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• EST
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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00452
         (1150 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P16356|RPB1_CAEEL  DNA-directed RNA polymerase II largest...    52   4e-06
sp|P35074|RPB1_CAEBR  DNA-directed RNA polymerase II largest...    50   9e-06
sp|P04052|RPB1_DROME  DNA-directed RNA polymerase II largest...    47   1e-04
sp|Q9M1G9|EXTN2_ARATH  Extensin-2 precursor (AtExt2) (Cell w...    45   3e-04
sp|P35084|RPB1_DICDI  DNA-directed RNA polymerase II largest...    42   0.003
sp|P08775|RPB1_MOUSE  DNA-directed RNA polymerase II largest...    42   0.003
sp|P24928|RPB1_HUMAN  DNA-directed RNA polymerase II largest...    42   0.003
sp|P11414|RPB1_CRIGR  DNA-directed RNA polymerase II largest...    42   0.003
sp|P18616|RPB1_ARATH  DNA-directed RNA polymerase II largest...    41   0.007
sp|P04050|RPB1_YEAST  DNA-directed RNA polymerase II largest...    39   0.021

>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II largest subunit
          Length = 1852

 Score = 51.6 bits (122), Expect = 4e-06
 Identities = 65/223 (29%), Positives = 78/223 (34%), Gaps = 7/223 (3%)
 Frame = +2

Query: 98   PIGAMYSSPGPQYMLPGLVGVTFHDPRSVHYKSPGWSFGLRHGKYQDDS---SPG-PCYF 265
            P+   YS   P Y          + P S  Y     S+      Y   S   SP  P Y 
Sbjct: 1607 PVSPSYSPTSPSYSPTS----PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYS 1662

Query: 266  PNSKLYRTGKDGSPQYSLYSRPKS-LSLDYIPGPGAYKPESTIKKVYSK-APEYPFGIRH 439
            P+S  Y      SP+YS  S   S  S  Y P    Y P S     YS  +P Y  G  +
Sbjct: 1663 PSSPSY---SPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSP---TYSPTSPSYESGGGY 1716

Query: 440  MERRTDDTPGPNVYS-VDPMLSRTVRSQKPSAPMISMSSRSKIGGFHEDLQKTPGPGTYK 616
                   +P    YS   P  S T     P++P  S SS +           TP   TY 
Sbjct: 1717 SPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTY----------TPSSPTYN 1766

Query: 617  VTDPGVFKSRYPMYSMTSRNPMPGDTTQKPGPGAYSAELVTFT 745
             T P  F S  P YS TS    P   +  P    YS    T+T
Sbjct: 1767 PTSPRGFSS--PQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYT 1807

 Score = 37.0 bits (84), Expect = 0.11
 Identities = 56/208 (26%), Positives = 70/208 (33%), Gaps = 24/208 (11%)
 Frame = +2

Query: 173  PRSVHYKSPGWSFGLRHGKYQDDSSPGPCYFPNSKLYRTGKDG------SPQYSLYSRPK 334
            PR+  Y   G S G+        S   P Y P S  Y            SP YS  S   
Sbjct: 1562 PRTPSYG--GMSPGVYSPSSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSY 1619

Query: 335  S-LSLDYIPGPGAYKPES-----TIKKVYSKAPEY-PFGIRHMERRTDDTPGPNVYS--- 484
            S  S  Y P   +Y P S     T       +P Y P    +       +P    YS   
Sbjct: 1620 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTS 1679

Query: 485  -----VDPMLSRTVRSQKPSAPMISMSSRS--KIGGFHEDLQK-TPGPGTYKVTDPGVFK 640
                   P  S T  +  P++P  S +S S    GG+     K +P   TY  T P  + 
Sbjct: 1680 PTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPS-YS 1738

Query: 641  SRYPMYSMTSRNPMPGDTTQKPGPGAYS 724
               P YS TS    P   T  P    Y+
Sbjct: 1739 PTSPQYSPTSPQYSPSSPTYTPSSPTYN 1766

>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II largest subunit
          Length = 1853

 Score = 50.4 bits (119), Expect = 9e-06
 Identities = 60/221 (27%), Positives = 76/221 (34%), Gaps = 9/221 (4%)
 Frame = +2

