Planaria EST Database

DrC_00468

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00468
         (835 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O69060|HTXA_PSEST  Probable alpha-ketoglutarate-dependent...    53   1e-06
sp|O18778|PAHX_BOVIN  Phytanoyl-CoA dioxygenase, peroxisomal...    47   8e-05
sp|Q6QUY7|ECTD_STRCH  Ectoine hydroxylase                          44   7e-04
sp|O14832|PAHX_HUMAN  Phytanoyl-CoA dioxygenase, peroxisomal...    43   0.001
sp|P57093|PAHX_RAT  Phytanoyl-CoA dioxygenase, peroxisomal p...    42   0.002
sp|O62515|PAHX_CAEEL  Probable phytanoyl-CoA dioxygenase (Ph...    40   0.008
sp|P67772|Y0D3_MYCTU  Hypothetical protein Rv3633/MT3735 >gi...    39   0.023
sp|O35386|PAHX_MOUSE  Phytanoyl-CoA dioxygenase, peroxisomal...    37   0.051

>sp|O69060|HTXA_PSEST Probable alpha-ketoglutarate-dependent hypophosphite dioxygenase
          Length = 286

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 7/158 (4%)
 Frame = +1

Query: 223 PTLYVEHLNEGPIHRKTEFLAKYIFGDDMIEDFNFLITKEPFKDVPTFWHSDESYWLDLP 402
           P LY + ++      K   L ++  G++ I   N  I  +P    P  WH D +++    
Sbjct: 69  PHLYFDAIDSLVRSEKIVDLLRHFLGEN-IRLHNSKINFKPPSGAPVQWHQDWAFYPHTN 127

Query: 403 DKRAMSFWVALDKTYVENGCMWFVPQSHKEPLRPHRKYHPDKHIRTCD-------ADESE 561
           D   ++  + LD+T  +NG M  +P SHK  +  HR     +              D +E
Sbjct: 128 DD-FLTLGIFLDETSEKNGAMACLPGSHKGKVYDHRNVETGEFCHAISRSNWDEALDPTE 186

Query: 562 GVPVPLQPGELTGHGGRTLHYSRGNSTPDRRRGFVVNY 675
           G  +    G +T H  RTLH S  N +  RRR  ++ Y
Sbjct: 187 GELLTGPVGTVTLHHVRTLHGSGPNHSTIRRRFLLIGY 224

>sp|O18778|PAHX_BOVIN Phytanoyl-CoA dioxygenase, peroxisomal precursor (Phytanoyl-CoA
           alpha-hydroxylase) (PhyH) (Phytanic acid oxidase)
          Length = 337

 Score = 46.6 bits (109), Expect = 8e-05
 Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 8/164 (4%)
 Frame = +1

Query: 40  WDKDGFIHVKNILNDKDIKIYSDVYDDFLSGKIDASIHRHDLGNINDSTKNKVENICQIM 219
           ++++GF+ +KN+++D DI+ + + ++     ++        L  + D T  K E +    
Sbjct: 61  YEENGFLVIKNLVSDADIQRFRNEFERICRKEVKPL----GLSVMRDVTITKSEYVPSEK 116

Query: 220 WPTLYVEHLNEGPIHRKTEF--LAKYI---FGDDMIEDFNFLITKEPFKDVPTF---WHS 375
             +   +   +  + R      + KY+    G +++     LI K P     T     H 
Sbjct: 117 VVSKVQDFQEDEELFRYCTLPEILKYVECFTGPNIMAMHTXLINKPPDSXKKTSRHPLHQ 176

Query: 376 DESYWLDLPDKRAMSFWVALDKTYVENGCMWFVPQSHKEPLRPH 507
           D  Y+   P    +  W A++     NGC+  +P +HK PL+PH
Sbjct: 177 DLHYFPFRPSNSIVCAWTAMEHIDRNNGCLVVLPGTHKGPLQPH 220

>sp|Q6QUY7|ECTD_STRCH Ectoine hydroxylase
          Length = 297

 Score = 43.5 bits (101), Expect = 7e-04
 Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 4/154 (2%)
 Frame = +1

Query: 40  WDKDGFIHVKNILNDKDIKIYSDVYDDFLSGKIDASIHRHDLGNINDSTKNKVENICQIM 219
           ++ DGF+ V  ++   ++ +Y    +  +S   D ++ R D  +I +     V ++ ++ 
Sbjct: 45  YEHDGFLTVDQLIAPDEVAVYQAELNRLIS---DPAV-RADERSIVEKQSQNVRSVFEVH 100

