DrC_00482
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00482 (779 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P61228|YKKB_CAEEL Hypothetical protein C02F5.13 in chrom... 47 6e-05 sp|Q8M355|RMAR_SACCA Mitochondrial ribosomal protein VAR1 37 0.079 sp|P81295|PRR3_JUNAS Pathogenesis-related protein precursor... 34 0.39 sp|P36583|PCK2_SCHPO Protein kinase C-like 2 34 0.51 sp|Q01221|VB17_VACCV Protein B17 33 0.87 sp|P62283|ASPM_AOTVO Abnormal spindle-like microcephaly-ass... 33 0.87 sp|P33878|VB17_VARV Protein B17 33 1.1 sp|P21075|VB17_VACCC Protein B17 33 1.1 sp|P62296|ASPM_SAIBB Abnormal spindle-like microcephaly-ass... 33 1.1 sp|P21421|RPOB_PLAFA DNA-directed RNA polymerase beta chain 31 4.3
>sp|P61228|YKKB_CAEEL Hypothetical protein C02F5.13 in chromosome III Length = 210 Score = 47.0 bits (110), Expect = 6e-05 Identities = 34/108 (31%), Positives = 41/108 (37%), Gaps = 4/108 (3%) Frame = +1 Query: 385 KSKCLK--SYSVKSFYLTN--CSVHNDVLCLGNRQFHKMLPCNWTEGKSWLTAXXXXXXX 552 + KCLK Y + TN C V + C G R F K PC G +LT Sbjct: 97 EGKCLKMGGYRAEDVEFTNVKCRVLPCIECHGPRTFTKSTPCIIYNGHYFLTTLLYSIFL 156 Query: 553 XXXXADRFYLGMWQMXXXXXXXXXXXXVWTFVDWILIAFGYLKPSDGS 696 DRF LG M +W VD L+ G L P+D S Sbjct: 157 GVVAVDRFCLGYSAMAVGKLMTLGGFGIWWIVDIFLLVLGVLGPADDS 204
>sp|Q8M355|RMAR_SACCA Mitochondrial ribosomal protein VAR1 Length = 326 Score = 36.6 bits (83), Expect = 0.079 Identities = 25/116 (21%), Positives = 56/116 (48%) Frame = -2 Query: 715 NKFKHKLIHQMALNNQKQSISSLQTSTRLIHQT*IISLSPFATFLSKIYRLQIRRKINLN 536 NK +KL++ + +NN ++++ + II + P ++ ++ IN N Sbjct: 79 NKLLYKLMNMIMINNMTMNVNNKNNNN-------IIMMKPMYQYMMNKLNIKFYYYIN-N 130 Query: 535 QTQLTNFYLQSSYREAFYEIDDCPNIKRHYEQNNLLSKMISRNNFLDILTF*YKYN 368 TN+Y+ Y+ +++ N+ + NN++S I++N ++++ Y YN Sbjct: 131 NNMNTNYYMNMLYK-LMNTLNNNNNMYMN-NMNNIMSMYINKNINIEMIKLNYVYN 184
>sp|P81295|PRR3_JUNAS Pathogenesis-related protein precursor (Pollen allergen Jun a 3) Length = 225 Score = 34.3 bits (77), Expect = 0.39 Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 8/94 (8%) Frame = +1 Query: 154 FSKSFQNICDFSNKDCQSVPVDCLNCTLVKTCTYGRR--YNATC--QLKINAVCNKKSEI 321 +++S Q+ D S D ++P+ +N T + + NA C +LK++ CN + Sbjct: 110 YTQSDQDYYDVSLVDGFNIPL-AINPTNAQCTAPACKADINAVCPSELKVDGGCNSACNV 168 Query: 322 YRS--YICHYCY--QVPQINYTCIKKSKCLKSYS 411 +++ Y C Y P NY+ I K++C ++YS Sbjct: 169 FKTDQYCCRNAYVDNCPATNYSKIFKNQCPQAYS 202
>sp|P36583|PCK2_SCHPO Protein kinase C-like 2 Length = 1016 Score = 33.9 bits (76), Expect = 0.51 Identities = 26/103 (25%), Positives = 47/103 (45%) Frame = -2 Query: 778 QNTKIYKVNFYKIKNSCFRYYNKFKHKLIHQMALNNQKQSISSLQTSTRLIHQT*IISLS 599 + TKIYK +K K+S ++++ K K N K S+S T+T I + S Sbjct: 538 RTTKIYKAQQHKQKSSHHKHHHHKKSKSSSSKHKENDKASVSITTTTTPSITPADPVPTS 597 Query: 598 PFATFLSKIYRLQIRRKINLNQTQLTNFYLQSSYREAFYEIDD 470 P + + R + NL T +++ L ++ + ++DD Sbjct: 598 PKPLAIEPVKRKPVHAG-NLEVTSVSDNKLGATVQVVEQKVDD 639