Query: 89   PRRPIGAM------YSSPGPQYMLPGLVGVTFHDPRSVHYKSPGWSFGLRHGKYQDDSSP 250
            P  P+GA+      Y    P    P   G +   P   HY     S+      +   S  
Sbjct: 1556 PGDPLGALSPRTPAYGGMSPGVYSPASPGFSMTSP---HYSPTSPSYSPTSPAHHGQSPV 1612

Query: 251  GPCYFPNSKLYRTGKDGSPQYSLYSRPKS-LSLDYIPGPGAYKPESTIKKVYSKAPEY-P 424
             P Y P S  Y      SP YS  S   S  S  Y P   +Y P S      S  P Y P
Sbjct: 1613 SPSYSPTSPSY---SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--PSYSP 1667

Query: 425  FGIRHMERRTDDTPGPNVYS-VDPMLSRTVRSQKPSAPMISMSSRSKIGGFHEDLQKTPG 601
                +       +P    YS   P  S T  +  P++P  S +S S  G      + +P 
Sbjct: 1668 TSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPS 1727

Query: 602  PGTYKVTDPGVFKSRYPMYSMTSRNPMPGDTTQKPGPGAYS 724
              TY  T P  +    P YS TS    P   T  P    Y+
Sbjct: 1728 SPTYSPTSPS-YSPTSPQYSPTSPQYSPSSPTYTPSSPTYN 1767

 Score = 48.9 bits (115), Expect = 3e-05
 Identities = 63/229 (27%), Positives = 76/229 (33%), Gaps = 4/229 (1%)
 Frame = +2

Query: 71   TSAYNVPRRPIGAMYSSPGPQYMLPGLVGVTFHDPRSVHYKSPGWSFGLRHGKYQDDSSP 250
            TS  +  + P+   YS   P Y          + P S  Y     S+      Y   S  
Sbjct: 1602 TSPAHHGQSPVSPSYSPTSPSYSPTS----PSYSPTSPSYSPTSPSYSPTSPSYSPTS-- 1655

Query: 251  GPCYFPNSKLYRTGKDGSPQYSLYS-RPKSLSLDYIPGPGAYKPESTIKKVYSK--APEY 421
             P Y P S  Y      SP YS  S R    S  Y P    Y P S      S   +P  
Sbjct: 1656 -PSYSPTSPSY---SPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTS 1711

Query: 422  PFGIRHMERRTDDTPGPNVYS-VDPMLSRTVRSQKPSAPMISMSSRSKIGGFHEDLQKTP 598
            P    +       +P    YS   P  S T     P++P  S SS +           TP
Sbjct: 1712 PSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTY----------TP 1761

Query: 599  GPGTYKVTDPGVFKSRYPMYSMTSRNPMPGDTTQKPGPGAYSAELVTFT 745
               TY  T P  F S  P YS TS    P   +  P    YS    T+T
Sbjct: 1762 SSPTYNPTSPRAFSS--PQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYT 1808

>sp|P04052|RPB1_DROME DNA-directed RNA polymerase II largest subunit
          Length = 1887

 Score = 46.6 bits (109), Expect = 1e-04
 Identities = 63/235 (26%), Positives = 87/235 (37%), Gaps = 2/235 (0%)
 Frame = +2

Query: 89   PRRPIGAMYSSPGPQYMLPGLVGVTFHDPRSVHYKSPGWSFGLRHGKYQDDSSPGPCYFP 268
            P  P G+  SSPGP  M P         P S    SP ++     G   + S   P Y P
Sbjct: 1551 PAHP-GSSPSSPGPS-MSPYFPASPSVSP-SYSPTSPNYTASSPGGASPNYSPSSPNYSP 1607

Query: 269  NSKLYRTGKDGSPQY-SLYSRPKSLSLDYIPGPGAYKPESTIKKVYSKAPEYPFGIRHME 445
             S LY      SP+Y S        S  Y P    Y P S         P Y   ++   
Sbjct: 1608 TSPLY-----ASPRYASTTPNFNPQSTGYSPSSSGYSPTS---------PVYSPTVQFQS 1653

Query: 446  RRTDDTPGPNVYSVDPMLSRTVRSQKPSAPMISMSSRSKIGGFHEDLQKTPGPGTYKVTD 625
              +    G N+YS     S +  +  P++P  S +S S           +P   +Y  T 
Sbjct: 1654 SPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSY----------SPSSPSYSPTS 1703

