Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_N23
(665 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9M1G9|EXTN2_ARATH Extensin-2 precursor (AtExt2) (Cell w... 42 0.001
sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II largest... 42 0.001
sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II largest... 38 0.021
sp|P14907|NSP1_YEAST Nucleoporin NSP1 (Nuclear pore protein... 34 0.30
sp|P13983|EXTN_TOBAC Extensin precursor (Cell wall hydroxyp... 34 0.39
sp|Q9V8R9|41_DROME Protein 4.1 homolog (Coracle protein) 33 0.88
sp|Q61286|HTF4_MOUSE Transcription factor 12 (Transcription... 32 2.0
sp|P51514|HTF4_RAT Transcription factor 12 (Transcription f... 32 2.0
sp|Q8CI61|BAG4_MOUSE BAG-family molecular chaperone regulat... 31 2.5
sp|Q27409|FP1_MYTGA Adhesive plaque matrix protein precurso... 31 3.3
>sp|Q9M1G9|EXTN2_ARATH Extensin-2 precursor (AtExt2) (Cell wall hydroxyproline-rich
glycoprotein 1) (HRGP1)
Length = 743
Score = 42.4 bits (98), Expect = 0.001
Identities = 58/199 (29%), Positives = 68/199 (34%), Gaps = 6/199 (3%)
Frame = +2
Query: 80 YNVPRRPIGAMYSSPGPQYMLPGLVGVTFHDPRSVHYKSPGWSFGLRHGKYQDDSSPGPC 259
Y P P +YSSP P Y P VHYKSP Y S P P
Sbjct: 518 YKSPPPPY--VYSSPPPPYYSPS---------PKVHYKSP-------PPPYVYSSPPPPY 559
Query: 260 YFPNSKLYRTGKDGSPQYSLYSRPKSLSLDYIPGPGAYKPESTIKKVYSKAPEYPFGIRH 439
Y P+ K++ K P Y S P Y P P Y VYS P P+
Sbjct: 560 YSPSPKVHY--KSPPPPYVYNSPPPPY---YSPSPKVYYKSPPPPYVYSSPPP-PYYSPS 613
Query: 440 MERRTDDTPGPNVYSVDP----MLSRTVRSQKPSAPMISMSSR--SKIGGFHEDLQRTPG 601
+ P P VYS P S V + P P S S + K P
Sbjct: 614 PKVYYKSPPPPYVYSSPPPPYYSPSPKVYYKSPPPPYYSPSPKVYYKSPPHPHVCVCPPP 673
Query: 602 PGTYKDTDPGVFKSRYPMY 658
P Y + V+KS P Y
Sbjct: 674 PPCYSPSPKVVYKSPPPPY 692
Score = 42.0 bits (97), Expect = 0.001
Identities = 39/127 (30%), Positives = 46/127 (36%)
Frame = +2
Query: 113 YSSPGPQYMLPGLVGVTFHDPRSVHYKSPGWSFGLRHGKYQDDSSPGPCYFPNSKLYRTG 292
Y SP P Y+ T+ V+YKSP Y S P P Y P+ K+Y
Sbjct: 393 YKSPPPPYVYSSPPPPTYSPSPKVYYKSP-------PPPYVYSSPPPPYYSPSPKVYY-- 443
Query: 293 KDGSPQYSLYSRPKSLSLDYIPGPGAYKPESTIKKVYSKAPEYPFGIRHMERRTDDTPGP 472
K P Y S P Y P P Y VYS P P+ + P P
Sbjct: 444 KSPPPPYVYSSPPPPY---YSPSPKVYYKSPPPPYVYSSPPP-PYYSPSPKVYYKSPPPP 499
Query: 473 NVYSVDP 493
VYS P
Sbjct: 500 YVYSSPP 506
Score = 38.1 bits (87), Expect = 0.021
Identities = 39/127 (30%), Positives = 47/127 (37%)
Frame = +2
