Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_H01
(395 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P08708|RS17_HUMAN 40S ribosomal protein S17 161 5e-40
sp|P63273|RS17_CANFA 40S ribosomal protein S17 >gi|54036319... 161 5e-40
sp|Q90YQ6|RS17_ICTPU 40S ribosomal protein S17 161 5e-40
sp|P08636|RS17_CHICK 40S ribosomal protein S17 >gi|54036413... 161 5e-40
sp|P04644|RS17_RAT 40S ribosomal protein S17 160 9e-40
sp|Q9U9L1|RS17_ANOGA 40S ribosomal protein S17 147 6e-36
sp|P17704|RS17_DROME 40S ribosomal protein S17 146 2e-35
sp|P49215|RS17_LYCES 40S ribosomal protein S17 146 2e-35
sp|Q9SQZ1|RS17C_ARATH 40S ribosomal protein S17-3 145 2e-35
sp|Q962R2|RS17_SPOFR 40S ribosomal protein S17 144 5e-35
>sp|P08708|RS17_HUMAN 40S ribosomal protein S17
Length = 135
Score = 161 bits (407), Expect = 5e-40
Identities = 85/115 (73%), Positives = 96/115 (83%), Gaps = 4/115 (3%)
Frame = +2
Query: 2 KTVKKASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPV 181
KTVKKA+R IIE YY++LG DFHTNK+V +EIA+IPSK+LRNKIAG+ THLMKRIQ GPV
Sbjct: 7 KTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPV 66
Query: 182 RGISIKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDI----NLNVT 334
RGISIKLQEEERERRDNYVPEVSAL + +EVD T+EMLK LD NL VT
Sbjct: 67 RGISIKLQEEERERRDNYVPEVSALDQEI-IEVDPDTKEMLKLLDFGSLSNLQVT 120
>sp|P63273|RS17_CANFA 40S ribosomal protein S17
sp|Q6QAP7|RS17_PIG 40S ribosomal protein S17
sp|P63276|RS17_MOUSE 40S ribosomal protein S17
sp|P63275|RS17_FELCA 40S ribosomal protein S17
sp|P63274|RS17_CRIGR 40S ribosomal protein S17
Length = 135
Score = 161 bits (407), Expect = 5e-40
Identities = 85/115 (73%), Positives = 96/115 (83%), Gaps = 4/115 (3%)
Frame = +2
Query: 2 KTVKKASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPV 181
KTVKKA+R IIE YY++LG DFHTNK+V +EIA+IPSK+LRNKIAG+ THLMKRIQ GPV
Sbjct: 7 KTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPV 66
Query: 182 RGISIKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDI----NLNVT 334
RGISIKLQEEERERRDNYVPEVSAL + +EVD T+EMLK LD NL VT
Sbjct: 67 RGISIKLQEEERERRDNYVPEVSALDQEI-IEVDPDTKEMLKLLDFGSLSNLQVT 120
>sp|Q90YQ6|RS17_ICTPU 40S ribosomal protein S17
Length = 134
Score = 161 bits (407), Expect = 5e-40
Identities = 85/115 (73%), Positives = 96/115 (83%), Gaps = 4/115 (3%)
Frame = +2
Query: 2 KTVKKASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPV 181
KTVKKA+R IIE YY++LG DFHTNK+V +EIA+IPSK+LRNKIAG+ THLMKRIQ GPV
Sbjct: 7 KTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPV 66
Query: 182 RGISIKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDI----NLNVT 334
RGISIKLQEEERERRDNYVPEVSAL + +EVD T+EMLK LD NL VT
Sbjct: 67 RGISIKLQEEERERRDNYVPEVSALDQEI-IEVDPDTKEMLKLLDFGSLSNLQVT 120
>sp|P08636|RS17_CHICK 40S ribosomal protein S17
sp|Q7ZUB2|RS17_COTJA 40S ribosomal protein S17
Length = 135
Score = 161 bits (407), Expect = 5e-40
Identities = 85/115 (73%), Positives = 96/115 (83%), Gaps = 4/115 (3%)
Frame = +2
Query: 2 KTVKKASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPV 181
KTVKKA+R IIE YY++LG DFHTNK+V +EIA+IPSK+LRNKIAG+ THLMKRIQ GPV
Sbjct: 7 KTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPV 66
Query: 182 RGISIKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDI----NLNVT 334
RGISIKLQEEERERRDNYVPEVSAL + +EVD T+EMLK LD NL VT
Sbjct: 67 RGISIKLQEEERERRDNYVPEVSALDQEI-IEVDPDTKEMLKLLDFGSLSNLQVT 120
>sp|P04644|RS17_RAT 40S ribosomal protein S17
Length = 135
Score = 160 bits (405), Expect = 9e-40
Identities = 85/115 (73%), Positives = 95/115 (82%), Gaps = 4/115 (3%)
Frame = +2
Query: 2 KTVKKASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPV 181
KTVKKA+R IIE YY++LG DFHTNK+V +EIA+IPSK LRNKIAG+ THLMKRIQ GPV