Query: 626  PGVFKSRYPMYSMTSRNPMPGDTTQKPGPGAYSAELVTFTRPGAPKFT-FGIRHS 787
            P  +    P YS TS N  P   +  P    YSA       P +P ++  G+++S
Sbjct: 1704 P-CYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSAS--PQYSPASPAYSQTGVKYS 1755

 Score = 41.6 bits (96), Expect = 0.004
 Identities = 62/245 (25%), Positives = 80/245 (32%), Gaps = 24/245 (9%)
 Frame = +2

Query: 104  GAMYSSPGPQYMLPGLVGVTFHDPRSVHYKSPGWSFGLRHGKYQDDSSPGPCYFPNSKLY 283
            G+   SPG  Y        + + P S  Y     S+      Y   S   PCY P S  Y
Sbjct: 1661 GSNIYSPGNAYSPSS----SNYSPNSPSYSPTSPSYSPSSPSYSPTS---PCYSPTSPSY 1713

Query: 284  RTGKDG----SPQYSLYSRPKSLSLDYIPGPGAYKPE----STIKKVYSK-APEYPFGIR 436
                      +P YS  S   S S  Y P   AY       S     YS  +P Y     
Sbjct: 1714 SPTSPNYTPVTPSYSPTSPNYSASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSY----- 1768

Query: 437  HMERRTDDTPGPNVYSV-DPMLSRTVRSQKPSAPMISMSSRSKIGGFHEDLQKTPGPGTY 613
                  D +PG   Y+   P  S       P++P+ S SS           Q +P   TY
Sbjct: 1769 ------DGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQH----SPSNQYSPTGSTY 1818

Query: 614  KVTDPGV-------------FKSRYPMYSMTSRNPMPGDTTQKP-GPGAYSAELVTFTRP 751
              T P               +    P Y+ T+RN  P      P  P  YS     ++ P
Sbjct: 1819 SATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPTAPSHYSPTSPAYS-P 1877

Query: 752  GAPKF 766
             +P F
Sbjct: 1878 SSPTF 1882

>sp|Q9M1G9|EXTN2_ARATH Extensin-2 precursor (AtExt2) (Cell wall hydroxyproline-rich
            glycoprotein 1) (HRGP1)
          Length = 743

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 60/230 (26%), Positives = 78/230 (33%), Gaps = 10/230 (4%)
 Frame = +2

Query: 113  YSSPGPQYMLPGLVGVTFHDPRSVHYKSPGWSFGLRHGKYQDDSSPGPCYFPNSKLYRTG 292
            Y SP P Y+       T+     V+YKSP          Y   S P P Y P+ K+Y   
Sbjct: 393  YKSPPPPYVYSSPPPPTYSPSPKVYYKSP-------PPPYVYSSPPPPYYSPSPKVYY-- 443

Query: 293  KDGSPQYSLYSRPKSLSLDYIPGPGAYKPESTIKKVYSKAPEYPFGIRHMERRTDDTPGP 472
            K   P Y   S P      Y P P  Y        VYS  P  P+     +      P P
Sbjct: 444  KSPPPPYVYSSPPPPY---YSPSPKVYYKSPPPPYVYSSPPP-PYYSPSPKVYYKSPPPP 499

Query: 473  NVYSVDP----MLSRTVRSQKPSAPMISMSSRSKIGGFHEDLQ-KTPGPGTYKVTDPGVF 637
             VYS  P      S  V  + P  P +  S           +  K+P P       P V+
Sbjct: 500  YVYSSPPPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVHYKSPPP-------PYVY 552

Query: 638  KSRYPMYSMTS-----RNPMPGDTTQKPGPGAYSAELVTFTRPGAPKFTF 772
             S  P Y   S     ++P P      P P  YS     + +   P + +
Sbjct: 553  SSPPPPYYSPSPKVHYKSPPPPYVYNSPPPPYYSPSPKVYYKSPPPPYVY 602

 Score = 42.0 bits (97), Expect = 0.003
 Identities = 58/227 (25%), Positives = 77/227 (33%), Gaps = 7/227 (3%)
 Frame = +2

Query: 113 YSSPGPQYMLPGLVGVTFHDPRSVHYKSPGWSFGLRHGKYQDDSSPGPCYFPNSKLYRTG 292
           Y SP P Y+       T+     V YKSP          Y   S P P Y P+ K+    
Sbjct: 343 YKSPPPPYVYSSPPPPTYSPSPKVDYKSP-------PPPYVYSSPPPPYYSPSPKV--EY 393

