Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_N20
(543 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9JKW0|AR6P1_MOUSE ARL-6-interacting protein 1 (Aip-1) (... 60 3e-09
sp|Q15041|AR6P1_HUMAN ARL-6-interacting protein 1 (Aip-1) 58 2e-08
sp|Q5R454|AR6P1_PONPY ARL-6-interacting protein 1 (Aip-1) 58 2e-08
sp|Q9VES1|AR6P1_DROME ARL-6-interacting protein 1 homolog 55 1e-07
sp|Q8NC44|CB017_HUMAN Protein C2orf17 38 0.018
sp|Q6NS82|CB017_MOUSE Protein C2orf17 homolog 35 0.12
sp|P52138|YFJW_ECOLI Hypothetical protein yfjW 30 4.9
sp|P09975|YCF2_MARPO Protein ycf2 29 6.5
sp|P38360|ATU1_YEAST Probable copper-transporting ATPase (C... 29 6.5
sp|P44023|Y594_HAEIN Hypothetical protein HI0594 29 8.4
>sp|Q9JKW0|AR6P1_MOUSE ARL-6-interacting protein 1 (Aip-1) (TBX2 protein)
Length = 203
Score = 60.5 bits (145), Expect = 3e-09
Identities = 28/87 (32%), Positives = 44/87 (50%)
Frame = +1
Query: 7 SGSWTNNKEAKYEDFCRRLLNARNHITKGCNFLLELRRERPYSYFLLVTPLLIIFTILGW 186
S WT ++ ++ + C L+ R L L+ E+P YF+ + L +G
Sbjct: 94 SNKWTTEQQQRFHEICSNLVKTRRRAVGWWKRLFSLKEEKPKMYFMTMIISLAAVAWVGQ 153
Query: 187 KIDNLLLAYLITVFFLLVPGLRYKGLL 267
++ NLLL YLI F LL+PGL G++
Sbjct: 154 QVHNLLLTYLIVTFVLLLPGLNQHGII 180
>sp|Q15041|AR6P1_HUMAN ARL-6-interacting protein 1 (Aip-1)
Length = 203
Score = 57.8 bits (138), Expect = 2e-08
Identities = 27/87 (31%), Positives = 43/87 (49%)
Frame = +1
Query: 7 SGSWTNNKEAKYEDFCRRLLNARNHITKGCNFLLELRRERPYSYFLLVTPLLIIFTILGW 186
S WT ++ ++ + C L+ R L L+ E+P YF+ + L +G
Sbjct: 94 SNKWTTEQQQRFHEICSNLVKTRRRAVGWWKRLFTLKEEKPKMYFMTMIVSLAAVAWVGQ 153
Query: 187 KIDNLLLAYLITVFFLLVPGLRYKGLL 267
++ NLLL YLI LL+PGL G++
Sbjct: 154 QVHNLLLTYLIVTSLLLLPGLNQHGII 180
>sp|Q5R454|AR6P1_PONPY ARL-6-interacting protein 1 (Aip-1)
Length = 203
Score = 57.8 bits (138), Expect = 2e-08
Identities = 27/87 (31%), Positives = 43/87 (49%)
Frame = +1
Query: 7 SGSWTNNKEAKYEDFCRRLLNARNHITKGCNFLLELRRERPYSYFLLVTPLLIIFTILGW 186
S WT ++ ++ + C L+ R L L+ E+P YF+ + L +G
Sbjct: 94 SNKWTTEQQQRFHEICSNLVKTRRRAVGWWKRLFTLKEEKPKMYFMTMIVSLAAVAWVGQ 153
Query: 187 KIDNLLLAYLITVFFLLVPGLRYKGLL 267
++ NLLL YLI LL+PGL G++
Sbjct: 154 QVHNLLLTYLIVTSLLLLPGLNQHGII 180
>sp|Q9VES1|AR6P1_DROME ARL-6-interacting protein 1 homolog
Length = 197
Score = 54.7 bits (130), Expect = 1e-07
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Frame = +1
Query: 13 SWTNNKEAKYEDFCRRLLNARNHITKGCNFLLELRRERPYSYFLLVTPL-LIIFTILGWK 189
+W ++EAK+ED C ++ + + +L ER + F++V L L+ +G
Sbjct: 92 NWDGDQEAKFEDVCGQVCAVKGSLVVWYEYLFN---ERKSTVFVIVMSLGLLAMAWIGAI 148
Query: 190 IDNLLLAYLITVFFLLVPGLRYKGLLQIFTERLKPFLKSK 309