>sp|Q01221|VB17_VACCV Protein B17 Length = 340 Score = 33.1 bits (74), Expect = 0.87 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Frame = +1 Query: 331 YICHYCYQVPQINYTCIKKSKCLKSYSVKSFYLTNCSVHNDVLCLGNRQF---HKMLPCN 501 Y+C Y +N+ CI +C + +TNC ++N++ + +F ++ CN Sbjct: 41 YMCRYT----TLNHNCINVRRCALDSKLLHDIITNCKIYNNIELVRATKFVYYLDLIKCN 96 Query: 502 W 504 W Sbjct: 97 W 97
>sp|P62283|ASPM_AOTVO Abnormal spindle-like microcephaly-associated protein homolog Length = 3473 Score = 33.1 bits (74), Expect = 0.87 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 13/97 (13%) Frame = -2 Query: 745 KIKNSCFRYYNKFKHKLIHQMALNNQKQSISSLQTS-----------TRLIHQT*IISLS 599 K +N F+ YNK +H +IH A+ ++ L+T L+ + +SL Sbjct: 2223 KERNIQFQRYNKLRHSVIHIQAIFRGMKARRHLKTMHIAATLIQRRFRTLMMRRRFLSLK 2282 Query: 598 PFATFLSKIYRLQIRRKINLNQTQLTN--FYLQSSYR 494 A ++ + YR + K +L +L N +QSSYR Sbjct: 2283 KTAIWVQRKYRAHLCTKHHLQFLRLQNAAIKIQSSYR 2319
>sp|P33878|VB17_VARV Protein B17 Length = 340 Score = 32.7 bits (73), Expect = 1.1 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Frame = +1 Query: 331 YICHYCYQVPQINYTCIKKSKCLKSYSVKSFYLTNCSVHNDVLCLGNRQF---HKMLPCN 501 Y+C Y +N+ C+ +C + +TNC ++N++ + +F ++ CN Sbjct: 41 YMCRYTI----LNHNCVNVRRCALDSKLLHDIITNCKIYNNIELVRATKFVYYLDLIKCN 96 Query: 502 W 504 W Sbjct: 97 W 97
>sp|P21075|VB17_VACCC Protein B17 Length = 340 Score = 32.7 bits (73), Expect = 1.1 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Frame = +1 Query: 331 YICHYCYQVPQINYTCIKKSKCLKSYSVKSFYLTNCSVHNDVLCLGNRQF---HKMLPCN 501 Y+C Y +N+ C+ +C + +TNC ++N++ + +F ++ CN Sbjct: 41 YMCRYT----TLNHNCVNVRRCALDSKLLHDIITNCKIYNNIELVRATKFVYYLDLIKCN 96 Query: 502 W 504 W Sbjct: 97 W 97
>sp|P62296|ASPM_SAIBB Abnormal spindle-like microcephaly-associated protein homolog Length = 3469 Score = 32.7 bits (73), Expect = 1.1 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 13/97 (13%) Frame = -2 Query: 745 KIKNSCFRYYNKFKHKLIHQMAL---NNQKQSISSLQTSTRLIH--------QT*IISLS 599 K +N F+ YNK +H +IH A+ ++ + ++ + LI + +SL Sbjct: 2218 KERNIQFQRYNKLRHSVIHIQAIFRGMKVRRHLKTMHIAATLIQRRFRTLMMRRRFLSLK 2277 Query: 598 PFATFLSKIYRLQIRRKINLNQTQLTN--FYLQSSYR 494 A ++ + YR + K +L +L N +QSSYR Sbjct: 2278 KTAIWIQRKYRAHLCTKHHLQFLRLQNAAIKIQSSYR 2314
>sp|P21421|RPOB_PLAFA DNA-directed RNA polymerase beta chain Length = 1024 Score = 30.8 bits (68), Expect = 4.3 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 1/100 (1%) Frame = -2 Query: 766 IYKVNFYKIKNSCFRYYNKFKHKLIHQMALNNQKQSISSLQTSTRLIH-QT*IISLSPFA 590 +Y N Y KN YN +K I + N K S +I + II L+ F Sbjct: 178 LYLNNIYINKNISLFIYNNIINKKI--LIYNYIKFIYSKYNNINNIISLKLFIIKLNKFN 235 Query: 589 TFLSKIYRLQIRRKINLNQTQLTNFYLQSSYREAFYEIDD 470 + L I I LN + ++FY+ + Y + FY I D Sbjct: 236 NIYINL--LNILFSIKLNFSYYSDFYINNIYNKKFYSIID 273
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,001,529
Number of Sequences: 369166
Number of extensions: 1439050
Number of successful extensions: 3345
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3345
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7308943600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