Query: 293 KDGSPQYSLYSRPKSLSLDYIPGPGAYKPESTIKKVYSKAPEYPFGIRHMERRTDDTPGP 472
           K   P Y +YS P          P  Y P     KVY K+P  P+           +P P
Sbjct: 394 KSPPPPY-VYSSPP---------PPTYSPS---PKVYYKSPPPPY--------VYSSPPP 432

Query: 473 NVYSVDPMLSRTVRSQKPSAPMISMSSRSKIGGFHEDLQKTPGPGTYKVTDPG--VFKSR 646
             YS  P     V  + P  P +  S              +P P  Y  + P   V+ S 
Sbjct: 433 PYYSPSP----KVYYKSPPPPYVYSSPPPP--------YYSPSPKVYYKSPPPPYVYSSP 480

Query: 647 YPMYSMTS-----RNPMPGDTTQKPGPGAYSAELVTFTRPGAPKFTF 772
            P Y   S     ++P P      P P  YS     + +   P + +
Sbjct: 481 PPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVYYKSPPPPYVY 527

 Score = 41.2 bits (95), Expect = 0.006
 Identities = 62/248 (25%), Positives = 83/248 (33%), Gaps = 17/248 (6%)
 Frame = +2

Query: 80  YNVPRRPIGAMYSSPGPQYMLPGLVGVTFHDPRSVHYKSPGWSFGLRHGKYQDDSSPGPC 259
           Y  P  P   +YSSP P Y  P            V YKSP          Y   S P P 
Sbjct: 218 YKSPPPPY--VYSSPPPPYYSPS---------PKVDYKSPP-------PPYVYSSPPPPY 259

Query: 260 YFPNSKLYRTGKDGSPQYSLYSRP------KSLSLDYIPGPGAYKPESTIKKVYSKAPEY 421
           Y P+ K+    K   P Y +YS P       S  +DY   P  Y   S     YS +P+ 
Sbjct: 260 YSPSPKV--DYKSPPPPY-VYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKV 316

Query: 422 PFGIRHMERRTDDTPGPNVYSVDP----MLSRTVRSQKPSAPMI-------SMSSRSKIG 568
            +            P P VYS  P      S  V  + P  P +       + S   K+ 
Sbjct: 317 DY---------KSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPTYSPSPKV- 366

Query: 569 GFHEDLQKTPGPGTYKVTDPGVFKSRYPMYSMTSRNPMPGDTTQKPGPGAYSAELVTFTR 748
               D +  P P  Y    P  +    P   +  ++P P      P P  YS     + +
Sbjct: 367 ----DYKSPPPPYVYSSPPPPYYS---PSPKVEYKSPPPPYVYSSPPPPTYSPSPKVYYK 419

Query: 749 PGAPKFTF 772
              P + +
Sbjct: 420 SPPPPYVY 427

 Score = 39.7 bits (91), Expect = 0.016
 Identities = 56/222 (25%), Positives = 72/222 (32%), Gaps = 6/222 (2%)
 Frame = +2

Query: 113 YSSPGPQYMLPGLVGVTFHDPRSVHYKSPGWSFGLRHGKYQDDSSPGPCYFPNSKLYRTG 292
           Y SP P Y+       T+     V YKSP          Y   S P P Y P+ K+    
Sbjct: 68  YKSPPPPYVYSSPPPPTYSPSPKVDYKSP-------PPPYVYSSPPPPYYSPSPKV--DY 118

Query: 293 KDGSPQYSLYSRP-----KSLSLDYIPGPGAYKPESTIKKVYSKAPEYPFGIRHMERRTD 457
           K   P Y   S P      S  +DY   P  Y   S     YS +P+  +          
Sbjct: 119 KSPPPPYVYNSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVEY---------K 169

Query: 458 DTPGPNVYSVDPMLSRTVRSQKPSAPMISMSSRSKIGGFHEDLQKTPGPGTYKVTDPGVF 637
             P P VYS             P  P  S S +        D +  P P  Y    P  +
Sbjct: 170 SPPPPYVYS------------SPPPPYYSPSPK-------VDYKSPPPPYVYSSPPPPYY 210

Query: 638 KSRYPMYSMTSRNPMPGDTTQKPGPGAYS-AELVTFTRPGAP 760
               P   +  ++P P      P P  YS +  V +  P  P
Sbjct: 211 S---PSPKVEYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPP 249