Sbjct: 7 KTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKNLRNKIAGYVTHLMKRIQRGPV 66
Query: 182 RGISIKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDI----NLNVT 334
RGISIKLQEEERERRDNYVPEVSAL + +EVD T+EMLK LD NL VT
Sbjct: 67 RGISIKLQEEERERRDNYVPEVSALDQEI-IEVDPDTKEMLKLLDFGSLSNLQVT 120
>sp|Q9U9L1|RS17_ANOGA 40S ribosomal protein S17
Length = 131
Score = 147 bits (372), Expect = 6e-36
Identities = 76/116 (65%), Positives = 93/116 (80%)
Frame = +2
Query: 2 KTVKKASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPV 181
KT+KKAS+ IIE YY++L DF TNK++++E+A+IP+K LRNKIAGF THLMKR++ V
Sbjct: 7 KTIKKASKVIIEKYYTRLTMDFDTNKRIVEEVAIIPTKPLRNKIAGFVTHLMKRLRHSQV 66
Query: 182 RGISIKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDINLNVTVNENN 349
RGISIKLQEEERERRDNYVP+VSAL D +EVD T+EMLK LD N N+ V N
Sbjct: 67 RGISIKLQEEERERRDNYVPDVSALEQDI-IEVDPETKEMLKHLDFN-NIVVQLTN 120
>sp|P17704|RS17_DROME 40S ribosomal protein S17
Length = 131
Score = 146 bits (368), Expect = 2e-35
Identities = 77/126 (61%), Positives = 96/126 (76%), Gaps = 4/126 (3%)
Frame = +2
Query: 2 KTVKKASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPV 181
KTVKKA++ IIE YY++L DFHTNK++ +E+A+IP+K LRNKIAG+ THLM R++ V
Sbjct: 7 KTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQV 66
Query: 182 RGISIKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDIN----LNVTVNENN 349
RGISIKLQEEERERRDNYVP VSAL D +EVD+ T+EMLK LD + L +T N
Sbjct: 67 RGISIKLQEEERERRDNYVPAVSALEQDI-IEVDADTKEMLKLLDFHNIRGLQLTQPNTN 125
Query: 350 GQGKRN 367
G+RN
Sbjct: 126 NFGRRN 131
>sp|P49215|RS17_LYCES 40S ribosomal protein S17
Length = 144
Score = 146 bits (368), Expect = 2e-35
Identities = 72/107 (67%), Positives = 90/107 (84%)
Frame = +2
Query: 2 KTVKKASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPV 181
KTVKK+SR +IE YYSK+ DFHTNKK+++E+A+IPSKRLRNKIAGF+THLMKRIQ GPV
Sbjct: 7 KTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPV 66
Query: 182 RGISIKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDIN 322
RGIS+KLQEEERERR ++VP+ SA+ D +EVD T +ML L ++
Sbjct: 67 RGISLKLQEEERERRMDFVPDESAIKTDL-IEVDKETLDMLSALGMS 112
>sp|Q9SQZ1|RS17C_ARATH 40S ribosomal protein S17-3
Length = 140
Score = 145 bits (367), Expect = 2e-35
Identities = 72/107 (67%), Positives = 91/107 (85%)
Frame = +2
Query: 2 KTVKKASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPV 181
KTVKK+SR +IE YYS++ DFHTNKK+++E+A+IPSKRLRNKIAGF+THLMKRIQ GPV
Sbjct: 7 KTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPV 66
Query: 182 RGISIKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDIN 322
RGIS+KLQEEERERR ++VP+ SA+ ID ++VD T EML L ++
Sbjct: 67 RGISLKLQEEERERRMDFVPDESAIKID-DVKVDKETLEMLASLGMS 112
>sp|Q962R2|RS17_SPOFR 40S ribosomal protein S17
Length = 133
Score = 144 bits (364), Expect = 5e-35
Identities = 74/107 (69%), Positives = 89/107 (83%)
Frame = +2
Query: 2 KTVKKASRSIIENYYSKLGRDFHTNKKVIDEIAVIPSKRLRNKIAGFATHLMKRIQAGPV 181
KTVKKA++ IIE YY++L DF TNK++ +EIA+IP+K LRNKIAGFATHLM+R++ V
Sbjct: 7 KTVKKAAKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQV 66
Query: 182 RGISIKLQEEERERRDNYVPEVSALYIDAPLEVDSTTQEMLKFLDIN 322
RGISIKLQEEERERRDNYVPEVSAL D +EVD T++MLK LD N
Sbjct: 67 RGISIKLQEEERERRDNYVPEVSALEHDI-IEVDPDTKDMLKMLDFN 112
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,119,965
Number of Sequences: 369166
Number of extensions: 670330
Number of successful extensions: 1941
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1932
length of database: 68,354,980
effective HSP length: 97
effective length of database: 50,435,685
effective search space used: 1714813290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)