Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_H06
(682 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9JKW0|AR6P1_MOUSE ARL-6-interacting protein 1 (Aip-1) (... 79 1e-14
sp|Q15041|AR6P1_HUMAN ARL-6-interacting protein 1 (Aip-1) 76 9e-14
sp|Q5R454|AR6P1_PONPY ARL-6-interacting protein 1 (Aip-1) 76 9e-14
sp|Q9VES1|AR6P1_DROME ARL-6-interacting protein 1 homolog 73 6e-13
sp|Q8NC44|CB017_HUMAN Protein C2orf17 39 0.016
sp|Q6NS82|CB017_MOUSE Protein C2orf17 homolog 35 0.18
sp|P52138|YFJW_ECOLI Hypothetical protein yfjW 30 7.6
sp|P09975|YCF2_MARPO Protein ycf2 29 10.0
>sp|Q9JKW0|AR6P1_MOUSE ARL-6-interacting protein 1 (Aip-1) (TBX2 protein)
Length = 203
Score = 78.6 bits (192), Expect = 1e-14
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 1/158 (0%)
Frame = +3
Query: 78 LEDWREAIVHFDGALNWENPKXXXXXXXXXXXXXXXYWLAEPSFLMTMGLFGILVSSADY 257
L+ W E ++ D L WE + +PS L + F + + ADY
Sbjct: 23 LQGWGEVMLMADKVLRWERAWFPPAIMGVVSLLFLIIYYLDPSVLSGVSCFVMFLCLADY 82
Query: 258 FGPKILQR-YVSGSWTNNKEAKYEDFCRRLLNARNHITKGCNFLLELRRERPYSYFLLVT 434
P + R + S WT ++ ++ + C L+ R L L+ E+P YF+ +
Sbjct: 83 LVPILAPRIFGSNKWTTEQQQRFHEICSNLVKTRRRAVGWWKRLFSLKEEKPKMYFMTMI 142
Query: 435 PLLIIFTILGWKIDNLLLAYLITVFFLLVPGLRYKGLL 548
L +G ++ NLLL YLI F LL+PGL G++
Sbjct: 143 ISLAAVAWVGQQVHNLLLTYLIVTFVLLLPGLNQHGII 180
>sp|Q15041|AR6P1_HUMAN ARL-6-interacting protein 1 (Aip-1)
Length = 203
Score = 75.9 bits (185), Expect = 9e-14
Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 1/158 (0%)
Frame = +3
Query: 78 LEDWREAIVHFDGALNWENPKXXXXXXXXXXXXXXXYWLAEPSFLMTMGLFGILVSSADY 257
L+ W E ++ D L WE + +PS L + F + + ADY
Sbjct: 23 LQGWGEVMLMADKVLRWERAWFPPAIMGVVSLVFLIIYYLDPSVLSGVSCFVMFLCLADY 82
Query: 258 FGPKILQR-YVSGSWTNNKEAKYEDFCRRLLNARNHITKGCNFLLELRRERPYSYFLLVT 434
P + R + S WT ++ ++ + C L+ R L L+ E+P YF+ +
Sbjct: 83 LVPILAPRIFGSNKWTTEQQQRFHEICSNLVKTRRRAVGWWKRLFTLKEEKPKMYFMTMI 142
Query: 435 PLLIIFTILGWKIDNLLLAYLITVFFLLVPGLRYKGLL 548
L +G ++ NLLL YLI LL+PGL G++
Sbjct: 143 VSLAAVAWVGQQVHNLLLTYLIVTSLLLLPGLNQHGII 180
>sp|Q5R454|AR6P1_PONPY ARL-6-interacting protein 1 (Aip-1)
Length = 203
Score = 75.9 bits (185), Expect = 9e-14
Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 1/158 (0%)
Frame = +3
Query: 78 LEDWREAIVHFDGALNWENPKXXXXXXXXXXXXXXXYWLAEPSFLMTMGLFGILVSSADY 257
L+ W E ++ D L WE + +PS L + F + + ADY
Sbjct: 23 LQGWGEVMLMADKVLRWERAWFPPAIMGVVSLVFLIIYYLDPSVLSGVSCFVMFLCLADY 82
Query: 258 FGPKILQR-YVSGSWTNNKEAKYEDFCRRLLNARNHITKGCNFLLELRRERPYSYFLLVT 434
P + R + S WT ++ ++ + C L+ R L L+ E+P YF+ +
Sbjct: 83 LVPILAPRIFGSNKWTTEQQQRFHEICSNLVKTRRRAVGWWKRLFTLKEEKPKMYFMTMI 142
Query: 435 PLLIIFTILGWKIDNLLLAYLITVFFLLVPGLRYKGLL 548
L +G ++ NLLL YLI LL+PGL G++
Sbjct: 143 VSLAAVAWVGQQVHNLLLTYLIVTSLLLLPGLNQHGII 180
>sp|Q9VES1|AR6P1_DROME ARL-6-interacting protein 1 homolog
Length = 197
Score = 73.2 bits (178), Expect = 6e-13
Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 2/173 (1%)
Frame = +3
Query: 78 LEDWREAIVHFDGALNWENPKXXXXXXXXXXXXXXXYWLAEPSFLMTMGLFGILVSSADY 257
LE +R AIV G L WE W + S + + L G++ +Y
Sbjct: 19 LEPFRTAIVGAYGVLTWEKQYYAGVVFGVISCLYLVLWYLDLSLITLLSLLGVISILLNY 78
Query: 258 FGPKILQRYVSG-SWTNNKEAKYEDFCRRLLNARNHITKGCNFLLELRRERPYSYFLLVT 434
P + + G +W ++EAK+ED C ++ + + +L ER + F++V
Sbjct: 79 AFPMVSRLIFGGVNWDGDQEAKFEDVCGQVCAVKGSLVVWYEYLFN---ERKSTVFVIVM 135
Query: 435 PL-LIIFTILGWKIDNLLLAYLITVFFLLVPGLRYKGLLQIFTERLKPFLKSK 590
L L+ +G I+NLLL YL T+ L+ PGL+ K + + T+R + K
Sbjct: 136 SLGLLAMAWIGAIINNLLLMYLATLLILMWPGLQNKDIFKAITQRASKIINEK 188
>sp|Q8NC44|CB017_HUMAN Protein C2orf17
Length = 543
Score = 38.5 bits (88), Expect = 0.016
Identities = 38/186 (20%), Positives = 67/186 (36%), Gaps = 18/186 (9%)
Frame = +3
Query: 78 LEDWREAIVHFDGALNWENPKXXXXXXXXXXXXXXXYWLAE-----PSFLMTMGLFGILV 242
L W + L WE P +WL P FL+++ L +
Sbjct: 60 LRGWEAVLAAAQRLLVWEKP---LHSLVTAAALNGLFWLLSSSSLRPFFLLSVSLLAYFL 116
Query: 243 SSADYFGPKILQRYVS-------------GSWTNNKEAKYEDFCRRLLNARNHITKGCNF 383
D + P+ L + GS + CR L +
Sbjct: 117 --LDLWQPRFLPDVSASSPEEPHSDSEGAGSGARPHLLSVPELCRYLAESWLTFQIHLQE 174
Query: 384 LLELRRERPYSYFLLVTPLLIIFTILGWKIDNLLLAYLITVFFLLVPGLRYKGLLQIFTE 563
LL+ +R+ P + + V + +LG + ++++Y++ + LL P + Y L+Q
Sbjct: 175 LLQYKRQNPAQFCVRVCSGCAVLAVLGHYVPGIMISYIVLLSILLWPLVVYHELIQRMYT 234
Query: 564 RLKPFL 581
RL+P L
Sbjct: 235 RLEPLL 240
>sp|Q6NS82|CB017_MOUSE Protein C2orf17 homolog
Length = 541
Score = 35.0 bits (79), Expect = 0.18
Identities = 17/66 (25%), Positives = 34/66 (51%)
Frame = +3
Query: 384 LLELRRERPYSYFLLVTPLLIIFTILGWKIDNLLLAYLITVFFLLVPGLRYKGLLQIFTE 563
LL+ +R+ P + + +LG + ++++Y++ + LL P + Y L+Q
Sbjct: 170 LLQYKRQNPAQFCARGCAACAVLAVLGHYVPGVMISYIVLLSILLWPLVVYHELIQRMYT 229
Query: 564 RLKPFL 581
RL+P L
Sbjct: 230 RLEPLL 235
>sp|P52138|YFJW_ECOLI Hypothetical protein yfjW
Length = 567
Score = 29.6 bits (65), Expect = 7.6
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +3
Query: 444 IIFTILGWKIDNLLLA--YLITVFFLLVPGLRYKGLLQIFTERLKPFLKSKCMSSSNLKK 617
I+ I KID +LA Y+ ++FFLL G+ L Q FT F K C S +K
Sbjct: 9 IVRKIFSKKIDFTILAFFYISSIFFLLCSGV----LFQYFT---AAFTKGNCYECS-MKL 60
Query: 618 DYL 626
DY+
Sbjct: 61 DYI 63
>sp|P09975|YCF2_MARPO Protein ycf2
Length = 2136
Score = 29.3 bits (64), Expect = 10.0
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 450 FTILGWKIDNLLLAYLIT-VFFLLVPGLRYKGLLQIFTERLKPFLKSKCMSSSNL 611
FT+ W+ + +L +I FF + L Y +I + LK FLKSK +S L
Sbjct: 1089 FTLEWWEYNTYILLQIIQETFFQITDVLEYFKKKKIIEKNLKFFLKSKKISLKTL 1143
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,306,088
Number of Sequences: 369166
Number of extensions: 1347467
Number of successful extensions: 3025
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3020
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5782011865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)