Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_L03
(741 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y4W6|AFG32_HUMAN AFG3-like protein 2 (Paraplegin-like ... 320 3e-87
sp|Q920A7|AFG31_MOUSE AFG3-like protein 1 302 5e-82
sp|P39925|AFG3_YEAST Mitochondrial respiratory chain comple... 197 2e-50
sp|P40341|RCA1_YEAST Mitochondrial respiratory chain comple... 193 5e-49
sp|Q9UQ90|SPG7_HUMAN Paraplegin (Spastic paraplegia protein 7) 168 2e-41
sp|P37476|FTSH_BACSU Cell division protein ftsH homolog 127 2e-29
sp|P73437|FTSH3_SYNY3 Cell division protein ftsH homolog 3 121 2e-27
sp|Q39102|FTSH1_ARATH Cell division protein ftsH homolog 1,... 120 3e-27
sp|O83746|FTSH_TREPA Cell division protein ftsH homolog 120 4e-27
sp|Q9FH02|FTSH2_ARATH Cell division protein ftsH homolog 2,... 120 5e-27
>sp|Q9Y4W6|AFG32_HUMAN AFG3-like protein 2 (Paraplegin-like protein)
Length = 797
Score = 320 bits (819), Expect = 3e-87
Identities = 157/228 (68%), Positives = 185/228 (81%)
Frame = +3
Query: 12 KKLKYFSRMKK*TIAFHEAGHAVAGWFLQYCDPLLKVSIIPRGNALGYAQYMPKDTYLYT 191
KK + +K T+A+HEAGHAVAGW+L++ DPLLKVSIIPRG LGYAQY+PK+ YLYT
Sbjct: 558 KKTQVLQPEEKKTVAYHEAGHAVAGWYLEHADPLLKVSIIPRGKGLGYAQYLPKEQYLYT 617
Query: 192 QEQMLDRMCMTLAGRASEEIFFSKFCSGAQDDLQKVTQSAYTQIVQLGFSEKVGHLSYDL 371
+EQ+LDRMCMTL GRASEEIFF + +GAQDDL+KVTQSAY QIVQ G +EKVG +S+DL
Sbjct: 618 KEQLLDRMCMTLGGRASEEIFFGRITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDL 677
Query: 372 PQSGDPNGNKPYSEKTAQLIDEEARIMVKQAYVRAVDLLSTKKDLVEKVALRLLEKEQIY 551
P+ GD KPYSE TA+LID+E RI++ AY R V LL+ KK VEKVAL LLEKE +
Sbjct: 678 PRQGDMVLEKPYSEATARLIDDEVRILINDAYKRTVALLTEKKADVEKVALLLLEKEVLD 737
Query: 552 KSDLVELLGERPFAEKTTYEEFVEGTGSFEEDQELPEGLKDWNKENPK 695
K+D+VELLG RPFAEK+TYEEFVEGTGS +ED LPEGLKDWNKE K
Sbjct: 738 KNDMVELLGPRPFAEKSTYEEFVEGTGSLDEDTSLPEGLKDWNKEREK 785
>sp|Q920A7|AFG31_MOUSE AFG3-like protein 1
Length = 663
Score = 302 bits (774), Expect = 5e-82
Identities = 143/224 (63%), Positives = 178/224 (79%)
Frame = +3
Query: 12 KKLKYFSRMKK*TIAFHEAGHAVAGWFLQYCDPLLKVSIIPRGNALGYAQYMPKDTYLYT 191
KK + +K T+A+HEAGHAV GWFL++ DPLLKVSIIPRG LGYAQY+P++ +LYT
