Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_K07
(494 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O69060|HTXA_PSEST Probable alpha-ketoglutarate-dependent... 48 1e-05
sp|O62515|PAHX_CAEEL Probable phytanoyl-CoA dioxygenase (Ph... 39 0.005
sp|P57093|PAHX_RAT Phytanoyl-CoA dioxygenase, peroxisomal p... 39 0.007
sp|O18778|PAHX_BOVIN Phytanoyl-CoA dioxygenase, peroxisomal... 39 0.009
sp|O14832|PAHX_HUMAN Phytanoyl-CoA dioxygenase, peroxisomal... 35 0.074
sp|O35386|PAHX_MOUSE Phytanoyl-CoA dioxygenase, peroxisomal... 35 0.074
sp|P67772|Y0D3_MYCTU Hypothetical protein Rv3633/MT3735 >gi... 35 0.074
sp|Q6QUY7|ECTD_STRCH Ectoine hydroxylase 35 0.074
sp|Q8WY21|SORC1_HUMAN VPS10 domain-containing receptor SorC... 30 4.1
sp|P47784|RNAS2_PONPY Nonsecretory ribonuclease precursor (... 29 5.3
>sp|O69060|HTXA_PSEST Probable alpha-ketoglutarate-dependent hypophosphite dioxygenase
Length = 286
Score = 48.1 bits (113), Expect = 1e-05
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Frame = +3
Query: 9 ITKEPFKDVPTFWHSDESYWLDLPDKRAMSFWVALDKTYVENGCMWFVPQSHKEPLRPHR 188
I +P P WH D +++ D ++ + LD+T +NG M +P SHK + HR
Sbjct: 104 INFKPPSGAPVQWHQDWAFYPHTNDD-FLTLGIFLDETSEKNGAMACLPGSHKGKVYDHR 162
Query: 189 KYHPDKHIRTCD-------ADESEGVPVPLQPGELTGHGGRTLHYSRGNSTPDRRRGFVV 347
+ D +EG + G +T H RTLH S N + RRR ++
Sbjct: 163 NVETGEFCHAISRSNWDEALDPTEGELLTGPVGTVTLHHVRTLHGSGPNHSTIRRRFLLI 222
Query: 348 NY 353
Y
Sbjct: 223 GY 224
>sp|O62515|PAHX_CAEEL Probable phytanoyl-CoA dioxygenase (Phytanoyl-CoA
alpha-hydroxylase) (PhyH) (Phytanic acid oxidase)
Length = 312
Score = 39.3 bits (90), Expect = 0.005
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 10/112 (8%)
Frame = +3
Query: 48 HSDESYWLDLPDKRAMSFWVALDKTYVENGCMWFVPQSHKEPLRPH----------RKYH 197
H D Y+ P W A++K NGC+ VP +HK L PH + YH
Sbjct: 142 HQDLQYFPFRPADFICCAWTAMEKITRANGCLVVVPGTHKGVLLPHEYPKWEGGVNKAYH 201
Query: 198 PDKHIRTCDADESEGVPVPLQPGELTGHGGRTLHYSRGNSTPDRRRGFVVNY 353
+ T + + V ++PG+ +H S N T R+ +Y
Sbjct: 202 GIQDYDT----STPRIHVEMEPGDTVFFHPILIHGSGANRTEGFRKAISCHY 249
>sp|P57093|PAHX_RAT Phytanoyl-CoA dioxygenase, peroxisomal precursor (Phytanoyl-CoA
alpha-hydroxylase) (PhyH) (Phytanic acid oxidase)
Length = 338
Score = 38.9 bits (89), Expect = 0.007
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 10/112 (8%)
Frame = +3
Query: 48 HSDESYWLDLPDKRAMSFWVALDKTYVENGCMWFVPQSHKEPLRPH----------RKYH 197
H D ++ P + W A++ NGC+ +P +HK PL+PH + YH
Sbjct: 175 HQDLHFFPFRPSNLIVCAWTAMEHIDRNNGCLVVLPGTHKGPLKPHDYPKWEGGVNKMYH 234
Query: 198 PDKHIRTCDADESEGVPVPLQPGELTGHGGRTLHYSRGNSTPDRRRGFVVNY 353
I+ D D S V + ++ G+ +H S N T R+ +Y
Sbjct: 235 ---GIQDYDPD-SPRVHLVMEKGDTVFFHPLLIHGSGRNRTQGFRKAISCHY 282
>sp|O18778|PAHX_BOVIN Phytanoyl-CoA dioxygenase, peroxisomal precursor (Phytanoyl-CoA
alpha-hydroxylase) (PhyH) (Phytanic acid oxidase)
Length = 337
Score = 38.5 bits (88), Expect = 0.009
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 48 HSDESYWLDLPDKRAMSFWVALDKTYVENGCMWFVPQSHKEPLRPH 185
H D Y+ P + W A++ NGC+ +P +HK PL+PH
