Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_I07
(199 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q10363|YDBC_SCHPO Hypothetical protein C22E12.12 in chro... 29 3.9
sp|P69684|ILVB_PORUM Acetolactate synthase large subunit (A... 28 6.6
sp|Q66198|R1AB_CVBM Replicase polyprotein 1ab (pp1ab) (ORF1... 28 6.6
sp|Q8V6W7|R1AB_CVBQ Replicase polyprotein 1ab (pp1ab) (ORF1... 28 6.6
>sp|Q10363|YDBC_SCHPO Hypothetical protein C22E12.12 in chromosome I
Length = 96
Score = 28.9 bits (63), Expect = 3.9
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 77 PNNKSMFYQSKILRNIRKLFSINQT 151
PNN++MFY+S + + + F IN+T
Sbjct: 20 PNNEAMFYRSSRILHFEEAFVINET 44
>sp|P69684|ILVB_PORUM Acetolactate synthase large subunit (AHAS) (Acetohydroxy-acid
synthase large subunit) (ALS)
sp|P69683|ILVB_PORPU Acetolactate synthase large subunit (AHAS) (Acetohydroxy-acid
synthase large subunit) (ALS)
Length = 590
Score = 28.1 bits (61), Expect = 6.6
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +3
Query: 6 GTRAQYKTQIKTLIINNR 59
GT AQYK IK +IINNR
Sbjct: 466 GTIAQYKLPIKIVIINNR 483
>sp|Q66198|R1AB_CVBM Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28;
p65; p210 (Papain-like proteinases 1/2)
(PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase
(3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10;
p22; p12; Growth factor-like peptide (GFL) (p15);
RNA-directed RNA polymerase (RdRp) (Pol) (p100); Helicase
(Hel) (p67); Unknown protein 2; p35; Unknown protein 3]
Length = 7094
Score = 28.1 bits (61), Expect = 6.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 30 QIKTLIINNRPKDEICRTINQCFTNPKFYG 119
++KT ++N+ P D+ C T QC+ N + G
Sbjct: 4130 KLKTQVVNSGP-DQTCNTPTQCYYNNSYNG 4158
>sp|Q8V6W7|R1AB_CVBQ Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28;
p65; p210 (Papain-like proteinases 1/2)
(PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase
(3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10;
p22; p12; Growth factor-like peptide (GFL) (p15);
RNA-directed RNA polymerase (RdRp) (Pol) (p100); Helicase
(Hel) (p67); Unknown protein 2; p35; Unknown protein 3]
Length = 7059
Score = 28.1 bits (61), Expect = 6.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 30 QIKTLIINNRPKDEICRTINQCFTNPKFYG 119
++KT ++N+ P D+ C T QC+ N + G
Sbjct: 4130 KLKTQVVNSGP-DQTCNTPTQCYYNNSYNG 4158
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,894,604
Number of Sequences: 369166
Number of extensions: 377036
Number of successful extensions: 761
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 68,354,980
effective HSP length: 37
effective length of database: 61,519,785
effective search space used: 1722553980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)