DrC_00488
- Cluster detail
- GO Category :
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00488 (1006 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q9Y4W6|AFG32_HUMAN AFG3-like protein 2 (Paraplegin-like ... 318 2e-86 sp|Q920A7|AFG31_MOUSE AFG3-like protein 1 300 4e-81 sp|P39925|AFG3_YEAST Mitochondrial respiratory chain comple... 193 6e-49 sp|P40341|RCA1_YEAST Mitochondrial respiratory chain comple... 189 8e-48 sp|Q9UQ90|SPG7_HUMAN Paraplegin (Spastic paraplegia protein 7) 163 6e-40 sp|P37476|FTSH_BACSU Cell division protein ftsH homolog 124 4e-28 sp|Q39102|FTSH1_ARATH Cell division protein ftsH homolog 1,... 119 1e-26 sp|Q9FH02|FTSH2_ARATH Cell division protein ftsH homolog 2,... 118 2e-26 sp|O83746|FTSH_TREPA Cell division protein ftsH homolog 118 2e-26 sp|P73437|FTSH3_SYNY3 Cell division protein ftsH homolog 3 118 3e-26
>sp|Q9Y4W6|AFG32_HUMAN AFG3-like protein 2 (Paraplegin-like protein) Length = 797 Score = 318 bits (814), Expect = 2e-86 Identities = 155/219 (70%), Positives = 182/219 (83%) Frame = +1 Query: 304 KK*TIAFHEAGHAVAGWFLQYCDPLLKVSIIPRGNALGYAQYMPKDTYLYTQEQMLDRMC 483 +K T+A+HEAGHAVAGW+L++ DPLLKVSIIPRG LGYAQY+PK+ YLYT+EQ+LDRMC Sbjct: 567 EKKTVAYHEAGHAVAGWYLEHADPLLKVSIIPRGKGLGYAQYLPKEQYLYTKEQLLDRMC 626 Query: 484 MTLAGRASEEIFFSKFCSGAQDDLQKVTQSAYTQIVQLGFSEKVGHLSYDLPQSGDPNGN 663 MTL GRASEEIFF + +GAQDDL+KVTQSAY QIVQ G +EKVG +S+DLP+ GD Sbjct: 627 MTLGGRASEEIFFGRITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQGDMVLE 686 Query: 664 KPYSEKTAQLIDEEARIMVKQAYVRAVDLLSTKKDLVEKVALRLLEKEQIYKSDLVELLG 843 KPYSE TA+LID+E RI++ AY R V LL+ KK VEKVAL LLEKE + K+D+VELLG Sbjct: 687 KPYSEATARLIDDEVRILINDAYKRTVALLTEKKADVEKVALLLLEKEVLDKNDMVELLG 746 Query: 844 ERPFAEKTTYEEFVEGTGSFEEDQELPEGLKDWNKENPK 960 RPFAEK+TYEEFVEGTGS +ED LPEGLKDWNKE K Sbjct: 747 PRPFAEKSTYEEFVEGTGSLDEDTSLPEGLKDWNKEREK 785
Score = 144 bits (364), Expect = 3e-34
Identities = 73/118 (61%), Positives = 90/118 (76%), Gaps = 2/118 (1%)
Frame = +3
Query: 3 RPGRFDRQIYVSLPDIKGRASLFKVHLAPIK--TSINKNEASRKLSARTPGFSGADIANV 176
RPGRFDRQI++ PDIKGRAS+FKVHL P+K +++ K++ +RKL++ TPGFSGAD+ANV
Sbjct: 465 RPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKDKLARKLASLTPGFSGADVANV 524