Sbjct: 175 HQDLHYFPFRPSNSIVCAWTAMEHIDRNNGCLVVLPGTHKGPLQPH 220
>sp|O14832|PAHX_HUMAN Phytanoyl-CoA dioxygenase, peroxisomal precursor (Phytanoyl-CoA
alpha-hydroxylase) (PhyH) (Phytanic acid oxidase)
Length = 338
Score = 35.4 bits (80), Expect = 0.074
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 48 HSDESYWLDLPDKRAMSFWVALDKTYVENGCMWFVPQSHKEPLRPH 185
H D Y+ P + W A++ NGC+ +P +HK L+PH
Sbjct: 175 HQDLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPH 220
>sp|O35386|PAHX_MOUSE Phytanoyl-CoA dioxygenase, peroxisomal precursor (Phytanoyl-CoA
alpha-hydroxylase) (PhyH) (Phytanic acid oxidase) (Lupus
nephritis-associated peptide 1)
Length = 338
Score = 35.4 bits (80), Expect = 0.074
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 48 HSDESYWLDLPDKRAMSFWVALDKTYVENGCMWFVPQSHKEPLRPH 185
H D Y+ P + W A++ NGC+ +P +HK L+PH
Sbjct: 175 HQDLHYFPFRPSNLIVCAWTAMEHIDRNNGCLVVLPGTHKGTLKPH 220
>sp|P67772|Y0D3_MYCTU Hypothetical protein Rv3633/MT3735
sp|P67773|Y0F7_MYCBO Hypothetical protein Mb3657
Length = 291
Score = 35.4 bits (80), Expect = 0.074
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
Frame = +3
Query: 54 DESYWLDLPDKRAM-SFWVALDKTYVENGCMWFVPQSHKEPLRPHRKYHPDKHIRTCDAD 230
DE Y L P + + + +AL +NG VP SH+ P RP Y
Sbjct: 131 DEMYPLPRPHQPLLCNALIALCDFTADNGATQVVPGSHRWPERPSPPY------------ 178
Query: 231 ESEGVPVPLQPGELTGHGGRTLHYSRGNSTPDRRRGFVVNY 353
EG PV + G+ G H + N T R +N+
Sbjct: 179 -PEGKPVEINAGDALIWNGSLWHTAAANRTDAPRPALTINF 218
>sp|Q6QUY7|ECTD_STRCH Ectoine hydroxylase
Length = 297
Score = 35.4 bits (80), Expect = 0.074
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +3
Query: 42 FWHSDESYWL---DLPDKRAMSFWVALDKTYVENGCMWFVPQSHK 167
+WHSD W LP+ R +S +AL + + NG + +P SHK
Sbjct: 146 YWHSDFETWHAEDGLPNMRTVSVSIALTENFDTNGGLMIMPGSHK 190
>sp|Q8WY21|SORC1_HUMAN VPS10 domain-containing receptor SorCS1 precursor (hSorCS)
Length = 1168
Score = 29.6 bits (65), Expect = 4.1
Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 9/105 (8%)
Frame = +3
Query: 102 WVALDKTYVENGCMWFVPQSHKEPLRPH---RKYHPDKHIRTC------DADESEGVPVP 254
W + + V N W V S+KEP H R H TC +A+ ++ P
Sbjct: 306 WQLIQEGVVPNRFYWSVMGSNKEPDLVHLEARTVDGHSHYLTCRMQNCTEANRNQPFPGY 365
Query: 255 LQPGELTGHGGRTLHYSRGNSTPDRRRGFVVNYRPKAMVELERQK 389
+ P L HY T R + V+YR A +++ K
Sbjct: 366 IDPDSLIVQD----HYVFVQLTSGGRPHYYVSYRRNAFAQMKLPK 406
>sp|P47784|RNAS2_PONPY Nonsecretory ribonuclease precursor (Ribonuclease US)
(Eosinophil-derived neurotoxin) (RNase UpI-2)
(Ribonuclease 2) (RNase 2)
Length = 161
Score = 29.3 bits (64), Expect = 5.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 340 NPLRRSGVEFPRL*CNVLPP*PVNSPGCNGTGTPSD 233
N SGV+ P + CN+ P P N C TP++
Sbjct: 96 NNCHHSGVQVPLIHCNLTTPSPQNISNCRYAQTPAN 131
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,984,796
Number of Sequences: 369166
Number of extensions: 1360294
Number of successful extensions: 3138
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3137
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3069744620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)