Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_K10
(389 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P08708|RS17_HUMAN 40S ribosomal protein S17 154 8e-38
sp|P63273|RS17_CANFA 40S ribosomal protein S17 >gi|54036319... 154 8e-38
sp|Q90YQ6|RS17_ICTPU 40S ribosomal protein S17 154 8e-38
sp|P08636|RS17_CHICK 40S ribosomal protein S17 >gi|54036413... 154 8e-38
sp|P04644|RS17_RAT 40S ribosomal protein S17 153 1e-37
sp|Q9U9L1|RS17_ANOGA 40S ribosomal protein S17 140 7e-34
sp|P17704|RS17_DROME 40S ribosomal protein S17 139 3e-33
sp|P49215|RS17_LYCES 40S ribosomal protein S17 139 3e-33
sp|Q9SQZ1|RS17C_ARATH 40S ribosomal protein S17-3 138 3e-33
sp|Q962R2|RS17_SPOFR 40S ribosomal protein S17 137 8e-33
>sp|P08708|RS17_HUMAN 40S ribosomal protein S17
Length = 135
Score = 154 bits (388), Expect = 8e-38
Identities = 81/111 (72%), Positives = 92/111 (82%), Gaps = 4/111 (3%)
Frame = +3
Query: 3 KASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPVRGIS 182
KA+R IIE YY++LG DFHTNK+V +EIA+IPSK+LRNKIAG+ THLMKRIQ GPVRGIS
Sbjct: 11 KAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGIS 70
Query: 183 IKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDI----NLNVT 323
IKLQEEERERRDNYVPEVSAL + +EVD T+EMLK LD NL VT
Sbjct: 71 IKLQEEERERRDNYVPEVSALDQEI-IEVDPDTKEMLKLLDFGSLSNLQVT 120
>sp|P63273|RS17_CANFA 40S ribosomal protein S17
sp|Q6QAP7|RS17_PIG 40S ribosomal protein S17
sp|P63276|RS17_MOUSE 40S ribosomal protein S17
sp|P63275|RS17_FELCA 40S ribosomal protein S17
sp|P63274|RS17_CRIGR 40S ribosomal protein S17
Length = 135
Score = 154 bits (388), Expect = 8e-38
Identities = 81/111 (72%), Positives = 92/111 (82%), Gaps = 4/111 (3%)
Frame = +3
Query: 3 KASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPVRGIS 182
KA+R IIE YY++LG DFHTNK+V +EIA+IPSK+LRNKIAG+ THLMKRIQ GPVRGIS
Sbjct: 11 KAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGIS 70
Query: 183 IKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDI----NLNVT 323
IKLQEEERERRDNYVPEVSAL + +EVD T+EMLK LD NL VT
Sbjct: 71 IKLQEEERERRDNYVPEVSALDQEI-IEVDPDTKEMLKLLDFGSLSNLQVT 120
>sp|Q90YQ6|RS17_ICTPU 40S ribosomal protein S17
Length = 134
Score = 154 bits (388), Expect = 8e-38
Identities = 81/111 (72%), Positives = 92/111 (82%), Gaps = 4/111 (3%)
Frame = +3
Query: 3 KASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPVRGIS 182
KA+R IIE YY++LG DFHTNK+V +EIA+IPSK+LRNKIAG+ THLMKRIQ GPVRGIS
Sbjct: 11 KAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGIS 70
Query: 183 IKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDI----NLNVT 323
IKLQEEERERRDNYVPEVSAL + +EVD T+EMLK LD NL VT
Sbjct: 71 IKLQEEERERRDNYVPEVSALDQEI-IEVDPDTKEMLKLLDFGSLSNLQVT 120
>sp|P08636|RS17_CHICK 40S ribosomal protein S17
sp|Q7ZUB2|RS17_COTJA 40S ribosomal protein S17
Length = 135
Score = 154 bits (388), Expect = 8e-38
Identities = 81/111 (72%), Positives = 92/111 (82%), Gaps = 4/111 (3%)
Frame = +3
Query: 3 KASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPVRGIS 182
KA+R IIE YY++LG DFHTNK+V +EIA+IPSK+LRNKIAG+ THLMKRIQ GPVRGIS
Sbjct: 11 KAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGIS 70
Query: 183 IKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDI----NLNVT 323
IKLQEEERERRDNYVPEVSAL + +EVD T+EMLK LD NL VT
Sbjct: 71 IKLQEEERERRDNYVPEVSALDQEI-IEVDPDTKEMLKLLDFGSLSNLQVT 120
>sp|P04644|RS17_RAT 40S ribosomal protein S17
Length = 135
Score = 153 bits (386), Expect = 1e-37
Identities = 81/111 (72%), Positives = 91/111 (81%), Gaps = 4/111 (3%)
Frame = +3
Query: 3 KASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPVRGIS 182
