Planaria EST Database

DrC_00469

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00469
         (925 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P20964|OBG_BACSU  Spo0B-associated GTP-binding protein         132   1e-30
sp|O25074|Y303_HELPY  Probable GTP-binding protein HP0303         125   2e-28
sp|Q9ZMD3|Y303_HELPJ  Probable GTP-binding protein JHP0288        125   2e-28
sp|P46584|Y2357_CORGL  Probable GTP-binding protein Cgl2357/...   123   8e-28
sp|Q9H4K7|GTPB5_HUMAN  Putative GTP-binding protein 5             122   2e-27
sp|P57469|Y389_BUCAI  Hypothetical GTP-binding protein BU389      119   2e-26
sp|P42641|YHBZ_ECOLI  Hypothetical GTP-binding protein yhbZ       116   8e-26
sp|P44915|Y877_HAEIN  Hypothetical GTP-binding protein HI0877     114   4e-25
sp|Q8K9G1|Y376_BUCAP  Hypothetical GTP-binding protein BUsg376    114   5e-25
sp|P47624|Y384_MYCGE  Probable GTP-binding protein MG384          111   3e-24

>sp|P20964|OBG_BACSU Spo0B-associated GTP-binding protein
          Length = 428

 Score =  132 bits (333), Expect = 1e-30
 Identities = 77/200 (38%), Positives = 113/200 (56%), Gaps = 17/200 (8%)
 Frame = +1

Query: 37  HGKN---VYIKVPKGVDVSYKSGEFI--GTINKSDTMVVCRGGEGG------------GP 165
           HG+N   + IKVP G  V+    + +           V+ RGG GG             P
Sbjct: 78  HGRNADDMVIKVPPGTVVTDDDTKQVIADLTEHGQRAVIARGGRGGRGNSRFATPANPAP 137

Query: 166 FNNYMAKPQEVTSIVINLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQV 345
             +   +P +   IV+ LK++AD+GLVGFP+ GKS+LL+ +S A  KI +Y FTTL P +
Sbjct: 138 QLSENGEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNL 197

Query: 346 ATINYPDHRSITIADLPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDVYGFKLESKRFN 525
             +   D RS  +ADLPG+IEGAH  +GLG  FL+H+ERT++++ VID+ G +       
Sbjct: 198 GMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLE------- 250

Query: 526 SSYRSPFETILLLNQEL*DF 585
              R P++  L +NQEL ++
Sbjct: 251 --GRDPYDDYLTINQELSEY 268

>sp|O25074|Y303_HELPY Probable GTP-binding protein HP0303
          Length = 360

 Score =  125 bits (314), Expect = 2e-28
 Identities = 77/200 (38%), Positives = 109/200 (54%), Gaps = 24/200 (12%)
 Frame = +1

Query: 31  GSHGKNVYIKVPKGVDVSYKSGEFIGTINKSDTMVVCRGGEGG-GPFNNYMAKPQEVT-- 201
           G  G++  I VP G  V      ++  +   + ++  +GG+GG G  +   A  Q+ T  
Sbjct: 79  GKKGEDKIIVVPPGTQVFVGDELWLDLVEPKERVLALKGGKGGLGNAHFKSATKQQPTYA 138

Query: 202 ---------SIVINLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQVATI 354
                     + + LKLIADIGLVGFPNAGKS+L++ IS A  KI NY FTTL P +  +
Sbjct: 139 QKGLEGVEKCVRLELKLIADIGLVGFPNAGKSTLISTISNAKPKIANYEFTTLVPNLGVV 198

Query: 355 NYPDHRSITIADLPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDV-----------YGF 501
           +  +     +AD+PGIIEGA    GLG  FLKH+ERTK+L FV+D               
Sbjct: 199 SVDEKSGFLMADIPGIIEGASEGKGLGISFLKHIERTKVLAFVLDASRLDLGIKEQYQRL 258