Sbjct: 424 KKTQVLQPSEKTTVAYHEAGHAVVGWFLEHADPLLKVSIIPRGKGLGYAQYLpreQFLYT 483
Query: 192 QEQMLDRMCMTLAGRASEEIFFSKFCSGAQDDLQKVTQSAYTQIVQLGFSEKVGHLSYDL 371
+EQ+ DRMCM L GR +E++FF + +GAQDDL+KVTQSAY QIVQ G SEK+G +S+D
Sbjct: 484 REQLFDRMCMMLGGRVAEQLFFGQITTGAQDDLRKVTQSAYAQIVQFGMSEKLGQVSFDF 543
Query: 372 PQSGDPNGNKPYSEKTAQLIDEEARIMVKQAYVRAVDLLSTKKDLVEKVALRLLEKEQIY 551
P+ G+ KPYSE TAQLIDEE R +V+ AY R ++LL+ ++ VEKV RLLEKE +
Sbjct: 544 PRQGETMVEKPYSEATAQLIDEEVRCLVRSAYNRTLELLTQCREQVEKVGRRLLEKEVLE 603
Query: 552 KSDLVELLGERPFAEKTTYEEFVEGTGSFEEDQELPEGLKDWNK 683
K+D++ELLG RPFAEK+TYEEFVEGTGS EED LPEGLKDWNK
Sbjct: 604 KADMIELLGPRPFAEKSTYEEFVEGTGSLEEDTSLPEGLKDWNK 647
>sp|P39925|AFG3_YEAST Mitochondrial respiratory chain complexes assembly protein AFG3
(TAT-binding homolog 10)
Length = 761
Score = 197 bits (501), Expect = 2e-50
Identities = 104/212 (49%), Positives = 139/212 (65%), Gaps = 2/212 (0%)
Frame = +3
Query: 12 KKLKYFSRMKK*TIAFHEAGHAVAGWFLQYCDPLLKVSIIPRGN-ALGYAQYMPKDTYLY 188
KK + S+ +K ++A+HEAGHAV GWFL+Y DPLLKVSIIPRG ALGYAQY+P D YL
Sbjct: 542 KKTRVLSKEEKRSVAYHEAGHAVCGWFLKYADPLLKVSIIPRGQGALGYAQYLPPDQYLI 601
Query: 189 TQEQMLDRMCMTLAGRASEEIFFSKFCSGAQDDLQKVTQSAYTQIVQLGFSEKVGHLSYD 368
++EQ RM M L GR SEE+ F SGA DD +KVTQ A + LG S K+G+LS+D
Sbjct: 602 SEEQFRHRMIMALGGRVSEELHFPSVTSGAHDDFKKVTQMANAMVTSLGMSPKIGYLSFD 661
Query: 369 LPQSGDPNGNKPYSEKTAQLIDEEARIMVKQAYVRAVDLLSTKKDLVEKVALRLLEKEQI 548
G+ NKP+S KTA+ ID E + +V A+ +LL+ D V+ VA LL KE I
Sbjct: 662 -QNDGNFKVNKPFSNKTARTIDLEVKSIVDDAHRACTELLTKNLDKVDLVAKELLRKEAI 720
Query: 549 YKSDLVELLGERPFAEKT-TYEEFVEGTGSFE 641
+ D++ LLG RPF E+ +E++++ + E
Sbjct: 721 TREDMIRLLGPRPFKERNEAFEKYLDPKSNTE 752
>sp|P40341|RCA1_YEAST Mitochondrial respiratory chain complexes assembly protein RCA1
(TAT-binding homolog 12)
Length = 825
Score = 193 bits (490), Expect = 5e-49
Identities = 101/229 (44%), Positives = 148/229 (64%), Gaps = 1/229 (0%)
Frame = +3
Query: 12 KKLKYFSRMKK*TIAFHEAGHAVAGWFLQYCDPLLKVSIIPRGN-ALGYAQYMPKDTYLY 188
+K K S +K +A+HEAGHAV GW+L+Y DPLLKVSIIPRG ALGYAQY+P D +L
Sbjct: 597 RKSKLLSPEEKKVVAYHEAGHAVCGWYLKYADPLLKVSIIPRGQGALGYAQYLPGDIFLL 656
