Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_I07
(924 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P20964|OBG_BACSU Spo0B-associated GTP-binding protein 153 8e-37
sp|Q9ZMD3|Y303_HELPJ Probable GTP-binding protein JHP0288 143 8e-34
sp|P46584|Y2357_CORGL Probable GTP-binding protein Cgl2357/... 140 5e-33
sp|O25074|Y303_HELPY Probable GTP-binding protein HP0303 140 5e-33
sp|Q9H4K7|GTPB5_HUMAN Putative GTP-binding protein 5 139 1e-32
sp|Q8K9G1|Y376_BUCAP Hypothetical GTP-binding protein BUsg376 135 2e-31
sp|P57469|Y389_BUCAI Hypothetical GTP-binding protein BU389 132 1e-30
sp|P42641|YHBZ_ECOLI Hypothetical GTP-binding protein yhbZ 130 7e-30
sp|P47624|Y384_MYCGE Probable GTP-binding protein MG384 127 6e-29
sp|P44915|Y877_HAEIN Hypothetical GTP-binding protein HI0877 124 3e-28
>sp|P20964|OBG_BACSU Spo0B-associated GTP-binding protein
Length = 428
Score = 153 bits (386), Expect = 8e-37
Identities = 88/232 (37%), Positives = 129/232 (55%), Gaps = 17/232 (7%)
Frame = +1
Query: 37 HGKN---VYIKVPKGVDVSYKSGEFI--GTINKSDTMVVCRGGEGG------------GP 165
HG+N + IKVP G V+ + + V+ RGG GG P
Sbjct: 78 HGRNADDMVIKVPPGTVVTDDDTKQVIADLTEHGQRAVIARGGRGGRGNSRFATPANPAP 137
Query: 166 FNNYMAKPQEVTSIVINLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQV 345
+ +P + IV+ LK++AD+GLVGFP+ GKS+LL+ +S A KI +Y FTTL P +
Sbjct: 138 QLSENGEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNL 197
Query: 346 ATINYPDHRSITIADLPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDVYGFKLESKRFN 525
+ D RS +ADLPG+IEGAH +GLG FL+H+ERT++++ VID+ G +
Sbjct: 198 GMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLE------- 250
Query: 526 SSYRSPFETILLLNQELEIFNPSLINKPAICLLNKIDKPEGESIAESIKDTI 681
R P++ L +NQEL +N L +P I + NK+D PE E+ K+ +
Sbjct: 251 --GRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKL 300
>sp|Q9ZMD3|Y303_HELPJ Probable GTP-binding protein JHP0288
Length = 360
Score = 143 bits (360), Expect = 8e-34
Identities = 93/227 (40%), Positives = 122/227 (53%), Gaps = 12/227 (5%)
Frame = +1
Query: 31 GSHGKNVYIKVPKGVDVSYKSGEFIGTINKSDTMVVCRGGEGG-GPFNNYMAKPQEVT-- 201
G G++ I VP G V ++ + + ++ +GG+GG G + A Q+ T
Sbjct: 79 GKKGEDKIIVVPPGTQVFVGDELWLDLVEPKERVLALKGGKGGLGNAHFKSATKQQPTYA 138
Query: 202 ---------SIVINLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQVATI 354
+ + LKLIADIGLVGFPNAGKS+L++ IS A KI NY FTTL P + +
Sbjct: 139 QKGLEGVEKCVRLELKLIADIGLVGFPNAGKSTLISTISNAKPKIANYEFTTLVPNLGVV 198
Query: 355 NYPDHRSITIADLPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDVYGFKLESKRFNSSY 534
+ + +AD+PGIIEGA GLG FLKH+ERTK+L FV+D L K
Sbjct: 199 SVDEKSEFLMADIPGIIEGASEGKGLGISFLKHIERTKVLAFVLDASRLDLGIK------ 252
Query: 535 RSPFETILLLNQELEIFNPSLINKPAICLLNKIDKPEGESIAESIKD 675
E L ELE F+P+L NKP LLNK D E+I E KD
Sbjct: 253 ----EQYKRLRLELEKFSPTLANKPFGVLLNKCDVV--ENINEMTKD 293
