Planaria EST Database

DrC_00511

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00511
         (400 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P08708|RS17_HUMAN  40S ribosomal protein S17                   161   5e-40
sp|P63273|RS17_CANFA  40S ribosomal protein S17 >gi|54036319...   161   5e-40
sp|Q90YQ6|RS17_ICTPU  40S ribosomal protein S17                   161   5e-40
sp|P08636|RS17_CHICK  40S ribosomal protein S17 >gi|54036413...   161   5e-40
sp|P04644|RS17_RAT  40S ribosomal protein S17                     160   8e-40
sp|Q9U9L1|RS17_ANOGA  40S ribosomal protein S17                   147   6e-36
sp|P17704|RS17_DROME  40S ribosomal protein S17                   146   2e-35
sp|P49215|RS17_LYCES  40S ribosomal protein S17                   146   2e-35
sp|Q9SQZ1|RS17C_ARATH  40S ribosomal protein S17-3                145   2e-35
sp|Q962R2|RS17_SPOFR  40S ribosomal protein S17                   144   5e-35

>sp|P08708|RS17_HUMAN 40S ribosomal protein S17
          Length = 135

 Score =  161 bits (407), Expect = 5e-40
 Identities = 85/115 (73%), Positives = 96/115 (83%), Gaps = 4/115 (3%)
 Frame = +2

Query: 2   KTVKKASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPV 181
           KTVKKA+R IIE YY++LG DFHTNK+V +EIA+IPSK+LRNKIAG+ THLMKRIQ GPV
Sbjct: 7   KTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPV 66

Query: 182 RGISIKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDI----NLNVT 334
           RGISIKLQEEERERRDNYVPEVSAL  +  +EVD  T+EMLK LD     NL VT
Sbjct: 67  RGISIKLQEEERERRDNYVPEVSALDQEI-IEVDPDTKEMLKLLDFGSLSNLQVT 120

>sp|P63273|RS17_CANFA 40S ribosomal protein S17
 sp|Q6QAP7|RS17_PIG 40S ribosomal protein S17
 sp|P63276|RS17_MOUSE 40S ribosomal protein S17
 sp|P63275|RS17_FELCA 40S ribosomal protein S17
 sp|P63274|RS17_CRIGR 40S ribosomal protein S17
          Length = 135

 Score =  161 bits (407), Expect = 5e-40
 Identities = 85/115 (73%), Positives = 96/115 (83%), Gaps = 4/115 (3%)
 Frame = +2

Query: 2   KTVKKASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPV 181
           KTVKKA+R IIE YY++LG DFHTNK+V +EIA+IPSK+LRNKIAG+ THLMKRIQ GPV
Sbjct: 7   KTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPV 66

Query: 182 RGISIKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDI----NLNVT 334
           RGISIKLQEEERERRDNYVPEVSAL  +  +EVD  T+EMLK LD     NL VT
Sbjct: 67  RGISIKLQEEERERRDNYVPEVSALDQEI-IEVDPDTKEMLKLLDFGSLSNLQVT 120

>sp|Q90YQ6|RS17_ICTPU 40S ribosomal protein S17
          Length = 134

 Score =  161 bits (407), Expect = 5e-40
 Identities = 85/115 (73%), Positives = 96/115 (83%), Gaps = 4/115 (3%)
 Frame = +2

Query: 2   KTVKKASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPV 181
           KTVKKA+R IIE YY++LG DFHTNK+V +EIA+IPSK+LRNKIAG+ THLMKRIQ GPV
Sbjct: 7   KTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPV 66

Query: 182 RGISIKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDI----NLNVT 334
           RGISIKLQEEERERRDNYVPEVSAL  +  +EVD  T+EMLK LD     NL VT
Sbjct: 67  RGISIKLQEEERERRDNYVPEVSALDQEI-IEVDPDTKEMLKLLDFGSLSNLQVT 120

>sp|P08636|RS17_CHICK 40S ribosomal protein S17
 sp|Q7ZUB2|RS17_COTJA 40S ribosomal protein S17
          Length = 135

 Score =  161 bits (407), Expect = 5e-40
 Identities = 85/115 (73%), Positives = 96/115 (83%), Gaps = 4/115 (3%)
 Frame = +2

Query: 2   KTVKKASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPV 181
           KTVKKA+R IIE YY++LG DFHTNK+V +EIA+IPSK+LRNKIAG+ THLMKRIQ GPV
Sbjct: 7   KTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPV 66

Query: 182 RGISIKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDI----NLNVT 334
           RGISIKLQEEERERRDNYVPEVSAL  +  +EVD  T+EMLK LD     NL VT
Sbjct: 67  RGISIKLQEEERERRDNYVPEVSALDQEI-IEVDPDTKEMLKLLDFGSLSNLQVT 120

>sp|P04644|RS17_RAT 40S ribosomal protein S17
          Length = 135

 Score =  160 bits (405), Expect = 8e-40
 Identities = 85/115 (73%), Positives = 95/115 (82%), Gaps = 4/115 (3%)
 Frame = +2