Query: 189 TQEQMLDRMCMTLAGRASEEIFFSKFCSGAQDDLQKVTQSAYTQIVQLGFSEKVGHLSYD 368
T++Q+ DRM M+L GR SEE+ F SGA DD +KVT A + +LG S+K+G ++Y
Sbjct: 657 TEQQLKDRMTMSLGGRVSEELHFPSVTSGASDDFKKVTSMATAMVTELGMSDKIGWVNYQ 716
Query: 369 LPQSGDPNGNKPYSEKTAQLIDEEARIMVKQAYVRAVDLLSTKKDLVEKVALRLLEKEQI 548
+ D + KP+S++T +ID E +V++ + R LL K + VEK+A LL+KE +
Sbjct: 717 --KRDDSDLTKPFSDETGDIIDSEVYRIVQECHDRCTKLLKEKAEDVEKIAQVLLKKEVL 774
Query: 549 YKSDLVELLGERPFAEKTTYEEFVEGTGSFEEDQELPEGLKDWNKENPK 695
+ D+++LLG+RPF E+ + F + +E ++ E K+ + PK
Sbjct: 775 TREDMIDLLGKRPFPERN--DAFDKYLNDYETEKIRKEEEKNEKRNEPK 821
>sp|Q9UQ90|SPG7_HUMAN Paraplegin (Spastic paraplegia protein 7)
Length = 795
Score = 168 bits (425), Expect = 2e-41
Identities = 86/198 (43%), Positives = 130/198 (65%), Gaps = 2/198 (1%)
Frame = +3
Query: 12 KKLKYFSRMKK*TIAFHEAGHAVAGWFLQYCDPLLKVSIIPRGNA-LGYAQYMPKDTYLY 188
KK K S+ ++ +AFHE+GHA+ GW L++ + ++KVSI PR NA LG+AQ +P+D +L+
Sbjct: 558 KKSKILSKEEQKVVAFHESGHALVGWMLEHTEAVMKVSITPRTNAALGFAQMLPRDQHLF 617
Query: 189 TQEQMLDRMCMTLAGRASEEIFFSKFCSGAQDDLQKVTQSAYTQIVQLGFSEKVGHLSYD 368
T+EQ+ +RMCM L GRASE + F++ SGAQDDL+KVT+ AY+ + Q G + +G +S+
Sbjct: 618 TKEQLFERMCMALGGRASEALSFNEVTSGAQDDLRKVTRIAYSMVKQFGMAPGIGPISFP 677
Query: 369 LPQSGDPN-GNKPYSEKTAQLIDEEARIMVKQAYVRAVDLLSTKKDLVEKVALRLLEKEQ 545
Q G G +P+S+ Q++D EAR++V +AY +L D ++ +A LLEKE
Sbjct: 678 EAQEGLMGIGRRPFSQGLQQMMDHEARLLVAKAYRHTEKVLQDNLDKLQALANALLEKEV 737
Query: 546 IYKSDLVELLGERPFAEK 599
I D+ L+G P K
Sbjct: 738 INYEDIEALIGPPPHGPK 755
>sp|P37476|FTSH_BACSU Cell division protein ftsH homolog
Length = 637
Score = 127 bits (320), Expect = 2e-29
Identities = 70/203 (34%), Positives = 113/203 (55%), Gaps = 7/203 (3%)
Frame = +3
Query: 12 KKLKYFSRMKK*TIAFHEAGHAVAGWFLQYCDPLLKVSIIPRGNALGYAQYMPK-DTYLY 188
KK + S+ ++ +A+HE GH V G L D + KV+I+PRG A GYA +P+ D Y
Sbjct: 407 KKSRVISKKERNIVAYHEGGHTVIGLVLDEADMVHKVTIVPRGQAGGYAVMLpreDRYFQ 466
Query: 189 TQEQMLDRMCMTLAGRASEEIFFSKFCSGAQDDLQKVTQSAYTQIVQLGFSEKVGHLSYD 368
T+ ++LD++ L GR +EEI F + +GA +D Q+ T A + + G SEK+G L +
Sbjct: 467 TKPELLDKIVGLLGGRVAEEIIFGEVSTGAHNDFQRATNIARRMVTEFGMSEKLGPLQFG 526
