Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_N13
(404 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P20964|OBG_BACSU Spo0B-associated GTP-binding protein 122 4e-28
sp|O25074|Y303_HELPY Probable GTP-binding protein HP0303 114 6e-26
sp|Q9ZMD3|Y303_HELPJ Probable GTP-binding protein JHP0288 114 7e-26
sp|Q9H4K7|GTPB5_HUMAN Putative GTP-binding protein 5 111 5e-25
sp|P57469|Y389_BUCAI Hypothetical GTP-binding protein BU389 105 3e-23
sp|P38860|MTG2_YEAST Mitochondrial GTPase 2 105 4e-23
sp|P46584|Y2357_CORGL Probable GTP-binding protein Cgl2357/... 104 8e-23
sp|Q8K9G1|Y376_BUCAP Hypothetical GTP-binding protein BUsg376 101 5e-22
sp|P42641|YHBZ_ECOLI Hypothetical GTP-binding protein yhbZ 100 1e-21
sp|Q89AE7|Y352_BUCBP Hypothetical GTP-binding protein bbp352 100 1e-21
>sp|P20964|OBG_BACSU Spo0B-associated GTP-binding protein
Length = 428
Score = 122 bits (305), Expect = 4e-28
Identities = 59/126 (46%), Positives = 86/126 (68%)
Frame = +3
Query: 3 VINLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQVATINYPDHRSITIA 182
V+ LK++AD+GLVGFP+ GKS+LL+ +S A KI +Y FTTL P + + D RS +A
Sbjct: 152 VLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMA 211
Query: 183 DLPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDVYGFKLESKRFNSSYRSPFETILLLN 362
DLPG+IEGAH +GLG FL+H+ERT++++ VID+ G + R P++ L +N
Sbjct: 212 DLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLE---------GRDPYDDYLTIN 262
Query: 363 QEL*DF 380
QEL ++
Sbjct: 263 QELSEY 268
>sp|O25074|Y303_HELPY Probable GTP-binding protein HP0303
Length = 360
Score = 114 bits (286), Expect = 6e-26
Identities = 62/128 (48%), Positives = 81/128 (63%), Gaps = 12/128 (9%)
Frame = +3
Query: 6 INLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQVATINYPDHRSITIAD 185
+ LKLIADIGLVGFPNAGKS+L++ IS A KI NY FTTL P + ++ + +AD
Sbjct: 151 LELKLIADIGLVGFPNAGKSTLISTISNAKPKIANYEFTTLVPNLGVVSVDEKSGFLMAD 210
Query: 186 LPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDV-----------YGFKLESKRFNSSY- 329
+PGIIEGA GLG FLKH+ERTK+L FV+D +LE ++F+S+
Sbjct: 211 IPGIIEGASEGKGLGISFLKHIERTKVLAFVLDASRLDLGIKEQYQRLRLELEKFSSALA 270
Query: 330 RSPFETIL 353
PF +L
Sbjct: 271 NKPFGVLL 278
>sp|Q9ZMD3|Y303_HELPJ Probable GTP-binding protein JHP0288
Length = 360
Score = 114 bits (285), Expect = 7e-26
Identities = 59/107 (55%), Positives = 73/107 (68%), Gaps = 4/107 (3%)
Frame = +3
Query: 6 INLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQVATINYPDHRSITIAD 185
+ LKLIADIGLVGFPNAGKS+L++ IS A KI NY FTTL P + ++ + +AD
Sbjct: 151 LELKLIADIGLVGFPNAGKSTLISTISNAKPKIANYEFTTLVPNLGVVSVDEKSEFLMAD 210
Query: 186 LPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDV----YGFKLESKR 314
+PGIIEGA GLG FLKH+ERTK+L FV+D G K + KR
Sbjct: 211 IPGIIEGASEGKGLGISFLKHIERTKVLAFVLDASRLDLGIKEQYKR 257
>sp|Q9H4K7|GTPB5_HUMAN Putative GTP-binding protein 5
Length = 406
Score = 111 bits (278), Expect = 5e-25
Identities = 52/94 (55%), Positives = 66/94 (70%)
Frame = +3
Query: 6 INLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQVATINYPDHRSITIAD 185
+ LK +A G+VGFPNAGKSSLL IS A + +Y FTTL P V ++Y H I +AD
Sbjct: 219 LELKTVAHAGMVGFPNAGKSSLLRAISNARPAVASYPFTTLKPHVGIVHYEGHLQIAVAD 278
Query: 186 LPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDV 287
+PGII GAH N GLG FL+H+ER + LLFV+D+
Sbjct: 279 IPGIIRGAHQNRGLGSAFLRHIERCRFLLFVVDL 312
>sp|P57469|Y389_BUCAI Hypothetical GTP-binding protein BU389
Length = 334
Score = 105 bits (262), Expect = 3e-23
Identities = 49/94 (52%), Positives = 66/94 (70%)
Frame = +3
Query: 6 INLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQVATINYPDHRSITIAD 185
+ L L+AD+G +G PN GKS+L+ ISGA KI +Y FTTL P + ++N ++ IAD
Sbjct: 154 LELMLLADVGTLGMPNVGKSTLVTNISGAKTKISDYPFTTLHPVLGSVNIQKNKKFIIAD 213
Query: 186 LPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDV 287
+PGII+GA GLG FLKH+ER KLLL +ID+
Sbjct: 214 IPGIIKGASYGAGLGIRFLKHLERCKLLLHIIDL 247
>sp|P38860|MTG2_YEAST Mitochondrial GTPase 2
Length = 499
Score = 105 bits (261), Expect = 4e-23
Identities = 54/124 (43%), Positives = 83/124 (66%), Gaps = 1/124 (0%)
Frame = +3
Query: 3 VINLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQVATINYPDHRSI-TI 179
+ LK IAD+GL+G PNAGKS++LNKIS A KIG++ FTTLSP + T++ + + T+
Sbjct: 333 LFELKSIADLGLIGLPNAGKSTILNKISNAKPKIGHWQFTTLSPTIGTVSLGFGQDVFTV 392
Query: 180 ADLPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDVYGFKLESKRFNSSYRSPFETILLL 359
AD+PGII+GA ++ G+G FL+H+ER+ +FV+D+ S ++P + LL
Sbjct: 393 ADIPGIIQGASLDKGMGLEFLRHIERSNGWVFVLDL------------SNKNPLNDLQLL 440
Query: 360 NQEL 371
+E+
Sbjct: 441 IEEV 444
>sp|P46584|Y2357_CORGL Probable GTP-binding protein Cgl2357/cg2589
Length = 501
Score = 104 bits (259), Expect = 8e-23
Identities = 49/94 (52%), Positives = 69/94 (73%)
Frame = +3
Query: 3 VINLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQVATINYPDHRSITIA 182
++ LK +AD+GLVGFP+AGKSSL++ +S A KIG+Y FTTL P + +N H + T+A
Sbjct: 153 ILELKSMADVGLVGFPSAGKSSLISVMSAAKPKIGDYPFTTLQPNLGVVNV-GHETFTMA 211
Query: 183 DLPGIIEGAHVNIGLGFHFLKHVERTKLLLFVID 284
D+PG+I GA GLG FL+H+ERT +L+ V+D
Sbjct: 212 DVPGLIPGASEGKGLGLDFLRHIERTSVLVHVVD 245
>sp|Q8K9G1|Y376_BUCAP Hypothetical GTP-binding protein BUsg376
Length = 333
Score = 101 bits (252), Expect = 5e-22
Identities = 53/122 (43%), Positives = 77/122 (63%)
Frame = +3
Query: 6 INLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQVATINYPDHRSITIAD 185
+ L LIAD+G +G PNAGKS+L+ ISGA KI NY FTTL+P + ++N + + IAD
Sbjct: 154 LELILIADVGTLGMPNAGKSTLVKSISGAKTKIANYPFTTLNPVLGSVN-TEGKKFIIAD 212
Query: 186 LPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDVYGFKLESKRFNSSYRSPFETILLLNQ 365
+PGI++ A GLG FLKH+ER K+LL ++D+ + + +P E I ++
Sbjct: 213 IPGIMQNASQGFGLGVRFLKHLERCKILLHIVDL---------CPTDHSNPVENIRIILN 263
Query: 366 EL 371
EL
Sbjct: 264 EL 265
>sp|P42641|YHBZ_ECOLI Hypothetical GTP-binding protein yhbZ
Length = 390
Score = 100 bits (249), Expect = 1e-21
Identities = 43/95 (45%), Positives = 66/95 (69%)
Frame = +3
Query: 3 VINLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQVATINYPDHRSITIA 182
++ L L+AD+G++G PNAGKS+ + +S A K+ +Y FTTL P + + + +S +A
Sbjct: 153 LLELMLLADVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDNEKSFVVA 212
Query: 183 DLPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDV 287
D+PG+IEGA GLG FLKH+ER ++LL +ID+
Sbjct: 213 DIPGLIEGAAEGAGLGIRFLKHLERCRVLLHLIDI 247
>sp|Q89AE7|Y352_BUCBP Hypothetical GTP-binding protein bbp352
Length = 338
Score = 100 bits (249), Expect = 1e-21
Identities = 48/94 (51%), Positives = 63/94 (67%)
Frame = +3
Query: 6 INLKLIADIGLVGFPNAGKSSLLNKISGASVKIGNYSFTTLSPQVATINYPDHRSITIAD 185
+ L LIA +G +G PN+GKS+L+ IS A KI NY FTTL P + T+ IAD
Sbjct: 154 LELILIAHVGTLGLPNSGKSTLVRNISNAKTKIANYPFTTLKPVLGTVKINHKEFFVIAD 213
Query: 186 LPGIIEGAHVNIGLGFHFLKHVERTKLLLFVIDV 287
+PG+I+GA IGLG+ FLKH+ER LLL +ID+
Sbjct: 214 IPGLIQGASHGIGLGYQFLKHLERCHLLLHIIDI 247
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,093,135
Number of Sequences: 369166
Number of extensions: 710718
Number of successful extensions: 3018
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2988
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1809034200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)