Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_A06
(828 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y4W6|AFG32_HUMAN AFG3-like protein 2 (Paraplegin-like ... 377 e-104
sp|Q920A7|AFG31_MOUSE AFG3-like protein 1 357 2e-98
sp|P39925|AFG3_YEAST Mitochondrial respiratory chain comple... 284 2e-76
sp|P40341|RCA1_YEAST Mitochondrial respiratory chain comple... 275 1e-73
sp|Q9UQ90|SPG7_HUMAN Paraplegin (Spastic paraplegia protein 7) 249 8e-66
sp|P73437|FTSH3_SYNY3 Cell division protein ftsH homolog 3 209 1e-53
sp|P37476|FTSH_BACSU Cell division protein ftsH homolog 206 5e-53
sp|P94304|FTSH_BACPF Cell division protein ftsH homolog 204 2e-52
sp|Q9FH02|FTSH2_ARATH Cell division protein ftsH homolog 2,... 199 8e-51
sp|Q39102|FTSH1_ARATH Cell division protein ftsH homolog 1,... 197 4e-50
>sp|Q9Y4W6|AFG32_HUMAN AFG3-like protein 2 (Paraplegin-like protein)
Length = 797
Score = 377 bits (968), Expect = e-104
Identities = 187/269 (69%), Positives = 223/269 (82%), Gaps = 2/269 (0%)
Frame = +3
Query: 3 RPGRFDRQIYVSLPDIKGRASLFKVHLAPIK--TSINKNEASRKLSARTPGFSGADIANV 176
RPGRFDRQI++ PDIKGRAS+FKVHL P+K +++ K++ +RKL++ TPGFSGAD+ANV
Sbjct: 465 RPGRFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKDKLARKLASLTPGFSGADVANV 524
Query: 177 CNEAALIGARENADDITFKHFELAIERVIAGLEKKTQVLQSNEKRTIAFHEAGHAVAGWF 356
CNEAALI AR +D I KHFE AIERVI GLEKKTQVLQ EK+T+A+HEAGHAVAGW+
Sbjct: 525 CNEAALIAARHLSDSINQKHFEQAIERVIGGLEKKTQVLQPEEKKTVAYHEAGHAVAGWY 584
Query: 357 LQYCDPLLKVSIIPRGNALGYAQYMPKDTYLYTQEQMLDRMCMTLAGRASEEIFFSKFCS 536
L++ DPLLKVSIIPRG LGYAQY+PK+ YLYT+EQ+LDRMCMTL GRASEEIFF + +
Sbjct: 585 LEHADPLLKVSIIPRGKGLGYAQYLPKEQYLYTKEQLLDRMCMTLGGRASEEIFFGRITT 644
Query: 537 GAQDDLQKVTQSAYTQIVQLGFSEKVGHLSYDLPQSGDPNGNKPYSEKTAQLIDEEARIM 716
GAQDDL+KVTQSAY QIVQ G +EKVG +S+DLP+ GD KPYSE TA+LID+E RI+
Sbjct: 645 GAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQGDMVLEKPYSEATARLIDDEVRIL 704
Query: 717 VKQAYVRAVDLLSTKKDLVEKVALRLLEK 803
+ AY R V LL+ KK VEKVAL LLEK
Sbjct: 705 INDAYKRTVALLTEKKADVEKVALLLLEK 733
>sp|Q920A7|AFG31_MOUSE AFG3-like protein 1
Length = 663
Score = 357 bits (916), Expect = 2e-98