Query: 177 CNEAALIGARENADDITFKHFELAIERVIAGLEKKTQVLQSNEKMNNSFSRSWSCCRG 350
CNEAALI AR +D I KHFE AIERVI GLEKKTQVLQ EK ++ + G
Sbjct: 525 CNEAALIAARHLSDSINQKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAG 582
>sp|Q920A7|AFG31_MOUSE AFG3-like protein 1 Length = 663 Score = 300 bits (768), Expect = 4e-81 Identities = 141/215 (65%), Positives = 175/215 (81%) Frame = +1 Query: 304 KK*TIAFHEAGHAVAGWFLQYCDPLLKVSIIPRGNALGYAQYMPKDTYLYTQEQMLDRMC 483 +K T+A+HEAGHAV GWFL++ DPLLKVSIIPRG LGYAQY+P++ +LYT+EQ+ DRMC Sbjct: 433 EKTTVAYHEAGHAVVGWFLEHADPLLKVSIIPRGKGLGYAQYLpreQFLYTREQLFDRMC 492 Query: 484 MTLAGRASEEIFFSKFCSGAQDDLQKVTQSAYTQIVQLGFSEKVGHLSYDLPQSGDPNGN 663 M L GR +E++FF + +GAQDDL+KVTQSAY QIVQ G SEK+G +S+D P+ G+ Sbjct: 493 MMLGGRVAEQLFFGQITTGAQDDLRKVTQSAYAQIVQFGMSEKLGQVSFDFPRQGETMVE 552 Query: 664 KPYSEKTAQLIDEEARIMVKQAYVRAVDLLSTKKDLVEKVALRLLEKEQIYKSDLVELLG 843 KPYSE TAQLIDEE R +V+ AY R ++LL+ ++ VEKV RLLEKE + K+D++ELLG Sbjct: 553 KPYSEATAQLIDEEVRCLVRSAYNRTLELLTQCREQVEKVGRRLLEKEVLEKADMIELLG 612 Query: 844 ERPFAEKTTYEEFVEGTGSFEEDQELPEGLKDWNK 948 RPFAEK+TYEEFVEGTGS EED LPEGLKDWNK Sbjct: 613 PRPFAEKSTYEEFVEGTGSLEEDTSLPEGLKDWNK 647
Score = 140 bits (354), Expect = 4e-33
Identities = 71/104 (68%), Positives = 85/104 (81%), Gaps = 2/104 (1%)
Frame = +3
Query: 3 RPGRFDRQIYVSLPDIKGRASLFKVHLAPIKT--SINKNEASRKLSARTPGFSGADIANV 176
RPGRFDRQIY+ PDIKGR+S+FKVHL P+K S++K+ SRKL+A TPGF+GADI+NV
Sbjct: 331 RPGRFDRQIYIGPPDIKGRSSIFKVHLRPLKLDGSLSKDALSRKLAALTPGFTGADISNV 390
Query: 177 CNEAALIGARENADDITFKHFELAIERVIAGLEKKTQVLQSNEK 308
CNEAALI AR + + +HFE AIERVI GLEKKTQVLQ +EK
Sbjct: 391 CNEAALIAARHLSPSVQERHFEQAIERVIGGLEKKTQVLQPSEK 434
>sp|P39925|AFG3_YEAST Mitochondrial respiratory chain complexes assembly protein AFG3 (TAT-binding homolog 10) Length = 761 Score = 193 bits (491), Expect = 6e-49 Identities = 102/206 (49%), Positives = 136/206 (66%), Gaps = 2/206 (0%) Frame = +1 Query: 295 SRMKK*TIAFHEAGHAVAGWFLQYCDPLLKVSIIPRGN-ALGYAQYMPKDTYLYTQEQML 471 S+ +K ++A+HEAGHAV GWFL+Y DPLLKVSIIPRG ALGYAQY+P D YL ++EQ Sbjct: 548 SKEEKRSVAYHEAGHAVCGWFLKYADPLLKVSIIPRGQGALGYAQYLPPDQYLISEEQFR 607 Query: 472 DRMCMTLAGRASEEIFFSKFCSGAQDDLQKVTQSAYTQIVQLGFSEKVGHLSYDLPQSGD 