>sp|P46584|Y2357_CORGL Probable GTP-binding protein Cgl2357/cg2589
Length = 501
Score = 140 bits (353), Expect = 5e-33
Identities = 84/239 (35%), Positives = 124/239 (51%), Gaps = 22/239 (9%)
Frame = +1
Query: 31 GSHGKNVYIKVPKGVDVSYKSGEFIGTINKSDTMVVCRGGEGGGPFNNYMA--------- 183
G+ GK++ ++VP G V + GE + + + G GG N +A
Sbjct: 81 GARGKDLVLEVPPGTVVLNEKGETLADLTSVGMKFIAAAGGNGGLGNAALASKARKAPGF 140
Query: 184 ----KPQEVTSIVINLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQVAT 351
+P E +++ LK +AD+GLVGFP+AGKSSL++ +S A KIG+Y FTTL P +
Sbjct: 141 ALIGEPGEAHDLILELKSMADVGLVGFPSAGKSSLISVMSAAKPKIGDYPFTTLQPNLGV 200
Query: 352 INYPDHRSITIADLPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDVYGFKLESKRFNSS 531
+N H + T+AD+PG+I GA GLG FL+H+ERT +L+ V+D
Sbjct: 201 VNV-GHETFTMADVPGLIPGASEGKGLGLDFLRHIERTSVLVHVVDTATM--------DP 251
Query: 532 YRSPFETILLLNQELEIFNPS---------LINKPAICLLNKIDKPEGESIAESIKDTI 681
R P I L EL + + L +P + +LNK D PE E +AE +K+ I
Sbjct: 252 GRDPISDIEALEAELAAYQSALDEDTGLGDLSQRPRLVVLNKADVPEAEELAEFLKEDI 310
>sp|O25074|Y303_HELPY Probable GTP-binding protein HP0303
Length = 360
Score = 140 bits (353), Expect = 5e-33
Identities = 90/227 (39%), Positives = 125/227 (55%), Gaps = 12/227 (5%)
Frame = +1
Query: 31 GSHGKNVYIKVPKGVDVSYKSGEFIGTINKSDTMVVCRGGEGG-GPFNNYMAKPQEVT-- 201
G G++ I VP G V ++ + + ++ +GG+GG G + A Q+ T
Sbjct: 79 GKKGEDKIIVVPPGTQVFVGDELWLDLVEPKERVLALKGGKGGLGNAHFKSATKQQPTYA 138
Query: 202 ---------SIVINLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQVATI 354
+ + LKLIADIGLVGFPNAGKS+L++ IS A KI NY FTTL P + +
Sbjct: 139 QKGLEGVEKCVRLELKLIADIGLVGFPNAGKSTLISTISNAKPKIANYEFTTLVPNLGVV 198
Query: 355 NYPDHRSITIADLPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDVYGFKLESKRFNSSY 534
+ + +AD+PGIIEGA GLG FLKH+ERTK+L FV+D + R +
Sbjct: 199 SVDEKSGFLMADIPGIIEGASEGKGLGISFLKHIERTKVLAFVLD-------ASRLDLGI 251
Query: 535 RSPFETILLLNQELEIFNPSLINKPAICLLNKIDKPEGESIAESIKD 675
+ ++ + L ELE F+ +L NKP LLNK D E+I E KD
Sbjct: 252 KEQYQRLRL---ELEKFSSALANKPFGVLLNKCDVV--ENIDEMTKD 293
>sp|Q9H4K7|GTPB5_HUMAN Putative GTP-binding protein 5
Length = 406
Score = 139 bits (349), Expect = 1e-32
Identities = 83/232 (35%), Positives = 121/232 (52%), Gaps = 13/232 (5%)
Frame = +1
Query: 19 QSILGSHGKNVYIKVPKGVDVSYKSGEFIGTIN-KSDTMVVCRGGEGGGPFNNYMA---- 183
++ G G +YI+VP G V + G + ++ D + GG GG ++A
Sbjct: 143 KNCFGRSGAVLYIRVPVGTLVK-EGGRVVADLSCVGDEYIAALGGAGGKGNRFFLANNNR 201
Query: 184 --------KPQEVTSIVINLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSP 339
+P + + + LK +A G+VGFPNAGKSSLL IS A + +Y FTTL P
Sbjct: 202 APVTCTPGQPGQQRVLHLELKTVAHAGMVGFPNAGKSSLLRAISNARPAVASYPFTTLKP 261
Query: 340 QVATINYPDHRSITIADLPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDVYGFKLESKR 519
V ++Y H I +AD+PGII GAH N GLG FL+H+ER + LLFV+D+
Sbjct: 262 HVGIVHYEGHLQIAVADIPGIIRGAHQNRGLGSAFLRHIERCRFLLFVVDL--------- 312