Query: 220 WPTLYVEHLNEGPIH-RKTEFLAKYIFGDDMIEDFNFLITKEPFKDVPTFWHSDESYWL- 393
                +  +  G +   +    A+ I G D+    + +  K  F     +WHSD   W  
Sbjct: 101 ----RISEVFAGLVRDERVVGRARQILGSDVYVHQSRINVKPGFGATGFYWHSDFETWHA 156

Query: 394 --DLPDKRAMSFWVALDKTYVENGCMWFVPQSHK 489
              LP+ R +S  +AL + +  NG +  +P SHK
Sbjct: 157 EDGLPNMRTVSVSIALTENFDTNGGLMIMPGSHK 190

>sp|O14832|PAHX_HUMAN Phytanoyl-CoA dioxygenase, peroxisomal precursor (Phytanoyl-CoA
           alpha-hydroxylase) (PhyH) (Phytanic acid oxidase)
          Length = 338

 Score = 43.1 bits (100), Expect = 0.001
 Identities = 37/164 (22%), Positives = 70/164 (42%), Gaps = 8/164 (4%)
 Frame = +1

Query: 40  WDKDGFIHVKNILNDKDIKIYSDVYDDFLSGKIDASIHRHDLGNINDSTKNKVENICQIM 219
           ++++GF+ +KN++ D DI+ + + ++     ++        L  + D T +K E      
Sbjct: 61  YEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPL----GLTVMRDVTISKSEYAPSEK 116

Query: 220 WPTLYVEHLNEGPIHRKTEF--LAKYI---FGDDMIEDFNFLITKEPFKDVPTF---WHS 375
             T   +   +  + R      + KY+    G +++     LI K P     T     H 
Sbjct: 117 MITKVQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTSRHPLHQ 176

Query: 376 DESYWLDLPDKRAMSFWVALDKTYVENGCMWFVPQSHKEPLRPH 507
           D  Y+   P    +  W A++     NGC+  +P +HK  L+PH
Sbjct: 177 DLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPH 220

>sp|P57093|PAHX_RAT Phytanoyl-CoA dioxygenase, peroxisomal precursor (Phytanoyl-CoA
           alpha-hydroxylase) (PhyH) (Phytanic acid oxidase)
          Length = 338

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 51/242 (21%), Positives = 93/242 (38%), Gaps = 30/242 (12%)
 Frame = +1

Query: 40  WDKDGFIHVKNILNDKDIKIYSDVYDDFLSGKI---------DASIHRHDLG-------N 171
           ++++GF+ +KN+++D DI+ +   ++     ++         D +I +            
Sbjct: 61  YEENGFLVIKNLVSDDDIQRFRAEFERICRKEVKPPGMTVMKDVAIAKQGYAPSERVVTK 120

Query: 172 INDSTKNK-VENICQIMWPTLYVEHLNEGPIHRKTEFLAKYIFGDDMIEDFNFLITKEPF 348
           I D  +N+ +   C +     YVE                   G +++     LI K P 
Sbjct: 121 IQDFQQNEELFRYCALPQIVKYVECFT----------------GPNIMAMHTMLINKPPD 164

Query: 349 KDVPTF---WHSDESYWLDLPDKRAMSFWVALDKTYVENGCMWFVPQSHKEPLRPH---- 507
               T     H D  ++   P    +  W A++     NGC+  +P +HK PL+PH    
Sbjct: 165 SGKKTSRHPLHQDLHFFPFRPSNLIVCAWTAMEHIDRNNGCLVVLPGTHKGPLKPHDYPK 224

Query: 508 ------RKYHPDKHIRTCDADESEGVPVPLQPGELTGHGGRTLHYSRGNSTPDRRRGFVV 669
                 + YH    I+  D D S  V + ++ G+        +H S  N T   R+    
Sbjct: 225 WEGGVNKMYH---GIQDYDPD-SPRVHLVMEKGDTVFFHPLLIHGSGRNRTQGFRKAISC 280

Query: 670 NY 675
           +Y
Sbjct: 281 HY 282

>sp|O62515|PAHX_CAEEL Probable phytanoyl-CoA dioxygenase (Phytanoyl-CoA
           alpha-hydroxylase) (PhyH) (Phytanic acid oxidase)
          Length = 312

 Score = 40.0 bits (92), Expect = 0.008
 Identities = 49/235 (20%), Positives = 90/235 (38%), Gaps = 23/235 (9%)
 Frame = +1

Query: 40  WDKDGFIHVKNILNDKDIKIYSDVYDDFLSGKIDASIHR---HDLGNINDSTKNKVENIC 210
           ++K+G++ ++N +   ++  +   + D    K+ A  +     D+       K+  + I 
Sbjct: 24  YEKNGYLLIRNCVPQYELNRFRQRFQDICEKKVKAPENMTVMKDISIAKSEFKDGEKAIT 83