Query: 502 KLESKRFNSSY-RSPFETIL 558
           +LE ++F+S+    PF  +L
Sbjct: 259 RLELEKFSSALANKPFGVLL 278

>sp|Q9ZMD3|Y303_HELPJ Probable GTP-binding protein JHP0288
          Length = 360

 Score =  125 bits (313), Expect = 2e-28
 Identities = 74/179 (41%), Positives = 101/179 (56%), Gaps = 16/179 (8%)
 Frame = +1

Query: 31  GSHGKNVYIKVPKGVDVSYKSGEFIGTINKSDTMVVCRGGEGG-GPFNNYMAKPQEVT-- 201
           G  G++  I VP G  V      ++  +   + ++  +GG+GG G  +   A  Q+ T  
Sbjct: 79  GKKGEDKIIVVPPGTQVFVGDELWLDLVEPKERVLALKGGKGGLGNAHFKSATKQQPTYA 138

Query: 202 ---------SIVINLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQVATI 354
                     + + LKLIADIGLVGFPNAGKS+L++ IS A  KI NY FTTL P +  +
Sbjct: 139 QKGLEGVEKCVRLELKLIADIGLVGFPNAGKSTLISTISNAKPKIANYEFTTLVPNLGVV 198

Query: 355 NYPDHRSITIADLPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDV----YGFKLESKR 519
           +  +     +AD+PGIIEGA    GLG  FLKH+ERTK+L FV+D      G K + KR
Sbjct: 199 SVDEKSEFLMADIPGIIEGASEGKGLGISFLKHIERTKVLAFVLDASRLDLGIKEQYKR 257

>sp|P46584|Y2357_CORGL Probable GTP-binding protein Cgl2357/cg2589
          Length = 501

 Score =  123 bits (308), Expect = 8e-28
 Identities = 65/166 (39%), Positives = 97/166 (58%), Gaps = 13/166 (7%)
 Frame = +1

Query: 31  GSHGKNVYIKVPKGVDVSYKSGEFIGTINKSDTMVVCRGGEGGGPFNNYMA--------- 183
           G+ GK++ ++VP G  V  + GE +  +       +   G  GG  N  +A         
Sbjct: 81  GARGKDLVLEVPPGTVVLNEKGETLADLTSVGMKFIAAAGGNGGLGNAALASKARKAPGF 140

Query: 184 ----KPQEVTSIVINLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQVAT 351
               +P E   +++ LK +AD+GLVGFP+AGKSSL++ +S A  KIG+Y FTTL P +  
Sbjct: 141 ALIGEPGEAHDLILELKSMADVGLVGFPSAGKSSLISVMSAAKPKIGDYPFTTLQPNLGV 200

Query: 352 INYPDHRSITIADLPGIIEGAHVNIGLGFHFLKHVERTKLLLFVID 489
           +N   H + T+AD+PG+I GA    GLG  FL+H+ERT +L+ V+D
Sbjct: 201 VNV-GHETFTMADVPGLIPGASEGKGLGLDFLRHIERTSVLVHVVD 245


 Score = 30.8 bits (68), Expect = 5.6
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 596 LINKPAICLLNKIDKPEGESIAESIKDTI 682
           L  +P + +LNK D PE E +AE +K+ I
Sbjct: 282 LSQRPRLVVLNKADVPEAEELAEFLKEDI 310

>sp|Q9H4K7|GTPB5_HUMAN Putative GTP-binding protein 5
          Length = 406

 Score =  122 bits (305), Expect = 2e-27
 Identities = 68/171 (39%), Positives = 96/171 (56%), Gaps = 13/171 (7%)
 Frame = +1

Query: 19  QSILGSHGKNVYIKVPKGVDVSYKSGEFIGTIN-KSDTMVVCRGGEGGGPFNNYMA---- 183
           ++  G  G  +YI+VP G  V  + G  +  ++   D  +   GG GG     ++A    
Sbjct: 143 KNCFGRSGAVLYIRVPVGTLVK-EGGRVVADLSCVGDEYIAALGGAGGKGNRFFLANNNR 201