Identities = 174/269 (64%), Positives = 216/269 (80%), Gaps = 2/269 (0%)
Frame = +3
Query: 3 RPGRFDRQIYVSLPDIKGRASLFKVHLAPIKT--SINKNEASRKLSARTPGFSGADIANV 176
RPGRFDRQIY+ PDIKGR+S+FKVHL P+K S++K+ SRKL+A TPGF+GADI+NV
Sbjct: 331 RPGRFDRQIYIGPPDIKGRSSIFKVHLRPLKLDGSLSKDALSRKLAALTPGFTGADISNV 390
Query: 177 CNEAALIGARENADDITFKHFELAIERVIAGLEKKTQVLQSNEKRTIAFHEAGHAVAGWF 356
CNEAALI AR + + +HFE AIERVI GLEKKTQVLQ +EK T+A+HEAGHAV GWF
Sbjct: 391 CNEAALIAARHLSPSVQERHFEQAIERVIGGLEKKTQVLQPSEKTTVAYHEAGHAVVGWF 450
Query: 357 LQYCDPLLKVSIIPRGNALGYAQYMPKDTYLYTQEQMLDRMCMTLAGRASEEIFFSKFCS 536
L++ DPLLKVSIIPRG LGYAQY+P++ +LYT+EQ+ DRMCM L GR +E++FF + +
Sbjct: 451 LEHADPLLKVSIIPRGKGLGYAQYLpreQFLYTREQLFDRMCMMLGGRVAEQLFFGQITT 510
Query: 537 GAQDDLQKVTQSAYTQIVQLGFSEKVGHLSYDLPQSGDPNGNKPYSEKTAQLIDEEARIM 716
GAQDDL+KVTQSAY QIVQ G SEK+G +S+D P+ G+ KPYSE TAQLIDEE R +
Sbjct: 511 GAQDDLRKVTQSAYAQIVQFGMSEKLGQVSFDFPRQGETMVEKPYSEATAQLIDEEVRCL 570
Query: 717 VKQAYVRAVDLLSTKKDLVEKVALRLLEK 803
V+ AY R ++LL+ ++ VEKV RLLEK
Sbjct: 571 VRSAYNRTLELLTQCREQVEKVGRRLLEK 599
>sp|P39925|AFG3_YEAST Mitochondrial respiratory chain complexes assembly protein AFG3
(TAT-binding homolog 10)
Length = 761
Score = 284 bits (727), Expect = 2e-76
Identities = 153/279 (54%), Positives = 185/279 (66%), Gaps = 6/279 (2%)
Frame = +3
Query: 3 RPGRFDRQIYVSLPDIKGRASLFKVHLA-----PIKTSINKNEASRKLSARTPGFSGADI 167
RPGRFDR I + PD+ GR ++ VHL P+ T + N S KL+ TPGF+GADI
Sbjct: 447 RPGRFDRHIQIDSPDVNGRQQIYLVHLKRLNLDPLLTD-DMNNLSGKLATLTPGFTGADI 505
Query: 168 ANVCNEAALIGARENADDITFKHFELAIERVIAGLEKKTQVLQSNEKRTIAFHEAGHAVA 347
AN CNEAALI AR N IT HFE AIERVIAGLEKKT+VL EKR++A+HEAGHAV
Sbjct: 506 ANACNEAALIAARHNDPYITIHHFEQAIERVIAGLEKKTRVLSKEEKRSVAYHEAGHAVC 565
Query: 348 GWFLQYCDPLLKVSIIPRG-NALGYAQYMPKDTYLYTQEQMLDRMCMTLAGRASEEIFFS 524
GWFL+Y DPLLKVSIIPRG ALGYAQY+P D YL ++EQ RM M L GR SEE+ F
Sbjct: 566 GWFLKYADPLLKVSIIPRGQGALGYAQYLPPDQYLISEEQFRHRMIMALGGRVSEELHFP 625
Query: 525 KFCSGAQDDLQKVTQSAYTQIVQLGFSEKVGHLSYDLPQSGDPNGNKPYSEKTAQLIDEE 704
SGA DD +KVTQ A + LG S K+G+LS+D G+ NKP+S KTA+ ID E
Sbjct: 626 SVTSGAHDDFKKVTQMANAMVTSLGMSPKIGYLSFD-QNDGNFKVNKPFSNKTARTIDLE 684
Query: 705 ARIMVKQAYVRAVDLLSTKKDLVEKVALRLLEKNRFTNQ 821
