Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_N12
(637 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q28983|ZAN_PIG Zonadhesin precursor 33 0.80
sp|Q62599|MTA1_RAT Metastasis-associated protein MTA1 29 8.8
sp|Q8K4B0|MTA1_MOUSE Metastasis-associated protein MTA1 29 8.8
sp|P57262|NUOL_BUCAI NADH-quinone oxidoreductase chain L (N... 29 8.8
sp|Q13330|MTA1_HUMAN Metastasis-associated protein MTA1 29 8.8
>sp|Q28983|ZAN_PIG Zonadhesin precursor
Length = 2476
Score = 32.7 bits (73), Expect = 0.80
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
Frame = +2
Query: 341 WYIDESCADKCCCQCYNKSSCG----------WRYHGFIKFSISQSW*RLCG*CWTDWKI 490
WY D SC+ C C +N SC W G I+ ++ +C T +
Sbjct: 1527 WYTDNSCSRLCTCSAHNNISCRQASCKPSQMCWPQDGLIRCRVAGM--GVCRIPDTSHYV 1584
Query: 491 *FLSQYHAQGQNSSY 535
F YHA N +Y
Sbjct: 1585 SFDGSYHAVRGNCTY 1599
>sp|Q62599|MTA1_RAT Metastasis-associated protein MTA1
Length = 703
Score = 29.3 bits (64), Expect = 8.8
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +2
Query: 362 ADKCCCQCYNKSSCGWRYHGFIKFSISQSW*RLCG*CWTDWK 487
A + C CY S W G RLC CWT WK
Sbjct: 389 AGRACESCYTTQSYQWYSWGPPNMQC-----RLCASCWTYWK 425
>sp|Q8K4B0|MTA1_MOUSE Metastasis-associated protein MTA1
Length = 715
Score = 29.3 bits (64), Expect = 8.8
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +2
Query: 362 ADKCCCQCYNKSSCGWRYHGFIKFSISQSW*RLCG*CWTDWK 487
A + C CY S W G RLC CWT WK
Sbjct: 389 AGRACESCYTTQSYQWYSWGPPNMQC-----RLCASCWTYWK 425
>sp|P57262|NUOL_BUCAI NADH-quinone oxidoreductase chain L (NADH dehydrogenase I, chain L)
(NDH-1, chain L)
Length = 614
Score = 29.3 bits (64), Expect = 8.8
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = -1
Query: 367 VSTTFINVPTFLI----NTFTFRSVNIIASGIFIQNLRSIDFVVAF 242
VS F+ + FLI N+F F+ + ++S + ++N +D++ F
Sbjct: 176 VSDVFLMIGMFLIYREFNSFNFQEIKFLSSFLNVENFYYLDYITLF 221
>sp|Q13330|MTA1_HUMAN Metastasis-associated protein MTA1
Length = 715
Score = 29.3 bits (64), Expect = 8.8
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = +2
Query: 362 ADKCCCQCYNKSSCGWRYHGFIKFSISQSW*RLCG*CWTDWK 487
A + C CY S W G RLC CWT WK
Sbjct: 389 AGRACESCYTTQSYQWYSWGPPNMQC-----RLCASCWTYWK 425
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,279,917
Number of Sequences: 369166
Number of extensions: 1267736
Number of successful extensions: 3074
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3070
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5121172350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)