Query: 113 YSSPGPQYMLPGLVGVTFHDPRSVHYKSPGWSFGLRHGKYQDDSSPGPCYFPNSKLYRTG 292
Y SP P Y+ T+ V YKSP Y S P P Y P+ K+
Sbjct: 343 YKSPPPPYVYSSPPPPTYSPSPKVDYKSP-------PPPYVYSSPPPPYYSPSPKV--EY 393
Query: 293 KDGSPQYSLYSRPKSLSLDYIPGPGAYKPESTIKKVYSKAPEYPFGIRHMERRTDDTPGP 472
K P Y +YS P + Y P P Y VYS P P+ + P P
Sbjct: 394 KSPPPPY-VYSSPPPPT--YSPSPKVYYKSPPPPYVYSSPPP-PYYSPSPKVYYKSPPPP 449
Query: 473 NVYSVDP 493
VYS P
Sbjct: 450 YVYSSPP 456
Score = 37.7 bits (86), Expect = 0.027
Identities = 41/138 (29%), Positives = 49/138 (35%)
Frame = +2
Query: 80 YNVPRRPIGAMYSSPGPQYMLPGLVGVTFHDPRSVHYKSPGWSFGLRHGKYQDDSSPGPC 259
Y P P +YSSP P Y P V+YKSP Y S P P
Sbjct: 468 YKSPPPPY--VYSSPPPPYYSPS---------PKVYYKSPP-------PPYVYSSPPPPY 509
Query: 260 YFPNSKLYRTGKDGSPQYSLYSRPKSLSLDYIPGPGAYKPESTIKKVYSKAPEYPFGIRH 439
Y P+ K+Y K P Y S P Y P P + VYS P P+
Sbjct: 510 YSPSPKVYY--KSPPPPYVYSSPPPPY---YSPSPKVHYKSPPPPYVYSSPPP-PYYSPS 563
Query: 440 MERRTDDTPGPNVYSVDP 493
+ P P VY+ P
Sbjct: 564 PKVHYKSPPPPYVYNSPP 581
Score = 36.2 bits (82), Expect = 0.079
Identities = 38/132 (28%), Positives = 46/132 (34%), Gaps = 5/132 (3%)
Frame = +2
Query: 113 YSSPGPQYMLPGLVGVTFHDPRSVHYKSPGWSFGLRHGKYQDDSSPGPCYFPNSKLYRTG 292
Y SP P Y+ T+ V YKSP Y S P P Y P+ K+
Sbjct: 68 YKSPPPPYVYSSPPPPTYSPSPKVDYKSP-------PPPYVYSSPPPPYYSPSPKV--DY 118
Query: 293 KDGSPQYSLYSRP-----KSLSLDYIPGPGAYKPESTIKKVYSKAPEYPFGIRHMERRTD 457
K P Y S P S +DY P Y S YS +P+ +
Sbjct: 119 KSPPPPYVYNSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVEY---------K 169
Query: 458 DTPGPNVYSVDP 493
P P VYS P
Sbjct: 170 SPPPPYVYSSPP 181
Score = 35.8 bits (81), Expect = 0.10
Identities = 52/198 (26%), Positives = 67/198 (33%), Gaps = 16/198 (8%)
Frame = +2
Query: 113 YSSPGPQYMLPGLVGVTFHDPRSVHYKSPGWSFGLRHGKYQDDSSPGPCYFPNSKLYRTG 292
Y SP P Y+ + V+YKSP Y S P P Y P+ K++
Sbjct: 493 YKSPPPPYVYSSPPPPYYSPSPKVYYKSP-------PPPYVYSSPPPPYYSPSPKVHY-- 543
Query: 293 KDGSPQYSLYSRP-------------KSLSLDYI---PGPGAYKPESTIKKVYSKAPEYP 424
K P Y +YS P KS Y+ P P Y P KVY K+P P
Sbjct: 544 KSPPPPY-VYSSPPPPYYSPSPKVHYKSPPPPYVYNSPPPPYYSPS---PKVYYKSPPPP 599
Query: 425 FGIRHMERRTDDTPGPNVYSVDPMLSRTVRSQKPSAPMISMSSRSKIGGFHEDLQRTPGP 604
+ +P P YS P V + P P + S P P
Sbjct: 600 Y--------VYSSPPPPYYSPSP----KVYYKSPPPPYVYSS---------------PPP 632
Query: 605 GTYKDTDPGVFKSRYPMY 658
Y + +KS P Y
Sbjct: 633 PYYSPSPKVYYKSPPPPY 650
Score = 34.7 bits (78), Expect = 0.23