KA+R IIE YY++LG DFHTNK+V +EIA+IPSK LRNKIAG+ THLMKRIQ GPVRGIS
Sbjct: 11 KAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKNLRNKIAGYVTHLMKRIQRGPVRGIS 70
Query: 183 IKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDI----NLNVT 323
IKLQEEERERRDNYVPEVSAL + +EVD T+EMLK LD NL VT
Sbjct: 71 IKLQEEERERRDNYVPEVSALDQEI-IEVDPDTKEMLKLLDFGSLSNLQVT 120
>sp|Q9U9L1|RS17_ANOGA 40S ribosomal protein S17
Length = 131
Score = 140 bits (354), Expect = 7e-34
Identities = 73/112 (65%), Positives = 89/112 (79%)
Frame = +3
Query: 3 KASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPVRGIS 182
KAS+ IIE YY++L DF TNK++++E+A+IP+K LRNKIAGF THLMKR++ VRGIS
Sbjct: 11 KASKVIIEKYYTRLTMDFDTNKRIVEEVAIIPTKPLRNKIAGFVTHLMKRLRHSQVRGIS 70
Query: 183 IKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDINLNVTVNENN 338
IKLQEEERERRDNYVP+VSAL D +EVD T+EMLK LD N N+ V N
Sbjct: 71 IKLQEEERERRDNYVPDVSALEQDI-IEVDPETKEMLKHLDFN-NIVVQLTN 120
>sp|P17704|RS17_DROME 40S ribosomal protein S17
Length = 131
Score = 139 bits (349), Expect = 3e-33
Identities = 73/122 (59%), Positives = 92/122 (75%), Gaps = 4/122 (3%)
Frame = +3
Query: 3 KASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPVRGIS 182
KA++ IIE YY++L DFHTNK++ +E+A+IP+K LRNKIAG+ THLM R++ VRGIS
Sbjct: 11 KAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGIS 70
Query: 183 IKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDIN----LNVTVNENNGQGK 350
IKLQEEERERRDNYVP VSAL D +EVD+ T+EMLK LD + L +T N G+
Sbjct: 71 IKLQEEERERRDNYVPAVSALEQDI-IEVDADTKEMLKLLDFHNIRGLQLTQPNTNNFGR 129
Query: 351 RN 356
RN
Sbjct: 130 RN 131
>sp|P49215|RS17_LYCES 40S ribosomal protein S17
Length = 144
Score = 139 bits (349), Expect = 3e-33
Identities = 68/103 (66%), Positives = 86/103 (83%)
Frame = +3
Query: 3 KASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPVRGIS 182
K+SR +IE YYSK+ DFHTNKK+++E+A+IPSKRLRNKIAGF+THLMKRIQ GPVRGIS
Sbjct: 11 KSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGIS 70
Query: 183 IKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDIN 311
+KLQEEERERR ++VP+ SA+ D +EVD T +ML L ++
Sbjct: 71 LKLQEEERERRMDFVPDESAIKTDL-IEVDKETLDMLSALGMS 112
>sp|Q9SQZ1|RS17C_ARATH 40S ribosomal protein S17-3
Length = 140
Score = 138 bits (348), Expect = 3e-33
Identities = 68/103 (66%), Positives = 87/103 (84%)
Frame = +3
Query: 3 KASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPVRGIS 182
K+SR +IE YYS++ DFHTNKK+++E+A+IPSKRLRNKIAGF+THLMKRIQ GPVRGIS
Sbjct: 11 KSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGIS 70
Query: 183 IKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDIN 311
+KLQEEERERR ++VP+ SA+ ID ++VD T EML L ++
Sbjct: 71 LKLQEEERERRMDFVPDESAIKID-DVKVDKETLEMLASLGMS 112
>sp|Q962R2|RS17_SPOFR 40S ribosomal protein S17
Length = 133
Score = 137 bits (345), Expect = 8e-33
Identities = 70/103 (67%), Positives = 85/103 (82%)
Frame = +3
Query: 3 KASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPVRGIS 182
KA++ IIE YY++L DF TNK++ +EIA+IP+K LRNKIAGFATHLM+R++ VRGIS
Sbjct: 11 KAAKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGIS 70
Query: 183 IKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDIN 311
IKLQEEERERRDNYVPEVSAL D +EVD T++MLK LD N
Sbjct: 71 IKLQEEERERRDNYVPEVSALEHDI-IEVDPDTKDMLKMLDFN 112
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,047,650
Number of Sequences: 369166
Number of extensions: 662710
Number of successful extensions: 1919
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1910
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1670473860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)