Query: 520 FNSSYRSPFETILLLNQELEIFNPSLINKPAICLLNKIDKPEGESIAESIKD 675
S P+ + L ELE++ L +P + NKID PE ++ ++D
Sbjct: 313 ---SQPEPWTQVDDLKYELEMYEKGLSARPHAIVANKIDLPEAQANLSQLRD 361
>sp|Q8K9G1|Y376_BUCAP Hypothetical GTP-binding protein BUsg376
Length = 333
Score = 135 bits (340), Expect = 2e-31
Identities = 86/243 (35%), Positives = 130/243 (53%), Gaps = 14/243 (5%)
Frame = +1
Query: 31 GSHGKNVYIKVPKGVDV-SYKSGEFIGTINK-SDTMVVCRGGEGG------------GPF 168
G G ++ I VP G + +Y++ E IG + K +++ +GG G P
Sbjct: 80 GKKGSDIKIYVPVGTKIINYQTREIIGDLIKHKQKILIAKGGWHGLGNTRFKSSINRTPR 139
Query: 169 NNYMAKPQEVTSIVINLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQVA 348
+ E I + L LIAD+G +G PNAGKS+L+ ISGA KI NY FTTL+P +
Sbjct: 140 QRTLGSVGEKRDIQLELILIADVGTLGMPNAGKSTLVKSISGAKTKIANYPFTTLNPVLG 199
Query: 349 TINYPDHRSITIADLPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDVYGFKLESKRFNS 528
++N + + IAD+PGI++ A GLG FLKH+ER K+LL ++D+ +
Sbjct: 200 SVN-TEGKKFIIADIPGIMQNASQGFGLGVRFLKHLERCKILLHIVDL---------CPT 249
Query: 529 SYRSPFETILLLNQELEIFNPSLINKPAICLLNKIDKPEGESIAESIKDTINSGKLSNWM 708
+ +P E I ++ EL+ +N SL NKP +LNKID + I + I K+ N++
Sbjct: 250 DHSNPVENIRIILNELKKYNTSLYNKPRWLILNKIDLIKSSEIKKII------DKIKNFL 303
Query: 709 NEE 717
E
Sbjct: 304 KVE 306
>sp|P57469|Y389_BUCAI Hypothetical GTP-binding protein BU389
Length = 334
Score = 132 bits (333), Expect = 1e-30
Identities = 85/236 (36%), Positives = 123/236 (52%), Gaps = 14/236 (5%)
Frame = +1
Query: 31 GSHGKNVYIKVPKGVDV-SYKSGEFIGT-INKSDTMVVCRGGEGG------------GPF 168
G G ++ I VP G V +Y++ E IG I M++ +GG G P
Sbjct: 80 GKKGDDIKIHVPIGTKVINYQTREIIGDLIQHKQKMLIAKGGWHGLGNARFKSSTNRTPR 139
Query: 169 NNYMAKPQEVTSIVINLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQVA 348
+ + E I + L L+AD+G +G PN GKS+L+ ISGA KI +Y FTTL P +
Sbjct: 140 QSTLGSIGEKRDIQLELMLLADVGTLGMPNVGKSTLVTNISGAKTKISDYPFTTLHPVLG 199
Query: 349 TINYPDHRSITIADLPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDVYGFKLESKRFNS 528
++N ++ IAD+PGII+GA GLG FLKH+ER KLLL +ID+
Sbjct: 200 SVNIQKNKKFIIADIPGIIKGASYGAGLGIRFLKHLERCKLLLHIIDL---------VPQ 250
Query: 529 SYRSPFETILLLNQELEIFNPSLINKPAICLLNKIDKPEGESIAESIKDTINSGKL 696
+ P + I + EL+ ++ L NKP + NKID E + + IK+ I K+
Sbjct: 251 NNCHPSDNIKTVLNELKKYSLKLYNKPRWFIFNKIDLLSVEELNQIIKEIIFQFKI 306
>sp|P42641|YHBZ_ECOLI Hypothetical GTP-binding protein yhbZ
Length = 390
Score = 130 bits (326), Expect = 7e-30
Identities = 80/234 (34%), Positives = 121/234 (51%), Gaps = 17/234 (7%)
Frame = +1
Query: 31 GSHGKNVYIKVPKGVDV-SYKSGEFIGTINK-SDTMVVCRGGEGG------------GPF 168
G GK+V IKVP G V +GE +G + K ++V +GG G P
Sbjct: 80 GKRGKDVTIKVPVGTRVIDQGTGETMGDMTKHGQRLLVAKGGWHGLGNTRFKSSVNRTPR 139
Query: 169 NNYMAKPQEVTSIVINLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQVA 348
P + +++ L L+AD+G++G PNAGKS+ + +S A K+ +Y FTTL P +