651 RM M L GR SEE+ F SGA DD +KVTQ A + LG S K+G+LS+D G+ Sbjct: 608 HRMIMALGGRVSEELHFPSVTSGAHDDFKKVTQMANAMVTSLGMSPKIGYLSFD-QNDGN 666 Query: 652 PNGNKPYSEKTAQLIDEEARIMVKQAYVRAVDLLSTKKDLVEKVALRLLEKEQIYKSDLV 831 NKP+S KTA+ ID E + +V A+ +LL+ D V+ VA LL KE I + D++ Sbjct: 667 FKVNKPFSNKTARTIDLEVKSIVDDAHRACTELLTKNLDKVDLVAKELLRKEAITREDMI 726 Query: 832 ELLGERPFAEKT-TYEEFVEGTGSFE 906 LLG RPF E+ +E++++ + E Sbjct: 727 RLLGPRPFKERNEAFEKYLDPKSNTE 752
Score = 117 bits (292), Expect = 7e-26
Identities = 63/112 (56%), Positives = 75/112 (66%), Gaps = 5/112 (4%)
Frame = +3
Query: 3 RPGRFDRQIYVSLPDIKGRASLFKVHLA-----PIKTSINKNEASRKLSARTPGFSGADI 167
RPGRFDR I + PD+ GR ++ VHL P+ T + N S KL+ TPGF+GADI
Sbjct: 447 RPGRFDRHIQIDSPDVNGRQQIYLVHLKRLNLDPLLTD-DMNNLSGKLATLTPGFTGADI 505
Query: 168 ANVCNEAALIGARENADDITFKHFELAIERVIAGLEKKTQVLQSNEKMNNSF 323
AN CNEAALI AR N IT HFE AIERVIAGLEKKT+VL EK + ++
Sbjct: 506 ANACNEAALIAARHNDPYITIHHFEQAIERVIAGLEKKTRVLSKEEKRSVAY 557
>sp|P40341|RCA1_YEAST Mitochondrial respiratory chain complexes assembly protein RCA1 (TAT-binding homolog 12) Length = 825 Score = 189 bits (481), Expect = 8e-48 Identities = 98/220 (44%), Positives = 144/220 (65%), Gaps = 1/220 (0%) Frame = +1 Query: 304 KK*TIAFHEAGHAVAGWFLQYCDPLLKVSIIPRGN-ALGYAQYMPKDTYLYTQEQMLDRM 480 +K +A+HEAGHAV GW+L+Y DPLLKVSIIPRG ALGYAQY+P D +L T++Q+ DRM Sbjct: 606 EKKVVAYHEAGHAVCGWYLKYADPLLKVSIIPRGQGALGYAQYLPGDIFLLTEQQLKDRM 665 Query: 481 CMTLAGRASEEIFFSKFCSGAQDDLQKVTQSAYTQIVQLGFSEKVGHLSYDLPQSGDPNG 660 M+L GR SEE+ F SGA DD +KVT A + +LG S+K+G ++Y + D + Sbjct: 666 TMSLGGRVSEELHFPSVTSGASDDFKKVTSMATAMVTELGMSDKIGWVNYQ--KRDDSDL 723 Query: 661 NKPYSEKTAQLIDEEARIMVKQAYVRAVDLLSTKKDLVEKVALRLLEKEQIYKSDLVELL 840 KP+S++T +ID E +V++ + R LL K + VEK+A LL+KE + + D+++LL Sbjct: 724 TKPFSDETGDIIDSEVYRIVQECHDRCTKLLKEKAEDVEKIAQVLLKKEVLTREDMIDLL 783 Query: 841 GERPFAEKTTYEEFVEGTGSFEEDQELPEGLKDWNKENPK 960 G+RPF E+ + F + +E ++ E K+ + PK Sbjct: 784 GKRPFPERN--DAFDKYLNDYETEKIRKEEEKNEKRNEPK 821
Score = 113 bits (283), Expect = 7e-25
Identities = 55/102 (53%), Positives = 73/102 (71%)
Frame = +3
Query: 3 RPGRFDRQIYVSLPDIKGRASLFKVHLAPIKTSINKNEASRKLSARTPGFSGADIANVCN 182