Identities = 43/144 (29%), Positives = 51/144 (35%), Gaps = 6/144 (4%)
Frame = +2
Query: 80 YNVPRRPIGAMYSSPGPQYMLPGLVGVTFHDPRSVHYKSPGWSFGLRHGKYQDDSSPGPC 259
Y P P +YSSP P Y P V YKSP Y S P P
Sbjct: 168 YKSPPPPY--VYSSPPPPYYSPS---------PKVDYKSPP-------PPYVYSSPPPPY 209
Query: 260 YFPNSKLYRTGKDGSPQYSLYSRP------KSLSLDYIPGPGAYKPESTIKKVYSKAPEY 421
Y P+ K+ K P Y +YS P S +DY P Y S YS +P+
Sbjct: 210 YSPSPKV--EYKSPPPPY-VYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKV 266
Query: 422 PFGIRHMERRTDDTPGPNVYSVDP 493
+ P P VYS P
Sbjct: 267 DY---------KSPPPPYVYSSPP 281
Score = 34.3 bits (77), Expect = 0.30
Identities = 38/133 (28%), Positives = 47/133 (35%), Gaps = 6/133 (4%)
Frame = +2
Query: 113 YSSPGPQYMLPGLVGVTFHDPRSVHYKSPGWSFGLRHGKYQDDSSPGPCYFPNSKLYRTG 292
Y SP P Y+ + V YKSP Y S P P Y P+ K+
Sbjct: 193 YKSPPPPYVYSSPPPPYYSPSPKVEYKSP-------PPPYVYSSPPPPYYSPSPKV--DY 243
Query: 293 KDGSPQYSLYSRP------KSLSLDYIPGPGAYKPESTIKKVYSKAPEYPFGIRHMERRT 454
K P Y +YS P S +DY P Y S YS +P+ +
Sbjct: 244 KSPPPPY-VYSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVDY--------- 293
Query: 455 DDTPGPNVYSVDP 493
P P VYS P
Sbjct: 294 KSPPPPYVYSSPP 306
Score = 33.9 bits (76), Expect = 0.39
Identities = 38/133 (28%), Positives = 47/133 (35%), Gaps = 6/133 (4%)
Frame = +2
Query: 113 YSSPGPQYMLPGLVGVTFHDPRSVHYKSPGWSFGLRHGKYQDDSSPGPCYFPNSKLYRTG 292
Y SP P Y+ + V YKSP Y S P P Y P+ K+
Sbjct: 293 YKSPPPPYVYSSPPPPYYSPSPKVDYKSP-------PPPYVYSSPPPPYYSPSPKV--DY 343
Query: 293 KDGSPQYSLYSRP------KSLSLDYIPGPGAYKPESTIKKVYSKAPEYPFGIRHMERRT 454
K P Y +YS P S +DY P Y S YS +P+ +
Sbjct: 344 KSPPPPY-VYSSPPPPTYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVEY--------- 393
Query: 455 DDTPGPNVYSVDP 493
P P VYS P
Sbjct: 394 KSPPPPYVYSSPP 406
>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II largest subunit
Length = 1853
Score = 42.4 bits (98), Expect = 0.001
Identities = 54/200 (27%), Positives = 69/200 (34%), Gaps = 9/200 (4%)
Frame = +2
Query: 89 PRRPIGAM------YSSPGPQYMLPGLVGVTFHDPRSVHYKSPGWSFGLRHGKYQDDSSP 250
P P+GA+ Y P P G + P HY S+ + S
Sbjct: 1556 PGDPLGALSPRTPAYGGMSPGVYSPASPGFSMTSP---HYSPTSPSYSPTSPAHHGQSPV 1612
Query: 251 GPCYFPNSKLYRTGKDGSPQYSLYSRPKS-LSLDYIPGPGAYKPESTIKKVYSKAPEY-P 424
P Y P S Y SP YS S S S Y P +Y P S S P Y P
Sbjct: 1613 SPSYSPTSPSY---SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--PSYSP 1667
Query: 425 FGIRHMERRTDDTPGPNVYS-VDPMLSRTVRSQKPSAPMISMSSRSKIGGFHEDLQRTPG 601
