Planaria EST Database


DrC_00451

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00451
         (637 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q28983|ZAN_PIG  Zonadhesin precursor                            33   0.80 
sp|Q62599|MTA1_RAT  Metastasis-associated protein MTA1             29   8.8  
sp|Q8K4B0|MTA1_MOUSE  Metastasis-associated protein MTA1           29   8.8  
sp|P57262|NUOL_BUCAI  NADH-quinone oxidoreductase chain L (N...    29   8.8  
sp|Q13330|MTA1_HUMAN  Metastasis-associated protein MTA1           29   8.8  
>sp|Q28983|ZAN_PIG Zonadhesin precursor
          Length = 2476

 Score = 32.7 bits (73), Expect = 0.80
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
 Frame = +2

Query: 341  WYIDESCADKCCCQCYNKSSCG----------WRYHGFIKFSISQSW*RLCG*CWTDWKI 490
            WY D SC+  C C  +N  SC           W   G I+  ++     +C    T   +
Sbjct: 1527 WYTDNSCSRLCTCSAHNNISCRQASCKPSQMCWPQDGLIRCRVAGM--GVCRIPDTSHYV 1584

Query: 491  *FLSQYHAQGQNSSY 535
             F   YHA   N +Y
Sbjct: 1585 SFDGSYHAVRGNCTY 1599
>sp|Q62599|MTA1_RAT Metastasis-associated protein MTA1
          Length = 703

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = +2

Query: 362 ADKCCCQCYNKSSCGWRYHGFIKFSISQSW*RLCG*CWTDWK 487
           A + C  CY   S  W   G           RLC  CWT WK
Sbjct: 389 AGRACESCYTTQSYQWYSWGPPNMQC-----RLCASCWTYWK 425
>sp|Q8K4B0|MTA1_MOUSE Metastasis-associated protein MTA1
          Length = 715

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = +2

Query: 362 ADKCCCQCYNKSSCGWRYHGFIKFSISQSW*RLCG*CWTDWK 487
           A + C  CY   S  W   G           RLC  CWT WK
Sbjct: 389 AGRACESCYTTQSYQWYSWGPPNMQC-----RLCASCWTYWK 425
>sp|P57262|NUOL_BUCAI NADH-quinone oxidoreductase chain L (NADH dehydrogenase I, chain L)
           (NDH-1, chain L)
          Length = 614

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = -1

Query: 367 VSTTFINVPTFLI----NTFTFRSVNIIASGIFIQNLRSIDFVVAF 242
           VS  F+ +  FLI    N+F F+ +  ++S + ++N   +D++  F
Sbjct: 176 VSDVFLMIGMFLIYREFNSFNFQEIKFLSSFLNVENFYYLDYITLF 221
>sp|Q13330|MTA1_HUMAN Metastasis-associated protein MTA1
          Length = 715

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = +2

Query: 362 ADKCCCQCYNKSSCGWRYHGFIKFSISQSW*RLCG*CWTDWK 487
           A + C  CY   S  W   G           RLC  CWT WK
Sbjct: 389 AGRACESCYTTQSYQWYSWGPPNMQC-----RLCASCWTYWK 425
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,279,917
Number of Sequences: 369166
Number of extensions: 1267736
Number of successful extensions: 3074
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3070
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5121172350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00451

  1. Dr_sW_024_P10
  2. Dr_sW_011_N12
  3. Dr_sW_025_D18