Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_M22
(779 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P61228|YKKB_CAEEL Hypothetical protein C02F5.13 in chrom... 47 6e-05
sp|Q8M355|RMAR_SACCA Mitochondrial ribosomal protein VAR1 37 0.079
sp|P81295|PRR3_JUNAS Pathogenesis-related protein precursor... 34 0.39
sp|Q01221|VB17_VACCV Protein B17 33 0.87
sp|P33878|VB17_VARV Protein B17 33 1.1
sp|P21075|VB17_VACCC Protein B17 33 1.1
sp|P62283|ASPM_AOTVO Abnormal spindle-like microcephaly-ass... 32 1.5
sp|P36583|PCK2_SCHPO Protein kinase C-like 2 32 1.9
sp|P62296|ASPM_SAIBB Abnormal spindle-like microcephaly-ass... 32 2.5
sp|P21421|RPOB_PLAFA DNA-directed RNA polymerase beta chain 31 4.3
>sp|P61228|YKKB_CAEEL Hypothetical protein C02F5.13 in chromosome III
Length = 210
Score = 47.0 bits (110), Expect = 6e-05
Identities = 34/108 (31%), Positives = 41/108 (37%), Gaps = 4/108 (3%)
Frame = +1
Query: 385 KSKCLK--SYSVKSFYLTN--CSVHNDVLCLGNRQFHKMLPCNWTEGKSWLTAXXXXXXX 552
+ KCLK Y + TN C V + C G R F K PC G +LT
Sbjct: 97 EGKCLKMGGYRAEDVEFTNVKCRVLPCIECHGPRTFTKSTPCIIYNGHYFLTTLLYSIFL 156
Query: 553 XXXXADRFYLGMWQMXXXXXXXXXXXXVWTFVDWILIAFGYLKPSDGS 696
DRF LG M +W VD L+ G L P+D S
Sbjct: 157 GVVAVDRFCLGYSAMAVGKLMTLGGFGIWWIVDIFLLVLGVLGPADDS 204
>sp|Q8M355|RMAR_SACCA Mitochondrial ribosomal protein VAR1
Length = 326
Score = 36.6 bits (83), Expect = 0.079
Identities = 25/116 (21%), Positives = 56/116 (48%)
Frame = -2
Query: 715 NKFKHKLIHQMALNNQKQSISSLQTSTRLTHQT*IISLSPFATFLSKIYRLQIRRKINLN 536
NK +KL++ + +NN ++++ + II + P ++ ++ IN N
Sbjct: 79 NKLLYKLMNMIMINNMTMNVNNKNNNN-------IIMMKPMYQYMMNKLNIKFYYYIN-N 130
Query: 535 QTQLTNFYLQSSYREAFYEIDDCPNIKRHYEQNNLLSKMISRNNFLDILTF*YKYN 368
TN+Y+ Y+ +++ N+ + NN++S I++N ++++ Y YN
Sbjct: 131 NNMNTNYYMNMLYK-LMNTLNNNNNMYMN-NMNNIMSMYINKNINIEMIKLNYVYN 184
>sp|P81295|PRR3_JUNAS Pathogenesis-related protein precursor (Pollen allergen Jun a 3)
Length = 225
Score = 34.3 bits (77), Expect = 0.39
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Frame = +1
Query: 154 FSKSFQNICDFSNKDCQSVPVDCLNCTLVKTCTYGRR--YNATC--QLKINAVCNKKSEI 321
+++S Q+ D S D ++P+ +N T + + NA C +LK++ CN +
Sbjct: 110 YTQSDQDYYDVSLVDGFNIPL-AINPTNAQCTAPACKADINAVCPSELKVDGGCNSACNV 168
Query: 322 YRS--YICHYCY--QVPQINYTCIKKSKCLKSYS 411
+++ Y C Y P NY+ I K++C ++YS
Sbjct: 169 FKTDQYCCRNAYVDNCPATNYSKIFKNQCPQAYS 202
>sp|Q01221|VB17_VACCV Protein B17
Length = 340
Score = 33.1 bits (74), Expect = 0.87
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +1
Query: 331 YICHYCYQVPQINYTCIKKSKCLKSYSVKSFYLTNCSVHNDVLCLGNRQF---HKMLPCN 501
Y+C Y +N+ CI +C + +TNC ++N++ + +F ++ CN
Sbjct: 41 YMCRYT----TLNHNCINVRRCALDSKLLHDIITNCKIYNNIELVRATKFVYYLDLIKCN 96
Query: 502 W 504
W
Sbjct: 97 W 97
>sp|P33878|VB17_VARV Protein B17
Length = 340
Score = 32.7 bits (73), Expect = 1.1
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +1
Query: 331 YICHYCYQVPQINYTCIKKSKCLKSYSVKSFYLTNCSVHNDVLCLGNRQF---HKMLPCN 501