+ +P YS P S T + P++P S +S S G + +P
Sbjct: 1668 TSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPS 1727
Query: 602 PGTYKDTDPGVFKSRYPMYS 661
TY T P + P YS
Sbjct: 1728 SPTYSPTSPS-YSPTSPQYS 1746
>sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II largest subunit
Length = 1840
Score = 38.1 bits (87), Expect = 0.021
Identities = 55/193 (28%), Positives = 63/193 (32%), Gaps = 5/193 (2%)
Frame = +2
Query: 98 PIGAMYSSPGPQYMLPGLVGVTFHDPRSVHYKSPGWSFGLRHGKYQDDSSPGPCYFPNSK 277
P YS P Y P S Y S+ Y S P Y P S
Sbjct: 1652 PTSPAYSPTSPSY-----------SPTSPSYSPTSPSYSPTSPSYSPTS---PSYSPTSP 1697
Query: 278 LYRTGKDG----SPQYSLYSRPKSLSLDYIPGPGAYKPESTIKKVYSKAPEY-PFGIRHM 442
Y G SP YS P S S Y P +Y P+S YS + Y P R
Sbjct: 1698 AYSPTSPGYSPTSPSYS----PTSPS--YGPTSPSYNPQSA---KYSPSIAYSPSNARLS 1748
Query: 443 ERRTDDTPGPNVYSVDPMLSRTVRSQKPSAPMISMSSRSKIGGFHEDLQRTPGPGTYKDT 622
PN P S T S PS+P S SS G + +P G Y T
Sbjct: 1749 PASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPD---YSPSAG-YSPT 1804
Query: 623 DPGVFKSRYPMYS 661
PG S Y+
Sbjct: 1805 LPGYSPSSTGQYT 1817
>sp|P14907|NSP1_YEAST Nucleoporin NSP1 (Nuclear pore protein NSP1) (Nucleoskeletal-like
protein) (p110)
Length = 823
Score = 34.3 bits (77), Expect = 0.30
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 7/132 (5%)
Frame = +2
Query: 197 PGWSFGLRHGKYQDDSSPGPCYFPNSKLYRTGKDGS--PQYSLYSRPKSLSLDYIPGP-- 364
P +SFG + + +DD+S P + +K +DG+ P +S ++P + + P
Sbjct: 301 PAFSFGAKPEEKKDDNSSKPAFSFGAKSNEDKQDGTAKPAFSFGAKPAEKNNNETSKPAF 360
Query: 365 --GAYKPESTIKKVYSKAPEYPFGIRHMERRTDDTPGPNV-YSVDPMLSRTVRSQKPSAP 535
GA E K + P + FG + E + T P + P + S KP+
Sbjct: 361 SFGAKSDEK--KDGDASKPAFSFGAKPDENKASATSKPAFSFGAKPEEKKDDNSSKPAFS 418
Query: 536 MISMSSRSKIGG 571
+ S+ K G
Sbjct: 419 FGAKSNEDKQDG 430
Score = 33.1 bits (74), Expect = 0.67
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Frame = +2
Query: 197 PGWSFGLRHGKYQDDSSPGPCYFPNSKLYRTGKDGS--PQYSLYSRPKSLSLDYIPGP-- 364
P +SFG + + +DD+S P + +K +DG+ P +S ++P + + P
Sbjct: 396 PAFSFGAKPEEKKDDNSSKPAFSFGAKSNEDKQDGTAKPAFSFGAKPAEKNNNETSKPAF 455
Query: 365 --GAYKPESTIKKVYSKAPEYPFGIRHMERRTDDTPGP 472
GA E K + P + FG + E++ D+ P
Sbjct: 456 SFGAKSDEK--KDGDASKPAFSFGAKSDEKKDSDSSKP 491
>sp|P13983|EXTN_TOBAC Extensin precursor (Cell wall hydroxyproline-rich glycoprotein)
Length = 620
Score = 33.9 bits (76), Expect = 0.39