 Score = 39.3 bits (90), Expect = 0.021
 Identities = 56/204 (27%), Positives = 69/204 (33%)
 Frame = +2

Query: 113  YSSPGPQYMLPGLVGVTFHDPRSVHYKSPGWSFGLRHGKYQDDSSPGPCYFPNSKLYRTG 292
            Y SP P Y+        +     V+YKSP          Y   S P P Y P+ K+Y   
Sbjct: 568  YKSPPPPYVYNSPPPPYYSPSPKVYYKSPP-------PPYVYSSPPPPYYSPSPKVYY-- 618

Query: 293  KDGSPQYSLYSRPKSLSLDYIPGPGAYKPESTIKKVYSKAPEYPFGIRHMERRTDDTPGP 472
            K   P Y +YS P          P  Y P     KVY K+P  P+           +P P
Sbjct: 619  KSPPPPY-VYSSPP---------PPYYSPS---PKVYYKSPPPPY----------YSPSP 655

Query: 473  NVYSVDPMLSRTVRSQKPSAPMISMSSRSKIGGFHEDLQKTPGPGTYKVTDPGVFKSRYP 652
             VY   P     V    P  P  S S +               P  Y    P V+    P
Sbjct: 656  KVYYKSPPHPH-VCVCPPPPPCYSPSPKVVYKSPPPPYVYNSPPPPYYSPSPKVYYKSPP 714

Query: 653  MYSMTSRNPMPGDTTQKPGPGAYS 724
              S  S  P P    + P P +YS
Sbjct: 715  PPSYYS--PSPKVEYKSPPPPSYS 736

 Score = 35.8 bits (81), Expect = 0.24
 Identities = 46/177 (25%), Positives = 62/177 (35%), Gaps = 16/177 (9%)
 Frame = +2

Query: 80   YNVPRRPIGA-----MYSSPGPQYMLPGLVGVTFHDPRSVHYKSPGWSFGLRHGKYQDDS 244
            YN P  P  +      Y SP P Y+        +     V+YKSP          Y   S
Sbjct: 577  YNSPPPPYYSPSPKVYYKSPPPPYVYSSPPPPYYSPSPKVYYKSP-------PPPYVYSS 629

Query: 245  SPGPCYFPNSKLYRTGK-----DGSPQYSLYSRPKSLSLDYIPGPGAYKPESTIKKVYSK 409
             P P Y P+ K+Y           SP+    S P        P P  Y P     KV  K
Sbjct: 630  PPPPYYSPSPKVYYKSPPPPYYSPSPKVYYKSPPHPHVCVCPPPPPCYSPS---PKVVYK 686

Query: 410  APEYPFGIRHMERRTDDTPGPNVYSVDP------MLSRTVRSQKPSAPMISMSSRSK 562
            +P  P+ + +       +P P VY   P        S  V  + P  P  S S +++
Sbjct: 687  SPPPPY-VYNSPPPPYYSPSPKVYYKSPPPPSYYSPSPKVEYKSPPPPSYSPSPKTE 742

>sp|P35084|RPB1_DICDI DNA-directed RNA polymerase II largest subunit
          Length = 902

 Score = 42.4 bits (98), Expect = 0.003
 Identities = 52/196 (26%), Positives = 69/196 (35%), Gaps = 12/196 (6%)
 Frame = +2

Query: 194  SPGWSFGLRHGKYQDDSSPGPCYFPNSKLYRTGKDG----SPQYSLYSRPKS-LSLDYIP 358
            SPG++    +G         P Y P S  Y          SP YS  S   S  S  Y P
Sbjct: 706  SPGYNANKSYGSSYQYFPQSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 765

Query: 359  GPGAYKPES-----TIKKVYSKAPEY-PFGIRHMERRTDDTPGPNVYS-VDPMLSRTVRS 517
               +Y P S     T       +P Y P    +       +P    YS   P  S T  S
Sbjct: 766  TSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 825

Query: 518  QKPSAPMISMSSRSKIGGFHEDLQKTPGPGTYKVTDPGVFKSRYPMYSMTSRNPMPGDTT 697
              P++P  S +S S           +P   +Y  T P  +    P YS +S +  P   +
Sbjct: 826  YSPTSPSYSPTSPSY----------SPTSPSYSPTSPS-YSPTSPSYSPSSPSYSPSSPS 874