+ +V A+ +LL+ D V+ VA LL K T +
Sbjct: 685 VKSIVDDAHRACTELLTKNLDKVDLVAKELLRKEAITRE 723
>sp|P40341|RCA1_YEAST Mitochondrial respiratory chain complexes assembly protein RCA1
(TAT-binding homolog 12)
Length = 825
Score = 275 bits (702), Expect = 1e-73
Identities = 138/274 (50%), Positives = 189/274 (68%), Gaps = 1/274 (0%)
Frame = +3
Query: 3 RPGRFDRQIYVSLPDIKGRASLFKVHLAPIKTSINKNEASRKLSARTPGFSGADIANVCN 182
RPGRFDR I + P+++GR ++F VHL +K + + +L+A TPGFSGADIANVCN
Sbjct: 506 RPGRFDRHINIDKPELEGRKAIFAVHLHHLKLAGEIFDLKNRLAALTPGFSGADIANVCN 565
Query: 183 EAALIGARENADDITFKHFELAIERVIAGLEKKTQVLQSNEKRTIAFHEAGHAVAGWFLQ 362
EAALI AR + D + HFE AIERVI G+E+K+++L EK+ +A+HEAGHAV GW+L+
Sbjct: 566 EAALIAARSDEDAVKLNHFEQAIERVIGGVERKSKLLSPEEKKVVAYHEAGHAVCGWYLK 625
Query: 363 YCDPLLKVSIIPRG-NALGYAQYMPKDTYLYTQEQMLDRMCMTLAGRASEEIFFSKFCSG 539
Y DPLLKVSIIPRG ALGYAQY+P D +L T++Q+ DRM M+L GR SEE+ F SG
Sbjct: 626 YADPLLKVSIIPRGQGALGYAQYLPGDIFLLTEQQLKDRMTMSLGGRVSEELHFPSVTSG 685
Query: 540 AQDDLQKVTQSAYTQIVQLGFSEKVGHLSYDLPQSGDPNGNKPYSEKTAQLIDEEARIMV 719
A DD +KVT A + +LG S+K+G ++Y + D + KP+S++T +ID E +V
Sbjct: 686 ASDDFKKVTSMATAMVTELGMSDKIGWVNYQ--KRDDSDLTKPFSDETGDIIDSEVYRIV 743
Query: 720 KQAYVRAVDLLSTKKDLVEKVALRLLEKNRFTNQ 821
++ + R LL K + VEK+A LL+K T +
Sbjct: 744 QECHDRCTKLLKEKAEDVEKIAQVLLKKEVLTRE 777
>sp|Q9UQ90|SPG7_HUMAN Paraplegin (Spastic paraplegia protein 7)
Length = 795
Score = 249 bits (635), Expect = 8e-66
Identities = 122/269 (45%), Positives = 184/269 (68%), Gaps = 2/269 (0%)
Frame = +3
Query: 3 RPGRFDRQIYVSLPDIKGRASLFKVHLAPIKTSINKNEASRKLSARTPGFSGADIANVCN 182
RPGR DR +++ LP ++ R +F+ HL +K + + S++L+ TPGFSGADIAN+CN
Sbjct: 467 RPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICN 526
Query: 183 EAALIGARENADDITFKHFELAIERVIAGLEKKTQVLQSNEKRTIAFHEAGHAVAGWFLQ 362
EAAL ARE + +FE A+ERV+AG KK+++L E++ +AFHE+GHA+ GW L+
Sbjct: 527 EAALHAAREGHTSVHTLNFEYAVERVLAGTAKKSKILSKEEQKVVAFHESGHALVGWMLE 586
Query: 363 YCDPLLKVSIIPRGN-ALGYAQYMPKDTYLYTQEQMLDRMCMTLAGRASEEIFFSKFCSG 539
+ + ++KVSI PR N ALG+AQ +P+D +L+T+EQ+ +RMCM L GRASE + F++ SG
Sbjct: 587 HTEAVMKVSITPRTNAALGFAQMLPRDQHLFTKEQLFERMCMALGGRASEALSFNEVTSG 646