Identities = 45/159 (28%), Positives = 52/159 (32%), Gaps = 4/159 (2%)
Frame = +2
Query: 80 YNVPRRPIGAMYSSPGPQYMLPGLVGVTFHDPRSVHYKSPGWSFGLRHGKYQDDSSPGPC 259
Y+ P P YS P P Y+ P P S P SF Y+ P P
Sbjct: 353 YSPPPPP---SYSPPPPTYLPP--------PPPS---SPPPPSFSPPPPTYEQSPPPPPA 398
Query: 260 YFPNSKLYRTGKDGSPQYS----LYSRPKSLSLDYIPGPGAYKPESTIKKVYSKAPEYPF 427
Y P T P YS Y++P L Y P P AY P YS P P
Sbjct: 399 YSPPLPAPPTYSPPPPTYSPPPPTYAQPPPLPPTYSPPPPAYSPPP--PPTYSPPP--PT 454
Query: 428 GIRHMERRTDDTPGPNVYSVDPMLSRTVRSQKPSAPMIS 544
P P YS P S P +P+ S
Sbjct: 455 YSPPPPAYAQPPPPPPTYSPPP----PAYSPPPPSPIYS 489
>sp|Q9V8R9|41_DROME Protein 4.1 homolog (Coracle protein)
Length = 1698
Score = 32.7 bits (73), Expect = 0.88
Identities = 34/132 (25%), Positives = 52/132 (39%), Gaps = 7/132 (5%)
Frame = +2
Query: 266 PNSKLYRTGKDGSPQYSLYSRPKSLSLDYIPGPGAYKPESTIKKVYSKAPEYPFGIRHME 445
PNS+ ++G DG Q S S+ K + L + PG E+ +K+ K R +
Sbjct: 583 PNSR--KSGADGQEQLSPTSQQKKIGLAFNYAPG---NENALKETAEKLKAGQLSPRTQD 637
Query: 446 RRTDDTPGPNVYS---VDPMLSRTVRSQ----KPSAPMISMSSRSKIGGFHEDLQRTPGP 604
+ P + DP+LS T R++ A + +S K T GP
Sbjct: 638 KLNRGQLSPKSRAKLLQDPLLSPTTRAKLQGSAVDAAAVPLSDSQK-----RSYSPTKGP 692
Query: 605 GTYKDTDPGVFK 640
Y PG +K
Sbjct: 693 QGYSSGAPGSYK 704
>sp|Q61286|HTF4_MOUSE Transcription factor 12 (Transcription factor HTF-4) (E-box-binding
protein) (DNA-binding protein HTF4) (Class A
helix-loop-helix transcription factor ME1)
Length = 706
Score = 31.6 bits (70), Expect = 2.0
Identities = 39/144 (27%), Positives = 55/144 (38%), Gaps = 7/144 (4%)
Frame = +2
Query: 194 SPGWSFGLRHGKYQDDSSPGPCYFPNSKLY-RTGKDGSPQYSLYSRPKSLS------LDY 352
SP +S L + P F NS L +T + GS +SLYSR LS L
Sbjct: 79 SPHYSDHLNDSRLGTHEGLSPTPFMNSNLIGKTSERGS--FSLYSRDSGLSGCQSSLLRQ 136
Query: 353 IPGPGAYKPESTIKKVYSKAPEYPFGIRHMERRTDDTPGPNVYSVDPMLSRTVRSQKPSA 532
G G+ S+ K P Y F RR P + ++DP+ ++ VR P
Sbjct: 137 DLGLGSPAQLSSSGK--PGTPYYSFSATSSRRR----PLHDSVALDPLQAKKVRKVPPGL 190
Query: 533 PMISMSSRSKIGGFHEDLQRTPGP 604
P + F+ + P P
Sbjct: 191 PSSVYAPSPNSDDFNRESPSYPSP 214
>sp|P51514|HTF4_RAT Transcription factor 12 (Transcription factor HTF-4) (E-box-binding
protein) (Salivary-specific cAMP response
element-binding protein alpha) (SCBP alpha) (DNA-binding
protein HTF4)
Length = 707
Score = 31.6 bits (70), Expect = 2.0
Identities = 39/144 (27%), Positives = 55/144 (38%), Gaps = 7/144 (4%)
Frame = +2
Query: 194 SPGWSFGLRHGKYQDDSSPGPCYFPNSKLY-RTGKDGSPQYSLYSRPKSLS------LDY 352