Query: 698  QKPGPGAYSAELVTFT 745
              P   +YS    TFT
Sbjct: 875  YSPSSPSYSPSSPTFT 890

>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II largest subunit (RPB1)
          Length = 1970

 Score = 42.0 bits (97), Expect = 0.003
 Identities = 65/246 (26%), Positives = 87/246 (35%), Gaps = 13/246 (5%)
 Frame = +2

Query: 71   TSAYNVPRRPIGAMYSSPGPQYMLPGLVGVT-FHDPRSVHYKSPGWSFGLRHGKYQDDS- 244
            TS    PR P G    SP      P     +  + P S +Y     S+      Y   S 
Sbjct: 1596 TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSP 1655

Query: 245  --SP-GPCYFPNSKLYRTGKDGSPQYSLYSRPKS-LSLDYIPGPGAYKPES-----TIKK 397
              SP  P Y P S  Y      SP YS  S   S  S  Y P   +Y P S     T   
Sbjct: 1656 SYSPTSPSYSPTSPSY---SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1712

Query: 398  VYSKAPEY-PFGIRHMERRTDDTPGPNVYS-VDPMLSRTVRSQKPSAPMISMSSRSKIGG 571
                +P Y P    +       +P    YS   P  S T  +  P++P  S +S S    
Sbjct: 1713 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSY--- 1769

Query: 572  FHEDLQKTPGPGTYKVTDPGVFKSRYPMYSMTSRNPMPGDTTQKPGPGAYSAELVTFTRP 751
                   +P    Y  T P  +    P YS TS +  P   +  P    Y+ +  T+T P
Sbjct: 1770 -------SPTSPNYTPTSPN-YSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYT-P 1820

Query: 752  GAPKFT 769
             +P ++
Sbjct: 1821 SSPSYS 1826

>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II largest subunit (RPB1)
          Length = 1970

 Score = 42.0 bits (97), Expect = 0.003
 Identities = 65/246 (26%), Positives = 87/246 (35%), Gaps = 13/246 (5%)
 Frame = +2

Query: 71   TSAYNVPRRPIGAMYSSPGPQYMLPGLVGVT-FHDPRSVHYKSPGWSFGLRHGKYQDDS- 244
            TS    PR P G    SP      P     +  + P S +Y     S+      Y   S 
Sbjct: 1596 TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSP 1655

Query: 245  --SP-GPCYFPNSKLYRTGKDGSPQYSLYSRPKS-LSLDYIPGPGAYKPES-----TIKK 397
              SP  P Y P S  Y      SP YS  S   S  S  Y P   +Y P S     T   
Sbjct: 1656 SYSPTSPSYSPTSPSY---SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1712

Query: 398  VYSKAPEY-PFGIRHMERRTDDTPGPNVYS-VDPMLSRTVRSQKPSAPMISMSSRSKIGG 571
                +P Y P    +       +P    YS   P  S T  +  P++P  S +S S    
Sbjct: 1713 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSY--- 1769

Query: 572  FHEDLQKTPGPGTYKVTDPGVFKSRYPMYSMTSRNPMPGDTTQKPGPGAYSAELVTFTRP 751
                   +P    Y  T P  +    P YS TS +  P   +  P    Y+ +  T+T P
Sbjct: 1770 -------SPTSPNYTPTSPN-YSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYT-P 1820

Query: 752  GAPKFT 769
             +P ++
Sbjct: 1821 SSPSYS 1826

>sp|P11414|RPB1_CRIGR DNA-directed RNA polymerase II largest subunit (RPB1)
          Length = 467

 Score = 42.0 bits (97), Expect = 0.003
 Identities = 65/246 (26%), Positives = 87/246 (35%), Gaps = 13/246 (5%)
 Frame = +2

Query: 71  TSAYNVPRRPIGAMYSSPGPQYMLPGLVGVT-FHDPRSVHYKSPGWSFGLRHGKYQDDS- 244
           TS    PR P G    SP      P     +  + P S +Y     S+      Y   S 
Sbjct: 93  TSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSP 152

Query: 245 --SP-GPCYFPNSKLYRTGKDGSPQYSLYSRPKS-LSLDYIPGPGAYKPES-----TIKK 397
             SP  P Y P S  Y      SP YS  S   S  S  Y P   +Y P S     T   
Sbjct: 153 SYSPTSPSYSPTSPSY---SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 209