Query: 540 AQDDLQKVTQSAYTQIVQLGFSEKVGHLSYDLPQSGDPN-GNKPYSEKTAQLIDEEARIM 716
AQDDL+KVT+ AY+ + Q G + +G +S+ Q G G +P+S+ Q++D EAR++
Sbjct: 647 AQDDLRKVTRIAYSMVKQFGMAPGIGPISFPEAQEGLMGIGRRPFSQGLQQMMDHEARLL 706
Query: 717 VKQAYVRAVDLLSTKKDLVEKVALRLLEK 803
V +AY +L D ++ +A LLEK
Sbjct: 707 VAKAYRHTEKVLQDNLDKLQALANALLEK 735
>sp|P73437|FTSH3_SYNY3 Cell division protein ftsH homolog 3
Length = 628
Score = 209 bits (531), Expect = 1e-53
Identities = 114/275 (41%), Positives = 171/275 (62%), Gaps = 8/275 (2%)
Frame = +3
Query: 3 RPGRFDRQIYVSLPDIKGRASLFKVHLAPIKTSINKNEASRKLSARTPGFSGADIANVCN 182
RPGRFDRQ+ V PD+ GR + +++ IK ++K + ++ RTPGF+GAD+AN+ N
Sbjct: 333 RPGRFDRQVLVDRPDLAGRLKILEIYAKKIK--LDKEVELKNIATRTPGFAGADLANLVN 390
Query: 183 EAALIGARENADDITFKHFELAIERVIAGLEKKTQVLQSNEKRTIAFHEAGHAVAGWFLQ 362
EAAL+ AR D +T F AIERV+AGLEKK++VL EK+ +A+HE GHA+ G +
Sbjct: 391 EAALLAARNKQDSVTEADFREAIERVVAGLEKKSRVLSDKEKKIVAYHEVGHALVGAVMP 450
Query: 363 YCDPLLKVSIIPRG-NALGYAQYMP-KDTYLYTQEQMLDRMCMTLAGRASEEIFFSKFCS 536
+ K+SI+PRG ALGY MP +D +L + ++ D++ L GRA+EEI F +
Sbjct: 451 GGGQVAKISIVPRGMAALGYTLQMPTEDRFLLNESELRDQIATLLGGRAAEEIVFDSITT 510
Query: 537 GAQDDLQKVTQSAYTQIVQLGFSEKVGHLSYDLPQ------SGDPNGNKPYSEKTAQLID 698
GA +DLQ+ T A + G S+ +G L+YD Q G N + S+ TA+ ID
Sbjct: 511 GAANDLQRATDLAEQMVTTYGMSKVLGPLAYDKGQQNNFLGQGMGNPRRMVSDDTAKEID 570
Query: 699 EEARIMVKQAYVRAVDLLSTKKDLVEKVALRLLEK 803
E + +V+Q + +A+ +L +DL+E +A ++LEK
Sbjct: 571 LEVKEIVEQGHNQALAILEHNRDLLEAIAEKILEK 605
>sp|P37476|FTSH_BACSU Cell division protein ftsH homolog
Length = 637
Score = 206 bits (525), Expect = 5e-53
Identities = 112/275 (40%), Positives = 167/275 (60%), Gaps = 9/275 (3%)
Frame = +3
Query: 3 RPGRFDRQIYVSLPDIKGRASLFKVHLA--PIKTSINKNEASRKLSARTPGFSGADIANV 176
RPGRFDRQI V PD+ GR ++ KVH P+ ++N + ++ RTPGFSGAD+ N+
Sbjct: 318 RPGRFDRQITVDRPDVIGREAVLKVHARNKPLDETVNL----KSIAMRTPGFSGADLENL 373
Query: 177 CNEAALIGARENADDITFKHFELAIERVIAGLEKKTQVLQSNEKRTIAFHEAGHAVAGWF 356
NEAAL+ AR+N I + + A +RVIAG KK++V+ E+ +A+HE GH V G
Sbjct: 374 LNEAALVAARQNKKKIDARDIDEATDRVIAGPAKKSRVISKKERNIVAYHEGGHTVIGLV 433
Query: 357 LQYCDPLLKVSIIPRGNALGYAQYMPK-DTYLYTQEQMLDRMCMTLAGRASEEIFFSKFC 533
