Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_M20
(562 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P61228|YKKB_CAEEL Hypothetical protein C02F5.13 in chrom... 47 3e-05
sp|Q8M355|RMAR_SACCA Mitochondrial ribosomal protein VAR1 37 0.044
sp|P81295|PRR3_JUNAS Pathogenesis-related protein precursor... 34 0.28
sp|Q01221|VB17_VACCV Protein B17 33 0.48
sp|P33878|VB17_VARV Protein B17 33 0.63
sp|P21075|VB17_VACCC Protein B17 33 0.63
sp|P62283|ASPM_AOTVO Abnormal spindle-like microcephaly-ass... 32 0.82
sp|P62296|ASPM_SAIBB Abnormal spindle-like microcephaly-ass... 32 1.1
sp|Q07657|SHS1_YEAST Seventh homolog of septin 1 (Septation... 31 2.4
sp|P57117|GIDA_BUCAI tRNA uridine 5-carboxymethylaminomethy... 30 3.1
>sp|P61228|YKKB_CAEEL Hypothetical protein C02F5.13 in chromosome III
Length = 210
Score = 47.0 bits (110), Expect = 3e-05
Identities = 34/108 (31%), Positives = 41/108 (37%), Gaps = 4/108 (3%)
Frame = +2
Query: 206 KSKCLK--SYSVKSFYLTN--CSVHNDVLCLGNRQFHKMLPCNWTEGKSWLTAXXXXXXX 373
+ KCLK Y + TN C V + C G R F K PC G +LT
Sbjct: 97 EGKCLKMGGYRAEDVEFTNVKCRVLPCIECHGPRTFTKSTPCIIYNGHYFLTTLLYSIFL 156
Query: 374 XXXXADRFYLGMWQMXXXXXXXXXXXXVWTFVDWILIAFGYLKPSDGS 517
DRF LG M +W VD L+ G L P+D S
Sbjct: 157 GVVAVDRFCLGYSAMAVGKLMTLGGFGIWWIVDIFLLVLGVLGPADDS 204
>sp|Q8M355|RMAR_SACCA Mitochondrial ribosomal protein VAR1
Length = 326
Score = 36.6 bits (83), Expect = 0.044
Identities = 25/116 (21%), Positives = 56/116 (48%)
Frame = -3
Query: 536 NKFKHKLIHQMALNNQKQSISSLQTSTRLIHQT*IISLSPFATFLSKIYRLQIRRKINLN 357
NK +KL++ + +NN ++++ + II + P ++ ++ IN N
Sbjct: 79 NKLLYKLMNMIMINNMTMNVNNKNNNN-------IIMMKPMYQYMMNKLNIKFYYYIN-N 130
Query: 356 QTQLTNFYLQSSYREAFYEIDDCPNIKRHYEQNNLLSKMISRNNFLDILTF*YKYN 189
TN+Y+ Y+ +++ N+ + NN++S I++N ++++ Y YN
Sbjct: 131 NNMNTNYYMNMLYK-LMNTLNNNNNMYMN-NMNNIMSMYINKNINIEMIKLNYVYN 184
>sp|P81295|PRR3_JUNAS Pathogenesis-related protein precursor (Pollen allergen Jun a 3)
Length = 225
Score = 33.9 bits (76), Expect = 0.28
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Frame = +2
Query: 89 NATC--QLKINAVCNKKSEIYRS--YICHYCY--QVPQINYTCIKKSKCLKSYS 232
NA C +LK++ CN ++++ Y C Y P NY+ I K++C ++YS
Sbjct: 149 NAVCPSELKVDGGCNSACNVFKTDQYCCRNAYVDNCPATNYSKIFKNQCPQAYS 202
>sp|Q01221|VB17_VACCV Protein B17
Length = 340
Score = 33.1 bits (74), Expect = 0.48
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 152 YICHYCYQVPQINYTCIKKSKCLKSYSVKSFYLTNCSVHNDVLCLGNRQF---HKMLPCN 322
Y+C Y +N+ CI +C + +TNC ++N++ + +F ++ CN
Sbjct: 41 YMCRYT----TLNHNCINVRRCALDSKLLHDIITNCKIYNNIELVRATKFVYYLDLIKCN 96
Query: 323 W 325
W
Sbjct: 97 W 97
>sp|P33878|VB17_VARV Protein B17
Length = 340
Score = 32.7 bits (73), Expect = 0.63
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 152 YICHYCYQVPQINYTCIKKSKCLKSYSVKSFYLTNCSVHNDVLCLGNRQF---HKMLPCN 322