Sbjct: 140 QKTNGTPGDKRELLLELMLLADVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLG 199
Query: 349 TINYPDHRSITIADLPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDVYGFKLESKRFNS 528
+ + +S +AD+PG+IEGA GLG FLKH+ER ++LL +ID+
Sbjct: 200 VVRMDNEKSFVVADIPGLIEGAAEGAGLGIRFLKHLERCRVLLHLIDIDPI--------- 250
Query: 529 SYRSPFETILLLNQELEIFNPSLINKPAICLLNKI---DKPEGESIAESIKDTI 681
P E ++ ELE ++ L KP + NKI DK E E A++I + +
Sbjct: 251 DGTDPVENARIIISELEKYSQDLATKPRWLVFNKIDLLDKVEAEEKAKAIAEAL 304
>sp|P47624|Y384_MYCGE Probable GTP-binding protein MG384
Length = 433
Score = 127 bits (318), Expect = 6e-29
Identities = 75/237 (31%), Positives = 127/237 (53%), Gaps = 14/237 (5%)
Frame = +1
Query: 31 GSHGKNVYIKVPKGVDVSY--KSGEFIGTINKSDTMVVCRGGEGG---GPFNN-YMAKPQ 192
G +G ++ IKVP G V + + ++ + ++C GG+GG F + M P
Sbjct: 80 GKNGSDLLIKVPIGTTVKNLENNSVLVDFVHDKQSFILCFGGKGGKGNAAFKSPIMRAPN 139
Query: 193 --------EVTSIVINLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQVA 348
E+ ++ + +K +A++G+VGFPN+GKS+L++K+S A KI NY FTTL P +
Sbjct: 140 LYENGDKGEILNVSLEVKYLANVGIVGFPNSGKSTLISKLSNAKPKIANYRFTTLIPVLG 199
Query: 349 TINYPDHRSITIADLPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDVYGFKLESKRFNS 528
+ Y + S+ AD+PG+IE A GLG FL+H+ER ++L+ +I + +
Sbjct: 200 VVKY-QNNSLVFADIPGLIENASEGSGLGHDFLRHIERCEILIHLISLDPVDND------ 252
Query: 529 SYRSPFETILLLNQELEIFNPSLINKPAICLLNKIDKPEGESIAESIKDTINSGKLS 699
P + L + EL ++P L+ K + + NKID EGE + ++ + +S
Sbjct: 253 ---DPCKAYLQIMDELSKYSPLLVKKKMLVVANKIDVNEGEKRFKKLEKFLQKKSIS 306
>sp|P44915|Y877_HAEIN Hypothetical GTP-binding protein HI0877
Length = 390
Score = 124 bits (312), Expect = 3e-28
Identities = 71/229 (31%), Positives = 115/229 (50%), Gaps = 14/229 (6%)
Frame = +1
Query: 31 GSHGKNVYIKVPKGVD-VSYKSGEFIGTINK-SDTMVVCRGGEGG------------GPF 168
G GK++ + VP G + + E +G + + M+V +GG G P
Sbjct: 80 GRRGKDIILPVPVGTRAIDNDTKETLGDLTQHGQKMLVAKGGYHGLGNTRFKSSVNRAPR 139
Query: 169 NNYMAKPQEVTSIVINLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQVA 348
M P E +++ L L+AD+G++G PNAGKS+ + +S A K+ +Y FTTL P +
Sbjct: 140 QKTMGTPGEKRDLLLELMLLADVGMLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLG 199
Query: 349 TINYPDHRSITIADLPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDVYGFKLESKRFNS 528
+ D S +AD+PG+IEGA GLG FLKH+ER ++L+ ++D+
Sbjct: 200 VVKVDDSHSFVVADIPGLIEGAADGAGLGIRFLKHLERCRVLIHLVDIAPI--------- 250
Query: 529 SYRSPFETILLLNQELEIFNPSLINKPAICLLNKIDKPEGESIAESIKD 675
+P + + ++ EL ++ L KP + NKID E E ++
Sbjct: 251 DGSNPADNMAIIESELFQYSEKLSEKPRWLVFNKIDTMSDEEAEERARE 299
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,650,572
Number of Sequences: 369166
Number of extensions: 1961781
Number of successful extensions: 7049
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6991
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9462723610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)