L D + KV+I+PRG A GYA +P+ D Y T+ ++LD++ L GR +EEI F +
Sbjct: 434 LDEADMVHKVTIVPRGQAGGYAVMLpreDRYFQTKPELLDKIVGLLGGRVAEEIIFGEVS 493
Query: 534 SGAQDDLQKVTQSAYTQIVQLGFSEKVGHLSYDLPQSG------DPNGNKPYSEKTAQLI 695
+GA +D Q+ T A + + G SEK+G L + Q G D N + YS++ A I
Sbjct: 494 TGAHNDFQRATNIARRMVTEFGMSEKLGPLQFGQSQGGQVFLGRDFNNEQNYSDQIAYEI 553
Query: 696 DEEARIMVKQAYVRAVDLLSTKKDLVEKVALRLLE 800
D+E + ++K+ Y RA +L+ +D +E +A LL+
Sbjct: 554 DQEIQRIIKECYERAKQILTENRDKLELIAQTLLK 588
>sp|P94304|FTSH_BACPF Cell division protein ftsH homolog
Length = 679
Score = 204 bits (519), Expect = 2e-52
Identities = 113/273 (41%), Positives = 163/273 (59%), Gaps = 7/273 (2%)
Frame = +3
Query: 3 RPGRFDRQIYVSLPDIKGRASLFKVHLAPIKTSINKNEASRKLSARTPGFSGADIANVCN 182
RPGRFDRQI V+ PD+ GR + KVH +N + + ++ RTPGFSGAD+ N+ N
Sbjct: 323 RPGRFDRQIQVNRPDVNGREEVLKVHAR--NKPLNDDVNLKTIATRTPGFSGADLENLLN 380
Query: 183 EAALIGARENADDITFKHFELAIERVIAGLEKKTQVLQSNEKRTIAFHEAGHAVAGWFLQ 362
EAAL+ AR + I+ H E AI+RVIAG KK++V+ EK+ +A+HEAGH V G L+
Sbjct: 381 EAALVAARHDHTKISMIHIEEAIDRVIAGPAKKSRVISPKEKKIVAWHEAGHTVVGVKLE 440
Query: 363 YCDPLLKVSIIPRGNALGYAQYMPK-DTYLYTQEQMLDRMCMTLAGRASEEIFFSKFCSG 539
D + KV+I+PRG A GYA +PK D Y TQ ++LD++ L GR +EE+ F + +G
Sbjct: 441 NADMVHKVTIVPRGMAGGYAVMLPKEDRYFMTQPELLDKIIGLLGGRVAEEVTFGEVSTG 500
Query: 540 AQDDLQKVTQSAYTQIVQLGFSEKVGHLSYDLPQSG------DPNGNKPYSEKTAQLIDE 701
A +D Q+ T A + + G SEK+G + + G D + YS+ A ID
Sbjct: 501 AHNDFQRATGIARKMVTEYGMSEKLGPMQFISGSGGQVFLGRDIQNEQNYSDAIAHEIDL 560
Query: 702 EARIMVKQAYVRAVDLLSTKKDLVEKVALRLLE 800
E + ++K+ Y R +L KD ++ VA LL+
Sbjct: 561 EVQRIIKECYARCKQILLENKDSLDLVAKTLLD 593
>sp|Q9FH02|FTSH2_ARATH Cell division protein ftsH homolog 2, chloroplast precursor
Length = 704
Score = 199 bits (506), Expect = 8e-51
Identities = 109/279 (39%), Positives = 171/279 (61%), Gaps = 12/279 (4%)
Frame = +3
Query: 3 RPGRFDRQIYVSLPDIKGRASLFKVHLAPIKTSINKNEASRKLSARTPGFSGADIANVCN 182
RPGRFDRQ+ V PD+ GR + KVH +I K+ K++ RTPGF+GAD+ N+ N
Sbjct: 407 RPGRFDRQVTVDRPDVAGRVQILKVHSRG--KAIGKDVDYEKVARRTPGFTGADLQNLMN 464
Query: 183 EAALIGARENADDITFKHFELAIERVIAGLEKKTQVLQSNEKRTIAFHEAGHAVAGWFLQ 362
EAA++ AR +I+ A+ER+IAG EKK V+ +KR +A+HEAGHA+ G +