Query: 184 --------KPQEVTSIVINLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSP 339
                   +P +   + + LK +A  G+VGFPNAGKSSLL  IS A   + +Y FTTL P
Sbjct: 202 APVTCTPGQPGQQRVLHLELKTVAHAGMVGFPNAGKSSLLRAISNARPAVASYPFTTLKP 261

Query: 340 QVATINYPDHRSITIADLPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDV 492
            V  ++Y  H  I +AD+PGII GAH N GLG  FL+H+ER + LLFV+D+
Sbjct: 262 HVGIVHYEGHLQIAVADIPGIIRGAHQNRGLGSAFLRHIERCRFLLFVVDL 312

>sp|P57469|Y389_BUCAI Hypothetical GTP-binding protein BU389
          Length = 334

 Score =  119 bits (297), Expect = 2e-26
 Identities = 68/168 (40%), Positives = 95/168 (56%), Gaps = 14/168 (8%)
 Frame = +1

Query: 31  GSHGKNVYIKVPKGVDV-SYKSGEFIGT-INKSDTMVVCRGGEGG------------GPF 168
           G  G ++ I VP G  V +Y++ E IG  I     M++ +GG  G             P 
Sbjct: 80  GKKGDDIKIHVPIGTKVINYQTREIIGDLIQHKQKMLIAKGGWHGLGNARFKSSTNRTPR 139

Query: 169 NNYMAKPQEVTSIVINLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQVA 348
            + +    E   I + L L+AD+G +G PN GKS+L+  ISGA  KI +Y FTTL P + 
Sbjct: 140 QSTLGSIGEKRDIQLELMLLADVGTLGMPNVGKSTLVTNISGAKTKISDYPFTTLHPVLG 199

Query: 349 TINYPDHRSITIADLPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDV 492
           ++N   ++   IAD+PGII+GA    GLG  FLKH+ER KLLL +ID+
Sbjct: 200 SVNIQKNKKFIIADIPGIIKGASYGAGLGIRFLKHLERCKLLLHIIDL 247

>sp|P42641|YHBZ_ECOLI Hypothetical GTP-binding protein yhbZ
          Length = 390

 Score =  116 bits (291), Expect = 8e-26
 Identities = 63/168 (37%), Positives = 95/168 (56%), Gaps = 14/168 (8%)
 Frame = +1

Query: 31  GSHGKNVYIKVPKGVDV-SYKSGEFIGTINK-SDTMVVCRGGEGG------------GPF 168
           G  GK+V IKVP G  V    +GE +G + K    ++V +GG  G             P 
Sbjct: 80  GKRGKDVTIKVPVGTRVIDQGTGETMGDMTKHGQRLLVAKGGWHGLGNTRFKSSVNRTPR 139

Query: 169 NNYMAKPQEVTSIVINLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQVA 348
                 P +   +++ L L+AD+G++G PNAGKS+ +  +S A  K+ +Y FTTL P + 
Sbjct: 140 QKTNGTPGDKRELLLELMLLADVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLG 199

Query: 349 TINYPDHRSITIADLPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDV 492
            +   + +S  +AD+PG+IEGA    GLG  FLKH+ER ++LL +ID+
Sbjct: 200 VVRMDNEKSFVVADIPGLIEGAAEGAGLGIRFLKHLERCRVLLHLIDI 247

>sp|P44915|Y877_HAEIN Hypothetical GTP-binding protein HI0877
          Length = 390

 Score =  114 bits (285), Expect = 4e-25
 Identities = 59/168 (35%), Positives = 93/168 (55%), Gaps = 14/168 (8%)
 Frame = +1

Query: 31  GSHGKNVYIKVPKGVD-VSYKSGEFIGTINK-SDTMVVCRGGEGG------------GPF 168
           G  GK++ + VP G   +   + E +G + +    M+V +GG  G             P 
Sbjct: 80  GRRGKDIILPVPVGTRAIDNDTKETLGDLTQHGQKMLVAKGGYHGLGNTRFKSSVNRAPR 139