RPGRFDR I + P+++GR ++F VHL +K + + +L+A TPGFSGADIANVCN
Sbjct: 506 RPGRFDRHINIDKPELEGRKAIFAVHLHHLKLAGEIFDLKNRLAALTPGFSGADIANVCN 565
Query: 183 EAALIGARENADDITFKHFELAIERVIAGLEKKTQVLQSNEK 308
EAALI AR + D + HFE AIERVI G+E+K+++L EK
Sbjct: 566 EAALIAARSDEDAVKLNHFEQAIERVIGGVERKSKLLSPEEK 607
>sp|Q9UQ90|SPG7_HUMAN Paraplegin (Spastic paraplegia protein 7) Length = 795 Score = 163 bits (413), Expect = 6e-40 Identities = 83/192 (43%), Positives = 127/192 (66%), Gaps = 2/192 (1%) Frame = +1 Query: 295 SRMKK*TIAFHEAGHAVAGWFLQYCDPLLKVSIIPRGNA-LGYAQYMPKDTYLYTQEQML 471 S+ ++ +AFHE+GHA+ GW L++ + ++KVSI PR NA LG+AQ +P+D +L+T+EQ+ Sbjct: 564 SKEEQKVVAFHESGHALVGWMLEHTEAVMKVSITPRTNAALGFAQMLPRDQHLFTKEQLF 623 Query: 472 DRMCMTLAGRASEEIFFSKFCSGAQDDLQKVTQSAYTQIVQLGFSEKVGHLSYDLPQSGD 651 +RMCM L GRASE + F++ SGAQDDL+KVT+ AY+ + Q G + +G +S+ Q G Sbjct: 624 ERMCMALGGRASEALSFNEVTSGAQDDLRKVTRIAYSMVKQFGMAPGIGPISFPEAQEGL 683 Query: 652 PN-GNKPYSEKTAQLIDEEARIMVKQAYVRAVDLLSTKKDLVEKVALRLLEKEQIYKSDL 828 G +P+S+ Q++D EAR++V +AY +L D ++ +A LLEKE I D+ Sbjct: 684 MGIGRRPFSQGLQQMMDHEARLLVAKAYRHTEKVLQDNLDKLQALANALLEKEVINYEDI 743 Query: 829 VELLGERPFAEK 864 L+G P K Sbjct: 744 EALIGPPPHGPK 755
Score = 101 bits (252), Expect = 3e-21
Identities = 49/110 (44%), Positives = 72/110 (65%)
Frame = +3
Query: 3 RPGRFDRQIYVSLPDIKGRASLFKVHLAPIKTSINKNEASRKLSARTPGFSGADIANVCN 182
RPGR DR +++ LP ++ R +F+ HL +K + + S++L+ TPGFSGADIAN+CN
Sbjct: 467 RPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICN 526
Query: 183 EAALIGARENADDITFKHFELAIERVIAGLEKKTQVLQSNEKMNNSFSRS 332
EAAL ARE + +FE A+ERV+AG KK+++L E+ +F S
Sbjct: 527 EAALHAAREGHTSVHTLNFEYAVERVLAGTAKKSKILSKEEQKVVAFHES 576
>sp|P37476|FTSH_BACSU Cell division protein ftsH homolog Length = 637 Score = 124 bits (311), Expect = 4e-28 Identities = 68/197 (34%), Positives = 110/197 (55%), Gaps = 7/197 (3%) Frame = +1 Query: 295 SRMKK*TIAFHEAGHAVAGWFLQYCDPLLKVSIIPRGNALGYAQYMPK-DTYLYTQEQML 471 S+ ++ +A+HE GH V G L D + KV+I+PRG A GYA +P+ D Y T+ ++L Sbjct: 413 SKKERNIVAYHEGGHTVIGLVLDEADMVHKVTIVPRGQAGGYAVMLpreDRYFQTKPELL 472 Query: 472 DRMCMTLAGRASEEIFFSKFCSGAQDDLQKVTQSAYTQIVQLGFSEKVGHLSYDLPQSG- 648 D++ L GR +EEI F + +GA +D Q+ T A + + G SEK+G L + Q G Sbjct: 