Query: 369 LPQSG------DPNGNKPYSEKTAQLIDEEARIMVKQAYVRAVDLLSTKKDLVEKVALRL 530
Q G D N + YS++ A ID+E + ++K+ Y RA +L+ +D +E +A L
Sbjct: 527 QSQGGQVFLGRDFNNEQNYSDQIAYEIDQEIQRIIKECYERAKQILTENRDKLELIAQTL 586
Query: 531 LEKEQIYKSDLVELLGERPFAEK 599
L+ E + + L+ E+
Sbjct: 587 LKVETLDAEQIKHLIDHGTLPER 609
>sp|P73437|FTSH3_SYNY3 Cell division protein ftsH homolog 3
Length = 628
Score = 121 bits (304), Expect = 2e-27
Identities = 73/198 (36%), Positives = 114/198 (57%), Gaps = 8/198 (4%)
Frame = +3
Query: 12 KKLKYFSRMKK*TIAFHEAGHAVAGWFLQYCDPLLKVSIIPRGNA-LGYAQYMP-KDTYL 185
KK + S +K +A+HE GHA+ G + + K+SI+PRG A LGY MP +D +L
Sbjct: 422 KKSRVLSDKEKKIVAYHEVGHALVGAVMPGGGQVAKISIVPRGMAALGYTLQMPTEDRFL 481
Query: 186 YTQEQMLDRMCMTLAGRASEEIFFSKFCSGAQDDLQKVTQSAYTQIVQLGFSEKVGHLSY 365
+ ++ D++ L GRA+EEI F +GA +DLQ+ T A + G S+ +G L+Y
Sbjct: 482 LNESELRDQIATLLGGRAAEEIVFDSITTGAANDLQRATDLAEQMVTTYGMSKVLGPLAY 541
Query: 366 DLPQ------SGDPNGNKPYSEKTAQLIDEEARIMVKQAYVRAVDLLSTKKDLVEKVALR 527
D Q G N + S+ TA+ ID E + +V+Q + +A+ +L +DL+E +A +
Sbjct: 542 DKGQQNNFLGQGMGNPRRMVSDDTAKEIDLEVKEIVEQGHNQALAILEHNRDLLEAIAEK 601
Query: 528 LLEKEQIYKSDLVELLGE 581
+LEKE I +L LLG+
Sbjct: 602 ILEKEVIEGEELHHLLGQ 619
>sp|Q39102|FTSH1_ARATH Cell division protein ftsH homolog 1, chloroplast precursor
Length = 716
Score = 120 bits (302), Expect = 3e-27
Identities = 70/199 (35%), Positives = 115/199 (57%), Gaps = 12/199 (6%)
Frame = +3
Query: 12 KKLKYFSRMKK*TIAFHEAGHAVAGWFLQYCDPLLKVSIIPRGNALGYAQYMPK----DT 179
KK S KK +A+HEAGHA+ G + DP+ K+SIIPRG A G + P ++
Sbjct: 508 KKNAVVSEEKKRLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLES 567
Query: 180 YLYTQEQMLDRMCMTLAGRASEEIFF--SKFCSGAQDDLQKVTQSAYTQIVQLGFSEKVG 353
LY++ + ++M + L GR +EE+ F +GA +D +V++ A I + GFS+K+G
Sbjct: 568 GLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGASNDFMQVSRVARQMIERFGFSKKIG 627
Query: 354 HLSYDLPQSGDP------NGNKPYSEKTAQLIDEEARIMVKQAYVRAVDLLSTKKDLVEK 515
++ P G+P + K YS TA ++D E R +V++AY RA ++++T D++ K
Sbjct: 628 QVAVGGP-GGNPFMGQQMSSQKDYSMATADIVDAEVRELVEKAYKRATEIITTHIDILHK 686
Query: 516 VALRLLEKEQIYKSDLVEL 572
+A L+EKE + + + L
Sbjct: 687 LAQLLIEKETVDGEEFMSL 705