I+NLLL YL T+ L+ PGL+ K + + T+R + K
Sbjct: 149 INNLLLMYLATLLILMWPGLQNKDIFKAITQRASKIINEK 188
>sp|Q8NC44|CB017_HUMAN Protein C2orf17
Length = 543
Score = 37.7 bits (86), Expect = 0.018
Identities = 18/66 (27%), Positives = 36/66 (54%)
Frame = +1
Query: 103 LLELRRERPYSYFLLVTPLLIIFTILGWKIDNLLLAYLITVFFLLVPGLRYKGLLQIFTE 282
LL+ +R+ P + + V + +LG + ++++Y++ + LL P + Y L+Q
Sbjct: 175 LLQYKRQNPAQFCVRVCSGCAVLAVLGHYVPGIMISYIVLLSILLWPLVVYHELIQRMYT 234
Query: 283 RLKPFL 300
RL+P L
Sbjct: 235 RLEPLL 240
>sp|Q6NS82|CB017_MOUSE Protein C2orf17 homolog
Length = 541
Score = 35.0 bits (79), Expect = 0.12
Identities = 17/66 (25%), Positives = 34/66 (51%)
Frame = +1
Query: 103 LLELRRERPYSYFLLVTPLLIIFTILGWKIDNLLLAYLITVFFLLVPGLRYKGLLQIFTE 282
LL+ +R+ P + + +LG + ++++Y++ + LL P + Y L+Q
Sbjct: 170 LLQYKRQNPAQFCARGCAACAVLAVLGHYVPGVMISYIVLLSILLWPLVVYHELIQRMYT 229
Query: 283 RLKPFL 300
RL+P L
Sbjct: 230 RLEPLL 235
>sp|P52138|YFJW_ECOLI Hypothetical protein yfjW
Length = 567
Score = 29.6 bits (65), Expect = 4.9
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 163 IIFTILGWKIDNLLLA--YLITVFFLLVPGLRYKGLLQIFTERLKPFLKSKCMSSSNLKK 336
I+ I KID +LA Y+ ++FFLL G+ L Q FT F K C S +K
Sbjct: 9 IVRKIFSKKIDFTILAFFYISSIFFLLCSGV----LFQYFT---AAFTKGNCYECS-MKL 60
Query: 337 DYL 345
DY+
Sbjct: 61 DYI 63
>sp|P09975|YCF2_MARPO Protein ycf2
Length = 2136
Score = 29.3 bits (64), Expect = 6.5
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 169 FTILGWKIDNLLLAYLIT-VFFLLVPGLRYKGLLQIFTERLKPFLKSKCMSSSNL 330
FT+ W+ + +L +I FF + L Y +I + LK FLKSK +S L
Sbjct: 1089 FTLEWWEYNTYILLQIIQETFFQITDVLEYFKKKKIIEKNLKFFLKSKKISLKTL 1143
>sp|P38360|ATU1_YEAST Probable copper-transporting ATPase (Cu(2+)-ATPase)
Length = 1216
Score = 29.3 bits (64), Expect = 6.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 494 NHGSSKKTIVPFYYKDYYNSNW 429
NHGS+ +VP+ KD+ N W
Sbjct: 481 NHGSTIDVVVPYAAKDFINEEW 502
>sp|P44023|Y594_HAEIN Hypothetical protein HI0594
Length = 509
Score = 28.9 bits (63), Expect = 8.4
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +1
Query: 115 RRERPYSYFLLVTPLLIIFTILG-WKIDNLLLAYL-ITVFFLLVPGLRYKGLLQIFTE 282
RR+ + F + P++I ++G W + ++L IT+ + + GL K +++ FTE
Sbjct: 300 RRKLILTLFCISFPIMIWGVMVGGWWFPQMAASFLAITIIIMFISGLSEKDIMESFTE 357
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,233,188
Number of Sequences: 369166
Number of extensions: 957849
Number of successful extensions: 2088
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2087
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3734833040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)