473 DKIVGLLGGRVAEEIIFGEVSTGAHNDFQRATNIARRMVTEFGMSEKLGPLQFGQSQGGQ 532 Query: 649 -----DPNGNKPYSEKTAQLIDEEARIMVKQAYVRAVDLLSTKKDLVEKVALRLLEKEQI 813 D N + YS++ A ID+E + ++K+ Y RA +L+ +D +E +A LL+ E + Sbjct: 533 VFLGRDFNNEQNYSDQIAYEIDQEIQRIIKECYERAKQILTENRDKLELIAQTLLKVETL 592 Query: 814 YKSDLVELLGERPFAEK 864 + L+ E+ Sbjct: 593 DAEQIKHLIDHGTLPER 609
Score = 91.7 bits (226), Expect = 3e-18
Identities = 48/104 (46%), Positives = 68/104 (65%), Gaps = 2/104 (1%)
Frame = +3
Query: 3 RPGRFDRQIYVSLPDIKGRASLFKVHLA--PIKTSINKNEASRKLSARTPGFSGADIANV 176
RPGRFDRQI V PD+ GR ++ KVH P+ ++N + ++ RTPGFSGAD+ N+
Sbjct: 318 RPGRFDRQITVDRPDVIGREAVLKVHARNKPLDETVNL----KSIAMRTPGFSGADLENL 373
Query: 177 CNEAALIGARENADDITFKHFELAIERVIAGLEKKTQVLQSNEK 308
NEAAL+ AR+N I + + A +RVIAG KK++V+ E+
Sbjct: 374 LNEAALVAARQNKKKIDARDIDEATDRVIAGPAKKSRVISKKER 417
>sp|Q39102|FTSH1_ARATH Cell division protein ftsH homolog 1, chloroplast precursor Length = 716 Score = 119 bits (298), Expect = 1e-26 Identities = 68/193 (35%), Positives = 113/193 (58%), Gaps = 12/193 (6%) Frame = +1 Query: 295 SRMKK*TIAFHEAGHAVAGWFLQYCDPLLKVSIIPRGNALGYAQYMPK----DTYLYTQE 462 S KK +A+HEAGHA+ G + DP+ K+SIIPRG A G + P ++ LY++ Sbjct: 514 SEEKKRLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRS 573 Query: 463 QMLDRMCMTLAGRASEEIFF--SKFCSGAQDDLQKVTQSAYTQIVQLGFSEKVGHLSYDL 636 + ++M + L GR +EE+ F +GA +D +V++ A I + GFS+K+G ++ Sbjct: 574 YLENQMAVALGGRVAEEVIFGDENVTTGASNDFMQVSRVARQMIERFGFSKKIGQVAVGG 633 Query: 637 PQSGDP------NGNKPYSEKTAQLIDEEARIMVKQAYVRAVDLLSTKKDLVEKVALRLL 798 P G+P + K YS TA ++D E R +V++AY RA ++++T D++ K+A L+ Sbjct: 634 P-GGNPFMGQQMSSQKDYSMATADIVDAEVRELVEKAYKRATEIITTHIDILHKLAQLLI 692 Query: 799 EKEQIYKSDLVEL 837 EKE + + + L Sbjct: 693 EKETVDGEEFMSL 705
Score = 87.0 bits (214), Expect = 7e-17
Identities = 44/102 (43%), Positives = 64/102 (62%)
Frame = +3
Query: 3 RPGRFDRQIYVSLPDIKGRASLFKVHLAPIKTSINKNEASRKLSARTPGFSGADIANVCN 182
RPGRFDRQ+ V PD+ GR + +VH ++ K+ K++ RTPGF+GAD+ N+ N
Sbjct: 419 RPGRFDRQVTVDRPDVAGRVKILQVHSRG--KALGKDVDFDKVARRTPGFTGADLQNLMN 476
Query: 183 EAALIGARENADDITFKHFELAIERVIAGLEKKTQVLQSNEK 308
EAA++ AR +I+ A+ER+IAG EKK V+ +K
Sbjct: 477 EAAILAARRELKEISKDEISDALERIIAGPEKKNAVVSEEKK 518