Sbjct: 465 EAAILAARRELKEISKDEISDALERIIAGPEKKNAVVSEEKKRLVAYHEAGHALVGALMP 524
Query: 363 YCDPLLKVSIIPRGNALGYAQYMPK----DTYLYTQEQMLDRMCMTLAGRASEEIFF--S 524
DP+ K+SIIPRG A G + P ++ LY++ + ++M + L GR +EE+ F
Sbjct: 525 EYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDE 584
Query: 525 KFCSGAQDDLQKVTQSAYTQIVQLGFSEKVGHLSYDLPQSGDP------NGNKPYSEKTA 686
+GA +D +V++ A + + GFS+K+G ++ G+P + K YS TA
Sbjct: 585 NVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAVG-GAGGNPFLGQSMSSQKDYSMATA 643
Query: 687 QLIDEEARIMVKQAYVRAVDLLSTKKDLVEKVALRLLEK 803
++D E R +V++AYVRA ++++T+ D++ K+A L+EK
Sbjct: 644 DVVDAEVRELVEKAYVRAKEIITTQIDILHKLAQLLIEK 682
>sp|Q39102|FTSH1_ARATH Cell division protein ftsH homolog 1, chloroplast precursor
Length = 716
Score = 197 bits (500), Expect = 4e-50
Identities = 108/279 (38%), Positives = 170/279 (60%), Gaps = 12/279 (4%)
Frame = +3
Query: 3 RPGRFDRQIYVSLPDIKGRASLFKVHLAPIKTSINKNEASRKLSARTPGFSGADIANVCN 182
RPGRFDRQ+ V PD+ GR + +VH ++ K+ K++ RTPGF+GAD+ N+ N
Sbjct: 419 RPGRFDRQVTVDRPDVAGRVKILQVHSRG--KALGKDVDFDKVARRTPGFTGADLQNLMN 476
Query: 183 EAALIGARENADDITFKHFELAIERVIAGLEKKTQVLQSNEKRTIAFHEAGHAVAGWFLQ 362
EAA++ AR +I+ A+ER+IAG EKK V+ +KR +A+HEAGHA+ G +
Sbjct: 477 EAAILAARRELKEISKDEISDALERIIAGPEKKNAVVSEEKKRLVAYHEAGHALVGALMP 536
Query: 363 YCDPLLKVSIIPRGNALGYAQYMPK----DTYLYTQEQMLDRMCMTLAGRASEEIFF--S 524
DP+ K+SIIPRG A G + P ++ LY++ + ++M + L GR +EE+ F
Sbjct: 537 EYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGDE 596
Query: 525 KFCSGAQDDLQKVTQSAYTQIVQLGFSEKVGHLSYDLPQSGDP------NGNKPYSEKTA 686
+GA +D +V++ A I + GFS+K+G ++ P G+P + K YS TA
Sbjct: 597 NVTTGASNDFMQVSRVARQMIERFGFSKKIGQVAVGGP-GGNPFMGQQMSSQKDYSMATA 655
Query: 687 QLIDEEARIMVKQAYVRAVDLLSTKKDLVEKVALRLLEK 803
++D E R +V++AY RA ++++T D++ K+A L+EK
Sbjct: 656 DIVDAEVRELVEKAYKRATEIITTHIDILHKLAQLLIEK 694
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,068,681
Number of Sequences: 369166
Number of extensions: 1707984
Number of successful extensions: 4696
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4431
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8004331590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)