Query: 2   KTVKKASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPV 181
           KTVKKA+R IIE YY++LG DFHTNK+V +EIA+IPSK LRNKIAG+ THLMKRIQ GPV
Sbjct: 7   KTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKNLRNKIAGYVTHLMKRIQRGPV 66

Query: 182 RGISIKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDI----NLNVT 334
           RGISIKLQEEERERRDNYVPEVSAL  +  +EVD  T+EMLK LD     NL VT
Sbjct: 67  RGISIKLQEEERERRDNYVPEVSALDQEI-IEVDPDTKEMLKLLDFGSLSNLQVT 120

>sp|Q9U9L1|RS17_ANOGA 40S ribosomal protein S17
          Length = 131

 Score =  147 bits (372), Expect = 6e-36
 Identities = 76/116 (65%), Positives = 93/116 (80%)
 Frame = +2

Query: 2   KTVKKASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPV 181
           KT+KKAS+ IIE YY++L  DF TNK++++E+A+IP+K LRNKIAGF THLMKR++   V
Sbjct: 7   KTIKKASKVIIEKYYTRLTMDFDTNKRIVEEVAIIPTKPLRNKIAGFVTHLMKRLRHSQV 66

Query: 182 RGISIKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDINLNVTVNENN 349
           RGISIKLQEEERERRDNYVP+VSAL  D  +EVD  T+EMLK LD N N+ V   N
Sbjct: 67  RGISIKLQEEERERRDNYVPDVSALEQDI-IEVDPETKEMLKHLDFN-NIVVQLTN 120

>sp|P17704|RS17_DROME 40S ribosomal protein S17
          Length = 131

 Score =  146 bits (368), Expect = 2e-35
 Identities = 77/126 (61%), Positives = 96/126 (76%), Gaps = 4/126 (3%)
 Frame = +2

Query: 2   KTVKKASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPV 181
           KTVKKA++ IIE YY++L  DFHTNK++ +E+A+IP+K LRNKIAG+ THLM R++   V
Sbjct: 7   KTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQV 66

Query: 182 RGISIKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDIN----LNVTVNENN 349
           RGISIKLQEEERERRDNYVP VSAL  D  +EVD+ T+EMLK LD +    L +T    N
Sbjct: 67  RGISIKLQEEERERRDNYVPAVSALEQDI-IEVDADTKEMLKLLDFHNIRGLQLTQPNTN 125

Query: 350 GQGKRN 367
             G+RN
Sbjct: 126 NFGRRN 131

>sp|P49215|RS17_LYCES 40S ribosomal protein S17
          Length = 144

 Score =  146 bits (368), Expect = 2e-35
 Identities = 72/107 (67%), Positives = 90/107 (84%)
 Frame = +2

Query: 2   KTVKKASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPV 181
           KTVKK+SR +IE YYSK+  DFHTNKK+++E+A+IPSKRLRNKIAGF+THLMKRIQ GPV
Sbjct: 7   KTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPV 66

Query: 182 RGISIKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDIN 322
           RGIS+KLQEEERERR ++VP+ SA+  D  +EVD  T +ML  L ++
Sbjct: 67  RGISLKLQEEERERRMDFVPDESAIKTDL-IEVDKETLDMLSALGMS 112

>sp|Q9SQZ1|RS17C_ARATH 40S ribosomal protein S17-3
          Length = 140

 Score =  145 bits (367), Expect = 2e-35
 Identities = 72/107 (67%), Positives = 91/107 (85%)
 Frame = +2

Query: 2   KTVKKASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPV 181
           KTVKK+SR +IE YYS++  DFHTNKK+++E+A+IPSKRLRNKIAGF+THLMKRIQ GPV
Sbjct: 7   KTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPV 66

Query: 182 RGISIKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDIN 322
           RGIS+KLQEEERERR ++VP+ SA+ ID  ++VD  T EML  L ++
Sbjct: 67  RGISLKLQEEERERRMDFVPDESAIKID-DVKVDKETLEMLASLGMS 112

>sp|Q962R2|RS17_SPOFR 40S ribosomal protein S17
          Length = 133

 Score =  144 bits (364), Expect = 5e-35
 Identities = 74/107 (69%), Positives = 89/107 (83%)
 Frame = +2

Query: 2   KTVKKASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPV 181
           KTVKKA++ IIE YY++L  DF TNK++ +EIA+IP+K LRNKIAGFATHLM+R++   V
Sbjct: 7   KTVKKAAKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQV 66

Query: 182 RGISIKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDIN 322
           RGISIKLQEEERERRDNYVPEVSAL  D  +EVD  T++MLK LD N
Sbjct: 67  RGISIKLQEEERERRDNYVPEVSALEHDI-IEVDPDTKDMLKMLDFN 112

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,813,697
Number of Sequences: 369166
Number of extensions: 680035
Number of successful extensions: 1973
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1964
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1708532300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00511

  1. Dr_sW_013_H01
  2. Dr_sW_027_K10