>sp|Q9FH02|FTSH2_ARATH Cell division protein ftsH homolog 2, chloroplast precursor Length = 704 Score = 118 bits (296), Expect = 2e-26 Identities = 67/193 (34%), Positives = 114/193 (59%), Gaps = 12/193 (6%) Frame = +1 Query: 295 SRMKK*TIAFHEAGHAVAGWFLQYCDPLLKVSIIPRGNALGYAQYMPK----DTYLYTQE 462 S KK +A+HEAGHA+ G + DP+ K+SIIPRG A G + P ++ LY++ Sbjct: 502 SEEKKRLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRS 561 Query: 463 QMLDRMCMTLAGRASEEIFF--SKFCSGAQDDLQKVTQSAYTQIVQLGFSEKVGHLSYDL 636 + ++M + L GR +EE+ F +GA +D +V++ A + + GFS+K+G ++ Sbjct: 562 YLENQMAVALGGRVAEEVIFGDENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAVG- 620 Query: 637 PQSGDP------NGNKPYSEKTAQLIDEEARIMVKQAYVRAVDLLSTKKDLVEKVALRLL 798 G+P + K YS TA ++D E R +V++AYVRA ++++T+ D++ K+A L+ Sbjct: 621 GAGGNPFLGQSMSSQKDYSMATADVVDAEVRELVEKAYVRAKEIITTQIDILHKLAQLLI 680 Query: 799 EKEQIYKSDLVEL 837 EKE + + + L Sbjct: 681 EKETVDGEEFMSL 693
Score = 90.1 bits (222), Expect = 9e-18
Identities = 46/102 (45%), Positives = 64/102 (62%)
Frame = +3
Query: 3 RPGRFDRQIYVSLPDIKGRASLFKVHLAPIKTSINKNEASRKLSARTPGFSGADIANVCN 182
RPGRFDRQ+ V PD+ GR + KVH +I K+ K++ RTPGF+GAD+ N+ N
Sbjct: 407 RPGRFDRQVTVDRPDVAGRVQILKVHSRG--KAIGKDVDYEKVARRTPGFTGADLQNLMN 464
Query: 183 EAALIGARENADDITFKHFELAIERVIAGLEKKTQVLQSNEK 308
EAA++ AR +I+ A+ER+IAG EKK V+ +K
Sbjct: 465 EAAILAARRELKEISKDEISDALERIIAGPEKKNAVVSEEKK 506
>sp|O83746|FTSH_TREPA Cell division protein ftsH homolog Length = 609 Score = 118 bits (296), Expect = 2e-26 Identities = 67/180 (37%), Positives = 111/180 (61%), Gaps = 5/180 (2%) Frame = +1 Query: 316 IAFHEAGHAVAGWFLQYCDPLLKVSIIPRG-NALGYAQYMPKDT-YLYTQEQMLDRMCMT 489 IA+HE GHA+AG F + D + K++IIPRG +ALGY ++P+D ++ T++Q+L + + Sbjct: 399 IAYHETGHALAGTFTKGADKVHKITIIPRGTSALGYTFHIPEDDRHIVTEQQLLAEVDVL 458 Query: 490 LAGRASEEIFFSKFCSGAQDDLQKVTQSAYTQIVQLGFSEKVGHLSYDLPQSG---DPNG 660 L+GRA+E + F + +GA +D+ + T I G SEK +++ +G +P Sbjct: 459 LSGRAAEFVAFGEVSTGAGNDISRATDIVRKMITDYGMSEKFQNVALTRRGTGYLAEPQL 518 Query: 661 NKPYSEKTAQLIDEEARIMVKQAYVRAVDLLSTKKDLVEKVALRLLEKEQIYKSDLVELL 840 + YSE T Q +DEE ++ + Y V LL+ KK+L+E +A RLLE+E I + + E++ Sbjct: 519 AREYSECTQQYVDEEVARVLAERYRAVVALLTEKKELLEYIATRLLERETIERDEFEEVI 578