>sp|O83746|FTSH_TREPA Cell division protein ftsH homolog
Length = 609
Score = 120 bits (301), Expect = 4e-27
Identities = 69/194 (35%), Positives = 117/194 (60%), Gaps = 5/194 (2%)
Frame = +3
Query: 9 RKKLKYFSRMKK*TIAFHEAGHAVAGWFLQYCDPLLKVSIIPRG-NALGYAQYMPKDT-Y 182
+KK + ++ IA+HE GHA+AG F + D + K++IIPRG +ALGY ++P+D +
Sbjct: 385 QKKSRVIREEERRIIAYHETGHALAGTFTKGADKVHKITIIPRGTSALGYTFHIPEDDRH 444
Query: 183 LYTQEQMLDRMCMTLAGRASEEIFFSKFCSGAQDDLQKVTQSAYTQIVQLGFSEKVGHLS 362
+ T++Q+L + + L+GRA+E + F + +GA +D+ + T I G SEK +++
Sbjct: 445 IVTEQQLLAEVDVLLSGRAAEFVAFGEVSTGAGNDISRATDIVRKMITDYGMSEKFQNVA 504
Query: 363 YDLPQSG---DPNGNKPYSEKTAQLIDEEARIMVKQAYVRAVDLLSTKKDLVEKVALRLL 533
+G +P + YSE T Q +DEE ++ + Y V LL+ KK+L+E +A RLL
Sbjct: 505 LTRRGTGYLAEPQLAREYSECTQQYVDEEVARVLAERYRAVVALLTEKKELLEYIATRLL 564
Query: 534 EKEQIYKSDLVELL 575
E+E I + + E++
Sbjct: 565 ERETIERDEFEEVI 578
>sp|Q9FH02|FTSH2_ARATH Cell division protein ftsH homolog 2, chloroplast precursor
Length = 704
Score = 120 bits (300), Expect = 5e-27
Identities = 69/199 (34%), Positives = 116/199 (58%), Gaps = 12/199 (6%)
Frame = +3
Query: 12 KKLKYFSRMKK*TIAFHEAGHAVAGWFLQYCDPLLKVSIIPRGNALGYAQYMPK----DT 179
KK S KK +A+HEAGHA+ G + DP+ K+SIIPRG A G + P ++
Sbjct: 496 KKNAVVSEEKKRLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLES 555
Query: 180 YLYTQEQMLDRMCMTLAGRASEEIFF--SKFCSGAQDDLQKVTQSAYTQIVQLGFSEKVG 353
LY++ + ++M + L GR +EE+ F +GA +D +V++ A + + GFS+K+G
Sbjct: 556 GLYSRSYLENQMAVALGGRVAEEVIFGDENVTTGASNDFMQVSRVARQMVERFGFSKKIG 615
Query: 354 HLSYDLPQSGDP------NGNKPYSEKTAQLIDEEARIMVKQAYVRAVDLLSTKKDLVEK 515
++ G+P + K YS TA ++D E R +V++AYVRA ++++T+ D++ K
Sbjct: 616 QVAVG-GAGGNPFLGQSMSSQKDYSMATADVVDAEVRELVEKAYVRAKEIITTQIDILHK 674
Query: 516 VALRLLEKEQIYKSDLVEL 572
+A L+EKE + + + L
Sbjct: 675 LAQLLIEKETVDGEEFMSL 693
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,502,962
Number of Sequences: 369166
Number of extensions: 1638609
Number of successful extensions: 4567
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4494
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6679696800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)