Y+C Y +N+ C+ +C + +TNC ++N++ + +F ++ CN
Sbjct: 41 YMCRYTI----LNHNCVNVRRCALDSKLLHDIITNCKIYNNIELVRATKFVYYLDLIKCN 96
Query: 323 W 325
W
Sbjct: 97 W 97
>sp|P21075|VB17_VACCC Protein B17
Length = 340
Score = 32.7 bits (73), Expect = 0.63
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 152 YICHYCYQVPQINYTCIKKSKCLKSYSVKSFYLTNCSVHNDVLCLGNRQF---HKMLPCN 322
Y+C Y +N+ C+ +C + +TNC ++N++ + +F ++ CN
Sbjct: 41 YMCRYT----TLNHNCVNVRRCALDSKLLHDIITNCKIYNNIELVRATKFVYYLDLIKCN 96
Query: 323 W 325
W
Sbjct: 97 W 97
>sp|P62283|ASPM_AOTVO Abnormal spindle-like microcephaly-associated protein homolog
Length = 3473
Score = 32.3 bits (72), Expect = 0.82
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Frame = -3
Query: 560 KNSCFRYYNKFKHKLIHQMALNNQKQSISSLQTS-----------TRLIHQT*IISLSPF 414
+N F+ YNK +H +IH A+ ++ L+T L+ + +SL
Sbjct: 2225 RNIQFQRYNKLRHSVIHIQAIFRGMKARRHLKTMHIAATLIQRRFRTLMMRRRFLSLKKT 2284
Query: 413 ATFLSKIYRLQIRRKINLNQTQLTN--FYLQSSYR 315
A ++ + YR + K +L +L N +QSSYR
Sbjct: 2285 AIWVQRKYRAHLCTKHHLQFLRLQNAAIKIQSSYR 2319
>sp|P62296|ASPM_SAIBB Abnormal spindle-like microcephaly-associated protein homolog
Length = 3469
Score = 32.0 bits (71), Expect = 1.1
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Frame = -3
Query: 560 KNSCFRYYNKFKHKLIHQMAL---NNQKQSISSLQTSTRLIH--------QT*IISLSPF 414
+N F+ YNK +H +IH A+ ++ + ++ + LI + +SL
Sbjct: 2220 RNIQFQRYNKLRHSVIHIQAIFRGMKVRRHLKTMHIAATLIQRRFRTLMMRRRFLSLKKT 2279
Query: 413 ATFLSKIYRLQIRRKINLNQTQLTN--FYLQSSYR 315
A ++ + YR + K +L +L N +QSSYR
Sbjct: 2280 AIWIQRKYRAHLCTKHHLQFLRLQNAAIKIQSSYR 2314
>sp|Q07657|SHS1_YEAST Seventh homolog of septin 1 (Septation protein 7)
Length = 551
Score = 30.8 bits (68), Expect = 2.4
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = -3
Query: 533 KFKHKLIHQMALNNQKQSISSLQTSTR 453
K + KLI+Q LN SI+SLQ STR
Sbjct: 505 KLREKLINQNKLNGSSSSINSLQQSTR 531
>sp|P57117|GIDA_BUCAI tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA
(Glucose-inhibited division protein A)
Length = 628
Score = 30.4 bits (67), Expect = 3.1
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 14/120 (11%)
Frame = -3
Query: 485 QSISSLQTSTRLIHQT*IISLSPFATFLSKIYRLQIRRKIN----LNQTQLTNFYLQS-- 324
Q + ++QT + + I +SP A L K+Y + + ++I+ L + Q+ LQS
Sbjct: 468 QKVLNIQTEMNRLKKNKISPISPDADILKKLYNINLIKEISMSELLKRPQIRYQDLQSLE 527
Query: 323 SYREAFYEIDDCPNIKRHYEQNNLLSK--------MISRNNFLDILTF*YKYN*FEGLDN 168
S+R +++ I+ + + + + + N FL + Y YN GL +
Sbjct: 528 SFRTGIVDLEAIGQIENEIKYAGYIKRQSEEIERHLKNENTFLSSI---YDYNKIRGLSS 584
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,467,294
Number of Sequences: 369166
Number of extensions: 995374
Number of successful extensions: 2296
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2296
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4029688280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)