SP +S L + P F NS L +T + GS +SLYSR LS L
Sbjct: 79 SPHYSDHLNDSRLGTHEGLSPTPFMNSNLIGKTSERGS--FSLYSRDSGLSGCQSSLLRQ 136
Query: 353 IPGPGAYKPESTIKKVYSKAPEYPFGIRHMERRTDDTPGPNVYSVDPMLSRTVRSQKPSA 532
G G+ S+ K P Y F RR P + ++DP+ ++ VR P
Sbjct: 137 DLGLGSPAQLSSSGK--PGTPYYSFSATSSRRR----PLHDSVALDPLQAKKVRKVPPGL 190
Query: 533 PMISMSSRSKIGGFHEDLQRTPGP 604
P + F+ + P P
Sbjct: 191 PSSVYAPSPNSDDFNRESPSYPSP 214
>sp|Q8CI61|BAG4_MOUSE BAG-family molecular chaperone regulator-4 (BCL2-associated
athanogene 4) (BAG-4) (Silencer of death domains)
Length = 457
Score = 31.2 bits (69), Expect = 2.5
Identities = 40/169 (23%), Positives = 61/169 (36%), Gaps = 22/169 (13%)
Frame = +2
Query: 176 RSVHYKSPGWSFGLRHGKYQDDSS---PGPCYFP------NSKLYRTGKDGSPQYSLYSR 328
RS + S G S+G +G D P P Y P + G+ G+P + +
Sbjct: 6 RSGYGPSDGPSYGRYYGPGGGDVPVHVPPPLYPPLRPEPPQPPVSWRGRGGAPAETTWPG 65
Query: 329 PKSLSLDYIPGPGAYKPESTIKKVYSKAPEYP-FGIRHMERRTDDTPGPNVYSVDPML-S 502
+ Y P GA+ S + + P YP + + P P YSV P L
Sbjct: 66 EGAGGDGYYPSGGAWAEASRAGGGHQEQPPYPGYNSNYWNSVRPRAPYPGSYSVRPELQG 125
Query: 503 RTVRSQK-----------PSAPMISMSSRSKIGGFHEDLQRTPGPGTYK 616
+++ S P A S S + G+ + T P TY+
Sbjct: 126 QSLNSYANGAYGPPYPPGPGASTASYSGAYYVPGYTQSNYSTEVPNTYR 174
>sp|Q27409|FP1_MYTGA Adhesive plaque matrix protein precursor (Foot protein 1) (MGFP1)
(MGFP-1)
Length = 751
Score = 30.8 bits (68), Expect = 3.3
Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Frame = +2
Query: 230 YQDDSSPGPCYFPNSKLYRTGKDGSPQYSLYSRPKSLSLDYIPG---PGAYKPESTIKKV 400
Y+ S P Y P T K S S Y K+ Y P P YKP+ +
Sbjct: 119 YKPKPSYPPTYKPKPSYPATYKSKSSYPSSYKPKKTYPPTYKPKLTYPPTYKPKPSYPPT 178
Query: 401 YSKAPEYP 424
Y P YP
Sbjct: 179 YKPKPSYP 186
Score = 29.3 bits (64), Expect = 9.7
Identities = 20/65 (30%), Positives = 24/65 (36%)
Frame = +2
Query: 230 YQDDSSPGPCYFPNSKLYRTGKDGSPQYSLYSRPKSLSLDYIPGPGAYKPESTIKKVYSK 409
Y+ S P Y P T K S S Y K+ P YKP+ T +Y
Sbjct: 673 YKAKPSYPPTYKPKPSYPPTYKSKSSYPSSYKPKKTY-------PPTYKPKLTYPPIYKP 725
Query: 410 APEYP 424
P YP
Sbjct: 726 KPSYP 730
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,384,281
Number of Sequences: 369166
Number of extensions: 2171674
Number of successful extensions: 5330
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5272
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5608903050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)