Query: 398 VYSKAPEY-PFGIRHMERRTDDTPGPNVYS-VDPMLSRTVRSQKPSAPMISMSSRSKIGG 571
               +P Y P    +       +P    YS   P  S T  +  P++P  S +S S    
Sbjct: 210 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSY--- 266

Query: 572 FHEDLQKTPGPGTYKVTDPGVFKSRYPMYSMTSRNPMPGDTTQKPGPGAYSAELVTFTRP 751
                  +P    Y  T P  +    P YS TS +  P   +  P    Y+ +  T+T P
Sbjct: 267 -------SPTSPNYTPTSPN-YSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYT-P 317

Query: 752 GAPKFT 769
            +P ++
Sbjct: 318 SSPSYS 323

>sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II largest subunit
          Length = 1840

 Score = 40.8 bits (94), Expect = 0.007
 Identities = 60/209 (28%), Positives = 68/209 (32%), Gaps = 5/209 (2%)
 Frame = +2

Query: 98   PIGAMYSSPGPQYMLPGLVGVTFHDPRSVHYKSPGWSFGLRHGKYQDDSSPGPCYFPNSK 277
            P    YS   P Y            P S  Y     S+      Y   S   P Y P S 
Sbjct: 1652 PTSPAYSPTSPSY-----------SPTSPSYSPTSPSYSPTSPSYSPTS---PSYSPTSP 1697

Query: 278  LYRTGKDG----SPQYSLYSRPKSLSLDYIPGPGAYKPESTIKKVYSKAPEY-PFGIRHM 442
             Y     G    SP YS    P S S  Y P   +Y P+S     YS +  Y P   R  
Sbjct: 1698 AYSPTSPGYSPTSPSYS----PTSPS--YGPTSPSYNPQSA---KYSPSIAYSPSNARLS 1748

Query: 443  ERRTDDTPGPNVYSVDPMLSRTVRSQKPSAPMISMSSRSKIGGFHEDLQKTPGPGTYKVT 622
                     PN     P  S T  S  PS+P  S SS    G   +    +P  G Y  T
Sbjct: 1749 PASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPD---YSPSAG-YSPT 1804

Query: 623  DPGVFKSRYPMYSMTSRNPMPGDTTQKPG 709
             PG   S    Y+     P  GD   K G
Sbjct: 1805 LPGYSPSSTGQYT-----PHEGDKKDKTG 1828

>sp|P04050|RPB1_YEAST DNA-directed RNA polymerase II largest subunit (RNA polymerase II
            subunit 1) (B220)
          Length = 1733

 Score = 39.3 bits (90), Expect = 0.021
 Identities = 59/211 (27%), Positives = 74/211 (35%), Gaps = 4/211 (1%)
 Frame = +2

Query: 104  GAMYSSPGPQYMLPGLVGVT-FHDPRSVHYKSPGWSFGLRHGKYQDDSSPGPCYFPNSKL 280
            G   +SPG     PG    +  + P S  Y     S+      Y   S   P Y P S  
Sbjct: 1527 GEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTS---PSYSPTSPS 1583

Query: 281  YRTGKDGSPQYSLYSRPKS-LSLDYIPGPGAYKPESTIKKVYSKAPEY-PFGIRHMERRT 454
            Y      SP YS  S   S  S  Y P   +Y P S      S  P Y P    +     
Sbjct: 1584 Y---SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSP 1638

Query: 455  DDTPGPNVYS-VDPMLSRTVRSQKPSAPMISMSSRSKIGGFHEDLQKTPGPGTYKVTDPG 631
              +P    YS   P  S T  +  P++P  S +S S           +P   +Y  T P 
Sbjct: 1639 SYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSY----------SPTSPSYSPTSPS 1688

Query: 632  VFKSRYPMYSMTSRNPMPGDTTQKPGPGAYS 724
             +    P YS TS +  P      PG  AYS
Sbjct: 1689 -YSPTSPNYSPTSPSYSPTSPGYSPGSPAYS 1718

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,094,024
Number of Sequences: 369166
Number of extensions: 3583528
Number of successful extensions: 9304
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9197
length of database: 68,354,980
effective HSP length: 112
effective length of database: 47,664,660
effective search space used: 12869458200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_011_N23
2. Dr_sW_002_G03
3. Dr_sW_019_H08