Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_D19
(431 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O04057|ASPR_CUCPE Aspartic proteinase precursor 31 1.3
sp|Q42456|ASPR1_ORYSA Aspartic proteinase oryzasin-1 precursor 30 2.8
sp|Q80W54|FACE1_MOUSE CAAX prenyl protease 1 homolog (Preny... 29 4.8
sp|O75844|FACE1_HUMAN CAAX prenyl protease 1 homolog (Preny... 29 4.8
sp|Q10363|YDBC_SCHPO Hypothetical protein C22E12.12 in chro... 29 4.8
sp|P32528|DUR1_YEAST Urea amidolyase [Includes: Urea carbox... 29 4.8
sp|Q66198|R1AB_CVBM Replicase polyprotein 1ab (pp1ab) (ORF1... 28 8.3
sp|Q8V6W7|R1AB_CVBQ Replicase polyprotein 1ab (pp1ab) (ORF1... 28 8.3
sp|O13035|SAP_CHICK Proactivator polypeptide precursor [Con... 28 8.3
>sp|O04057|ASPR_CUCPE Aspartic proteinase precursor
Length = 513
Score = 30.8 bits (68), Expect = 1.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 214 GTENQYCTSLLAQYKTQIKTLIINNRPKDEICRTINQC 327
G +Q C +++AQY I L+++ +IC IN C
Sbjct: 318 GVVSQQCKAVVAQYGQTIMDLLLSEADPKKICSQINLC 355
>sp|Q42456|ASPR1_ORYSA Aspartic proteinase oryzasin-1 precursor
Length = 509
Score = 29.6 bits (65), Expect = 2.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 211 TGTENQYCTSLLAQYKTQIKTLIINNRPKDEICRTINQC 327
TG +Q C ++++QY QI L++ +IC + C
Sbjct: 313 TGVVSQECKTVVSQYGQQILDLLLAETQPSKICSQVGLC 351
>sp|Q80W54|FACE1_MOUSE CAAX prenyl protease 1 homolog (Prenyl protein-specific
endoprotease 1) (Farnesylated proteins-converting enzyme
1) (FACE-1) (Zinc metalloproteinase Ste24 homolog)
Length = 475
Score = 28.9 bits (63), Expect = 4.8
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 328 NIDLLFGIFHLLVGY*LLMF*FGFYIEQEGLYNIDFLFQFV 206
N L F +F +L+G L FGFY Q L + +FQF+
Sbjct: 355 NSFLCFFLFAVLIGRRELFAAFGFYDSQPTLIGLLIIFQFI 395
>sp|O75844|FACE1_HUMAN CAAX prenyl protease 1 homolog (Prenyl protein-specific
endoprotease 1) (Farnesylated-proteins converting enzyme
1) (FACE-1) (Zinc metalloproteinase Ste24 homolog)
Length = 475
Score = 28.9 bits (63), Expect = 4.8
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 328 NIDLLFGIFHLLVGY*LLMF*FGFYIEQEGLYNIDFLFQFV 206
N L F +F +L+G L FGFY Q L + +FQF+
Sbjct: 355 NSFLCFFLFAVLIGRKELFAAFGFYDSQPTLIGLLIIFQFI 395
>sp|Q10363|YDBC_SCHPO Hypothetical protein C22E12.12 in chromosome I
Length = 96
Score = 28.9 bits (63), Expect = 4.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 309 PNNKSMFYQSKILRNIRKLFSINQT 383
PNN++MFY+S + + + F IN+T
Sbjct: 20 PNNEAMFYRSSRILHFEEAFVINET 44
>sp|P32528|DUR1_YEAST Urea amidolyase [Includes: Urea carboxylase ; Allophanate hydrolase ]
Length = 1835
Score = 28.9 bits (63), Expect = 4.8
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +1
Query: 235 TSLLAQYKTQIKTLIINNRPKDEICRTINQCFTNPKFYGIFESYFL*IKQNFQSIFFVEI 414
T++ +Y + +I++ + +D+ +NQ K YG + +K S FF +
Sbjct: 1005 TNISPEYDPTLAKIIVHGKDRDDAISKLNQALEETKVYGCITNIDY-LKSIITSDFFAKA 1063
Query: 415 KV 420
KV
Sbjct: 1064 KV 1065
>sp|Q66198|R1AB_CVBM Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28;
p65; p210 (Papain-like proteinases 1/2)
(PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase
(3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10;
p22; p12; Growth factor-like peptide (GFL) (p15);
RNA-directed RNA polymerase (RdRp) (Pol) (p100); Helicase
(Hel) (p67); Unknown protein 2; p35; Unknown protein 3]
Length = 7094
Score = 28.1 bits (61), Expect = 8.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 262 QIKTLIINNRPKDEICRTINQCFTNPKFYG 351
++KT ++N+ P D+ C T QC+ N + G
Sbjct: 4130 KLKTQVVNSGP-DQTCNTPTQCYYNNSYNG 4158
>sp|Q8V6W7|R1AB_CVBQ Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein) [Includes:
Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28;
p65; p210 (Papain-like proteinases 1/2)
(PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase
(3CL-PRO) (3CLp) (M-PRO) (p27); Unknown protein 1; p10;
p22; p12; Growth factor-like peptide (GFL) (p15);
RNA-directed RNA polymerase (RdRp) (Pol) (p100); Helicase
(Hel) (p67); Unknown protein 2; p35; Unknown protein 3]
Length = 7059
Score = 28.1 bits (61), Expect = 8.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 262 QIKTLIINNRPKDEICRTINQCFTNPKFYG 351
++KT ++N+ P D+ C T QC+ N + G
Sbjct: 4130 KLKTQVVNSGP-DQTCNTPTQCYYNNSYNG 4158
>sp|O13035|SAP_CHICK Proactivator polypeptide precursor [Contains: Saposin A; Saposin B;
Saposin C; Saposin D]
Length = 518
Score = 28.1 bits (61), Expect = 8.3
Identities = 13/57 (22%), Positives = 25/57 (43%)
Frame = +1
Query: 157 NPSLTTIESDLERLCKSRTGTENQYCTSLLAQYKTQIKTLIINNRPKDEICRTINQC 327
N + T IE+ LE++C + + C + QY+ + L+ +C + C
Sbjct: 420 NATTTEIEALLEKVCHFLPESVSDQCVQFVEQYEPVVVQLLAEMMDPTFVCTKLGVC 476
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,546,911
Number of Sequences: 369166
Number of extensions: 760946
Number of successful extensions: 1760
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1760
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2144903640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)