Query: 169 NNYMAKPQEVTSIVINLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQVA 348
              M  P E   +++ L L+AD+G++G PNAGKS+ +  +S A  K+ +Y FTTL P + 
Sbjct: 140 QKTMGTPGEKRDLLLELMLLADVGMLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLG 199

Query: 349 TINYPDHRSITIADLPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDV 492
            +   D  S  +AD+PG+IEGA    GLG  FLKH+ER ++L+ ++D+
Sbjct: 200 VVKVDDSHSFVVADIPGLIEGAADGAGLGIRFLKHLERCRVLIHLVDI 247

>sp|Q8K9G1|Y376_BUCAP Hypothetical GTP-binding protein BUsg376
          Length = 333

 Score =  114 bits (284), Expect = 5e-25
 Identities = 70/196 (35%), Positives = 106/196 (54%), Gaps = 14/196 (7%)
 Frame = +1

Query: 31  GSHGKNVYIKVPKGVDV-SYKSGEFIGTINK-SDTMVVCRGGEGG------------GPF 168
           G  G ++ I VP G  + +Y++ E IG + K    +++ +GG  G             P 
Sbjct: 80  GKKGSDIKIYVPVGTKIINYQTREIIGDLIKHKQKILIAKGGWHGLGNTRFKSSINRTPR 139

Query: 169 NNYMAKPQEVTSIVINLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQVA 348
              +    E   I + L LIAD+G +G PNAGKS+L+  ISGA  KI NY FTTL+P + 
Sbjct: 140 QRTLGSVGEKRDIQLELILIADVGTLGMPNAGKSTLVKSISGAKTKIANYPFTTLNPVLG 199

Query: 349 TINYPDHRSITIADLPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDVYGFKLESKRFNS 528
           ++N  + +   IAD+PGI++ A    GLG  FLKH+ER K+LL ++D+           +
Sbjct: 200 SVN-TEGKKFIIADIPGIMQNASQGFGLGVRFLKHLERCKILLHIVDL---------CPT 249

Query: 529 SYRSPFETILLLNQEL 576
            + +P E I ++  EL
Sbjct: 250 DHSNPVENIRIILNEL 265

>sp|P47624|Y384_MYCGE Probable GTP-binding protein MG384
          Length = 433

 Score =  111 bits (278), Expect = 3e-24
 Identities = 60/168 (35%), Positives = 99/168 (58%), Gaps = 14/168 (8%)
 Frame = +1

Query: 31  GSHGKNVYIKVPKGVDVSY--KSGEFIGTINKSDTMVVCRGGEGG---GPFNN-YMAKPQ 192
           G +G ++ IKVP G  V     +   +  ++   + ++C GG+GG     F +  M  P 
Sbjct: 80  GKNGSDLLIKVPIGTTVKNLENNSVLVDFVHDKQSFILCFGGKGGKGNAAFKSPIMRAPN 139

Query: 193 --------EVTSIVINLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQVA 348
                   E+ ++ + +K +A++G+VGFPN+GKS+L++K+S A  KI NY FTTL P + 
Sbjct: 140 LYENGDKGEILNVSLEVKYLANVGIVGFPNSGKSTLISKLSNAKPKIANYRFTTLIPVLG 199

Query: 349 TINYPDHRSITIADLPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDV 492
            + Y  + S+  AD+PG+IE A    GLG  FL+H+ER ++L+ +I +
Sbjct: 200 VVKY-QNNSLVFADIPGLIENASEGSGLGHDFLRHIERCEILIHLISL 246

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,644,504
Number of Sequences: 369166
Number of extensions: 1958276
Number of successful extensions: 6988
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6951
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9462723610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00469

  1. Dr_sW_015_N13
  2. Dr_sW_012_I07