Query: 211 QIMW----PTLYVEHLNEGPIHRKTEFLAKYIFGD---DMIEDFNFLITKEPFKDVPTF- 366
           +I      P L+      G +      + K + G+   +++     LI K P     T  
Sbjct: 84  KIQDFADDPVLFEYCKYPGVVD-----VVKDLIGNPKSNLMAMHTMLINKPPDNGKLTSR 138

Query: 367 --WHSDESYWLDLPDKRAMSFWVALDKTYVENGCMWFVPQSHKEPLRPH----------R 510
              H D  Y+   P       W A++K    NGC+  VP +HK  L PH          +
Sbjct: 139 HPMHQDLQYFPFRPADFICCAWTAMEKITRANGCLVVVPGTHKGVLLPHEYPKWEGGVNK 198

Query: 511 KYHPDKHIRTCDADESEGVPVPLQPGELTGHGGRTLHYSRGNSTPDRRRGFVVNY 675
            YH  +   T     +  + V ++PG+        +H S  N T   R+    +Y
Sbjct: 199 AYHGIQDYDT----STPRIHVEMEPGDTVFFHPILIHGSGANRTEGFRKAISCHY 249

>sp|P67772|Y0D3_MYCTU Hypothetical protein Rv3633/MT3735
 sp|P67773|Y0F7_MYCBO Hypothetical protein Mb3657
          Length = 291

 Score = 38.5 bits (88), Expect = 0.023
 Identities = 34/141 (24%), Positives = 52/141 (36%), Gaps = 1/141 (0%)
 Frame = +1

Query: 256 PIHRKTEFLAKYIFGDDMIEDFNFLITKEPFKDVPTFWHSDESYWLDLPDKRAM-SFWVA 432
           P+H K   + + + G D +  +     + P          DE Y L  P +  + +  +A
Sbjct: 91  PVHPKLLPVIEGVLGRDCLLSWCMTSNQLPGAVAQRLHCDDEMYPLPRPHQPLLCNALIA 150

Query: 433 LDKTYVENGCMWFVPQSHKEPLRPHRKYHPDKHIRTCDADESEGVPVPLQPGELTGHGGR 612
           L     +NG    VP SH+ P RP   Y              EG PV +  G+     G 
Sbjct: 151 LCDFTADNGATQVVPGSHRWPERPSPPY-------------PEGKPVEINAGDALIWNGS 197

Query: 613 TLHYSRGNSTPDRRRGFVVNY 675
             H +  N T   R    +N+
Sbjct: 198 LWHTAAANRTDAPRPALTINF 218

>sp|O35386|PAHX_MOUSE Phytanoyl-CoA dioxygenase, peroxisomal precursor (Phytanoyl-CoA
           alpha-hydroxylase) (PhyH) (Phytanic acid oxidase) (Lupus
           nephritis-associated peptide 1)
          Length = 338

 Score = 37.4 bits (85), Expect = 0.051
 Identities = 34/168 (20%), Positives = 72/168 (42%), Gaps = 12/168 (7%)
 Frame = +1

Query: 40  WDKDGFIHVKNILNDKDIKIYSDVYDDFLSGKI---------DASIHRHDLGNINDSTKN 192
           ++++GF+ +KN+++D DI+ +   ++     ++         D ++ + D    +D   +
Sbjct: 61  YEENGFLVIKNLVSDDDIQRFRAEFERICREEVKPPGIVIMRDVALAKQDYMP-SDRMVS 119

Query: 193 KVENICQIMWPTLYVEHLNEGPIHRKTEFLAKYIFGDDMIEDFNFLITKEPFKDVPTF-- 366
           K+++  +        E L    +  +     +   G +++     LI K P     T   
Sbjct: 120 KIQDFQED-------EELFRYCLLPEILKYVECFTGPNIMALHGMLINKPPDVGKKTSRH 172

Query: 367 -WHSDESYWLDLPDKRAMSFWVALDKTYVENGCMWFVPQSHKEPLRPH 507
             H D  Y+   P    +  W A++     NGC+  +P +HK  L+PH
Sbjct: 173 PLHQDLHYFPFRPSNLIVCAWTAMEHIDRNNGCLVVLPGTHKGTLKPH 220

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,489,347
Number of Sequences: 369166
Number of extensions: 2132858
Number of successful extensions: 5234
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5226
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8100769320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00468

  1. Dr_sW_012_I02
  2. Dr_sW_017_K07