Planaria EST Database

DrC_00498

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00498
         (431 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O04057|ASPR_CUCPE  Aspartic proteinase precursor                31   1.3  
sp|Q42456|ASPR1_ORYSA  Aspartic proteinase oryzasin-1 precursor    30   2.8  
sp|Q80W54|FACE1_MOUSE  CAAX prenyl protease 1 homolog (Preny...    29   4.8  
sp|O75844|FACE1_HUMAN  CAAX prenyl protease 1 homolog (Preny...    29   4.8  
sp|Q10363|YDBC_SCHPO  Hypothetical protein C22E12.12 in chro...    29   4.8  
sp|P32528|DUR1_YEAST  Urea amidolyase [Includes: Urea carbox...    29   4.8  
sp|Q66198|R1AB_CVBM  Replicase polyprotein 1ab (pp1ab) (ORF1...    28   8.3  
sp|Q8V6W7|R1AB_CVBQ  Replicase polyprotein 1ab (pp1ab) (ORF1...    28   8.3  
sp|O13035|SAP_CHICK  Proactivator polypeptide precursor [Con...    28   8.3  

>sp|O04057|ASPR_CUCPE Aspartic proteinase precursor
          Length = 513

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 214 GTENQYCTSLLAQYKTQIKTLIINNRPKDEICRTINQC 327
           G  +Q C +++AQY   I  L+++     +IC  IN C
Sbjct: 318 GVVSQQCKAVVAQYGQTIMDLLLSEADPKKICSQINLC 355

>sp|Q42456|ASPR1_ORYSA Aspartic proteinase oryzasin-1 precursor
          Length = 509

 Score = 29.6 bits (65), Expect = 2.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 211 TGTENQYCTSLLAQYKTQIKTLIINNRPKDEICRTINQC 327
           TG  +Q C ++++QY  QI  L++      +IC  +  C
Sbjct: 313 TGVVSQECKTVVSQYGQQILDLLLAETQPSKICSQVGLC 351

>sp|Q80W54|FACE1_MOUSE CAAX prenyl protease 1 homolog (Prenyl protein-specific
           endoprotease 1) (Farnesylated proteins-converting enzyme
           1) (FACE-1) (Zinc metalloproteinase Ste24 homolog)
          Length = 475

 Score = 28.9 bits (63), Expect = 4.8
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 328 NIDLLFGIFHLLVGY*LLMF*FGFYIEQEGLYNIDFLFQFV 206
           N  L F +F +L+G   L   FGFY  Q  L  +  +FQF+
Sbjct: 355 NSFLCFFLFAVLIGRRELFAAFGFYDSQPTLIGLLIIFQFI 395

>sp|O75844|FACE1_HUMAN CAAX prenyl protease 1 homolog (Prenyl protein-specific
           endoprotease 1) (Farnesylated-proteins converting enzyme
           1) (FACE-1) (Zinc metalloproteinase Ste24 homolog)
          Length = 475

 Score = 28.9 bits (63), Expect = 4.8
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 328 NIDLLFGIFHLLVGY*LLMF*FGFYIEQEGLYNIDFLFQFV 206
           N  L F +F +L+G   L   FGFY  Q  L  +  +FQF+
Sbjct: 355 NSFLCFFLFAVLIGRKELFAAFGFYDSQPTLIGLLIIFQFI 395

>sp|Q10363|YDBC_SCHPO Hypothetical protein C22E12.12 in chromosome I
          Length = 96

 Score = 28.9 bits (63), Expect = 4.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 309 PNNKSMFYQSKILRNIRKLFSINQT 383
           PNN++MFY+S  + +  + F IN+T
Sbjct: 20  PNNEAMFYRSSRILHFEEAFVINET 44

>sp|P32528|DUR1_YEAST Urea amidolyase [Includes: Urea carboxylase ; Allophanate hydrolase ]
          Length = 1835

 Score = 28.9 bits (63), Expect = 4.8
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +1

Query: 235  TSLLAQYKTQIKTLIINNRPKDEICRTINQCFTNPKFYGIFESYFL*IKQNFQSIFFVEI 414
            T++  +Y   +  +I++ + +D+    +NQ     K YG   +    +K    S FF + 
Sbjct: 1005 TNISPEYDPTLAKIIVHGKDRDDAISKLNQALEETKVYGCITNIDY-LKSIITSDFFAKA 1063

Query: 415  KV 420
            KV
Sbjct: 1064 KV 1065

>sp|Q66198|R1AB_CVBM Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
            Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28;
            p65; p210 (Papain-like proteinases 1/2)
            (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase
            (3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10;
            p22; p12; Growth factor-like peptide (GFL) (p15);
            RNA-directed RNA polymerase (RdRp) (Pol) (p100); Helicase
            (Hel) (p67); Unknown protein 2; p35; Unknown protein 3]
          Length = 7094

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 262  QIKTLIINNRPKDEICRTINQCFTNPKFYG 351
            ++KT ++N+ P D+ C T  QC+ N  + G
Sbjct: 4130 KLKTQVVNSGP-DQTCNTPTQCYYNNSYNG 4158

>sp|Q8V6W7|R1AB_CVBQ Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
            Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28;
            p65; p210 (Papain-like proteinases 1/2)
            (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase
            (3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10;
            p22; p12; Growth factor-like peptide (GFL) (p15);
            RNA-directed RNA polymerase (RdRp) (Pol) (p100); Helicase
            (Hel) (p67); Unknown protein 2; p35; Unknown protein 3]
          Length = 7059

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 262  QIKTLIINNRPKDEICRTINQCFTNPKFYG 351
            ++KT ++N+ P D+ C T  QC+ N  + G
Sbjct: 4130 KLKTQVVNSGP-DQTCNTPTQCYYNNSYNG 4158

>sp|O13035|SAP_CHICK Proactivator polypeptide precursor [Contains: Saposin A; Saposin B;
           Saposin C; Saposin D]
          Length = 518

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/57 (22%), Positives = 25/57 (43%)
 Frame = +1

Query: 157 NPSLTTIESDLERLCKSRTGTENQYCTSLLAQYKTQIKTLIINNRPKDEICRTINQC 327
           N + T IE+ LE++C     + +  C   + QY+  +  L+        +C  +  C
Sbjct: 420 NATTTEIEALLEKVCHFLPESVSDQCVQFVEQYEPVVVQLLAEMMDPTFVCTKLGVC 476

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,592,560
Number of Sequences: 369166
Number of extensions: 762449
Number of successful extensions: 1755
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1755
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2144903640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00498

  1. Dr_sW_013_D19
  2. Dr_sW_008_I07