Y+C Y +N+ C+ +C + +TNC ++N++ + +F ++ CN
Sbjct: 41 YMCRYTI----LNHNCVNVRRCALDSKLLHDIITNCKIYNNIELVRATKFVYYLDLIKCN 96
Query: 502 W 504
W
Sbjct: 97 W 97
>sp|P21075|VB17_VACCC Protein B17
Length = 340
Score = 32.7 bits (73), Expect = 1.1
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +1
Query: 331 YICHYCYQVPQINYTCIKKSKCLKSYSVKSFYLTNCSVHNDVLCLGNRQF---HKMLPCN 501
Y+C Y +N+ C+ +C + +TNC ++N++ + +F ++ CN
Sbjct: 41 YMCRYT----TLNHNCVNVRRCALDSKLLHDIITNCKIYNNIELVRATKFVYYLDLIKCN 96
Query: 502 W 504
W
Sbjct: 97 W 97
>sp|P62283|ASPM_AOTVO Abnormal spindle-like microcephaly-associated protein homolog
Length = 3473
Score = 32.3 bits (72), Expect = 1.5
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 13/97 (13%)
Frame = -2
Query: 745 KIKNSCFRYYNKFKHKLIHQMALNNQKQSISSLQTS-----------TRLTHQT*IISLS 599
K +N F+ YNK +H +IH A+ ++ L+T L + +SL
Sbjct: 2223 KERNIQFQRYNKLRHSVIHIQAIFRGMKARRHLKTMHIAATLIQRRFRTLMMRRRFLSLK 2282
Query: 598 PFATFLSKIYRLQIRRKINLNQTQLTN--FYLQSSYR 494
A ++ + YR + K +L +L N +QSSYR
Sbjct: 2283 KTAIWVQRKYRAHLCTKHHLQFLRLQNAAIKIQSSYR 2319
>sp|P36583|PCK2_SCHPO Protein kinase C-like 2
Length = 1016
Score = 32.0 bits (71), Expect = 1.9
Identities = 25/103 (24%), Positives = 46/103 (44%)
Frame = -2
Query: 778 QNTKIYKVNFYKIKNSCFRYYNKFKHKLIHQMALNNQKQSISSLQTSTRLTHQT*IISLS 599
+ TKIYK +K K+S ++++ K K N K S+S T+T + S
Sbjct: 538 RTTKIYKAQQHKQKSSHHKHHHHKKSKSSSSKHKENDKASVSITTTTTPSITPADPVPTS 597
Query: 598 PFATFLSKIYRLQIRRKINLNQTQLTNFYLQSSYREAFYEIDD 470
P + + R + NL T +++ L ++ + ++DD
Sbjct: 598 PKPLAIEPVKRKPVHAG-NLEVTSVSDNKLGATVQVVEQKVDD 639
>sp|P62296|ASPM_SAIBB Abnormal spindle-like microcephaly-associated protein homolog
Length = 3469
Score = 31.6 bits (70), Expect = 2.5
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Frame = -2
Query: 745 KIKNSCFRYYNKFKHKLIHQMALNNQKQSISSLQTS-----------TRLTHQT*IISLS 599
K +N F+ YNK +H +IH A+ + L+T L + +SL
Sbjct: 2218 KERNIQFQRYNKLRHSVIHIQAIFRGMKVRRHLKTMHIAATLIQRRFRTLMMRRRFLSLK 2277
Query: 598 PFATFLSKIYRLQIRRKINLNQTQLTN--FYLQSSYR 494
A ++ + YR + K +L +L N +QSSYR
Sbjct: 2278 KTAIWIQRKYRAHLCTKHHLQFLRLQNAAIKIQSSYR 2314
>sp|P21421|RPOB_PLAFA DNA-directed RNA polymerase beta chain
Length = 1024
Score = 30.8 bits (68), Expect = 4.3
Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 5/104 (4%)
Frame = -2
Query: 766 IYKVNFYKIKNSCFRYYNKFKHKLIHQMALNNQKQSISSLQTSTRLTHQT*IISLSPFAT 587
+Y N Y KN YN +K I + N + I S + + IISL F
Sbjct: 178 LYLNNIYINKNISLFIYNNIINKKI---LIYNYIKFIYS-----KYNNINNIISLKLFII 229
Query: 586 FLSK-----IYRLQIRRKINLNQTQLTNFYLQSSYREAFYEIDD 470
L+K I L I I LN + ++FY+ + Y + FY I D
Sbjct: 230 KLNKFNNIYINLLNILFSIKLNFSYYSDFYINNIYNKKFYSIID 273
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,602,659
Number of Sequences: 369166
Number of extensions: 1424450
Number of successful extensions: 3336
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3336
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7308943600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)