Score = 84.0 bits (206), Expect = 6e-16
Identities = 43/103 (41%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Frame = +3
Query: 3 RPGRFDRQIYVSLPDIKGRASLFKVHLAPIKTSINKNEASRKLSAR-TPGFSGADIANVC 179
RPGRFDRQ+ V PD+KGR ++ ++H +K + E K AR T G+SGAD+ANV
Sbjct: 297 RPGRFDRQVCVDRPDLKGREAILRIHAQNVKLA---PEVDLKAVARITGGYSGADLANVV 353
Query: 180 NEAALIGARENADDITFKHFELAIERVIAGLEKKTQVLQSNEK 308
NEAAL+ R + + A+E+ + GL+KK++V++ E+
Sbjct: 354 NEAALLAVRSGRAQVIETDLDEAVEKTMIGLQKKSRVIREEER 396
>sp|P73437|FTSH3_SYNY3 Cell division protein ftsH homolog 3 Length = 628 Score = 118 bits (295), Expect = 3e-26 Identities = 71/192 (36%), Positives = 111/192 (57%), Gaps = 8/192 (4%) Frame = +1 Query: 295 SRMKK*TIAFHEAGHAVAGWFLQYCDPLLKVSIIPRGNA-LGYAQYMP-KDTYLYTQEQM 468 S +K +A+HE GHA+ G + + K+SI+PRG A LGY MP +D +L + ++ Sbjct: 428 SDKEKKIVAYHEVGHALVGAVMPGGGQVAKISIVPRGMAALGYTLQMPTEDRFLLNESEL 487 Query: 469 LDRMCMTLAGRASEEIFFSKFCSGAQDDLQKVTQSAYTQIVQLGFSEKVGHLSYDLPQ-- 642 D++ L GRA+EEI F +GA +DLQ+ T A + G S+ +G L+YD Q Sbjct: 488 RDQIATLLGGRAAEEIVFDSITTGAANDLQRATDLAEQMVTTYGMSKVLGPLAYDKGQQN 547 Query: 643 ----SGDPNGNKPYSEKTAQLIDEEARIMVKQAYVRAVDLLSTKKDLVEKVALRLLEKEQ 810 G N + S+ TA+ ID E + +V+Q + +A+ +L +DL+E +A ++LEKE Sbjct: 548 NFLGQGMGNPRRMVSDDTAKEIDLEVKEIVEQGHNQALAILEHNRDLLEAIAEKILEKEV 607 Query: 811 IYKSDLVELLGE 846 I +L LLG+ Sbjct: 608 IEGEELHHLLGQ 619
Score = 104 bits (259), Expect = 5e-22
Identities = 51/102 (50%), Positives = 70/102 (68%)
Frame = +3
Query: 3 RPGRFDRQIYVSLPDIKGRASLFKVHLAPIKTSINKNEASRKLSARTPGFSGADIANVCN 182
RPGRFDRQ+ V PD+ GR + +++ IK ++K + ++ RTPGF+GAD+AN+ N
Sbjct: 333 RPGRFDRQVLVDRPDLAGRLKILEIYAKKIK--LDKEVELKNIATRTPGFAGADLANLVN 390
Query: 183 EAALIGARENADDITFKHFELAIERVIAGLEKKTQVLQSNEK 308
EAAL+ AR D +T F AIERV+AGLEKK++VL EK
Sbjct: 391 EAALLAARNKQDSVTEADFREAIERVVAGLEKKSRVLSDKEK 432
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,481,773
Number of Sequences: 369166
Number of extensions: 2100644
Number of successful extensions: 6092
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5840
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10670415085
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
