = 5e-13
 Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 2/188 (1%)
 Frame = +3

Query: 33  SQSSNSDDMDYILTSLEDWREAIVHFDGALNWENPKXXXXXXXXXXXXXXXYWLAEPSFL 212
           SQ      ++ +   LE +R AIV   G L WE                   W  + S +
Sbjct: 4   SQVDQKRALNKLKHDLEPFRTAIVGAYGVLTWEKQYYAGVVFGVISCLYLVLWYLDLSLI 63

Query: 213 MTMGLFGILVSSADYFGPKILQRYVSG-SWTNNKEAKYEDFCRRLLNARNHITKGCNFLL 389
             + L G++    +Y  P + +    G +W  ++EAK+ED C ++   +  +     +L 
Sbjct: 64  TLLSLLGVISILLNYAFPMVSRLIFGGVNWDGDQEAKFEDVCGQVCAVKGSLVVWYEYLF 123

Query: 390 ELRRERPYSYFLLVTPL-LIIFTILGWKIDNLLLAYLITVFFLLVPGLRYKGLLQIFTER 566
               ER  + F++V  L L+    +G  I+NLLL YL T+  L+ PGL+ K + +  T+R
Sbjct: 124 N---ERKSTVFVIVMSLGLLAMAWIGAIINNLLLMYLATLLILMWPGLQNKDIFKAITQR 180

Query: 567 LKPFLKSK 590
               +  K
Sbjct: 181 ASKIINEK 188

>sp|Q8NC44|CB017_HUMAN Protein C2orf17
          Length = 543

 Score = 38.5 bits (88), Expect = 0.023
 Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 18/186 (9%)
 Frame = +3

Query: 78  LEDWREAIVHFDGALNWENPKXXXXXXXXXXXXXXXYWLAE-----PSFLMTMGLFGILV 242
           L  W   +      L WE P                +WL       P FL+++ L    +
Sbjct: 60  LRGWEAVLAAAQRLLVWEKP---LHSLVTAAALNGLFWLLSSSSLRPFFLLSVSLLAYFL 116

Query: 243 SSADYFGPKILQRYVS-------------GSWTNNKEAKYEDFCRRLLNARNHITKGCNF 383
              D + P+ L    +             GS          + CR L  +          
Sbjct: 117 --LDLWQPRFLPDVSASSPEEPHSDSEGAGSGARPHLLSVPELCRYLAESWLTFQIHLQE 174

Query: 384 LLELRRERPYSYFLLVTPLLIIFTILGWKIDNLLLAYLITVFFLLVPGLRYKGLLQIFTE 563
           LL+ +R+ P  + + V     +  +LG  +  ++++Y++ +  LL P + Y  L+Q    
Sbjct: 175 LLQYKRQNPAQFCVRVCSGCAVLAVLGHYVPGIMISYIVLLSILLWPLVVYHELIQRMYT 234

Query: 564 RLKPFL 581
           RL+P L
Sbjct: 235 RLEPLL 240

>sp|Q6NS82|CB017_MOUSE Protein C2orf17 homolog
          Length = 541

 Score = 35.0 bits (79), Expect = 0.25
 Identities = 17/66 (25%), Positives = 34/66 (51%)
 Frame = +3

Query: 384 LLELRRERPYSYFLLVTPLLIIFTILGWKIDNLLLAYLITVFFLLVPGLRYKGLLQIFTE 563
           LL+ +R+ P  +         +  +LG  +  ++++Y++ +  LL P + Y  L+Q    
Sbjct: 170 LLQYKRQNPAQFCARGCAACAVLAVLGHYVPGVMISYIVLLSILLWPLVVYHELIQRMYT 229

Query: 564 RLKPFL 581
           RL+P L
Sbjct: 230 RLEPLL 235

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,565,625
Number of Sequences: 369166
Number of extensions: 1535113
Number of successful extensions: 3231
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3226
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7956112725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00512

  1. Dr_sW_013_H06
  2. Dr_sW_017_F01
  3. Dr_sW_014_N20