Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_P10
(462 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q28983|ZAN_PIG Zonadhesin precursor 31 1.2
sp|P57262|NUOL_BUCAI NADH-quinone oxidoreductase chain L (N... 29 4.5
sp|O64474|AHM2_ARATH Putative cadmium/zinc-transporting ATP... 28 7.6
sp|P57999|ZAN_RABIT Zonadhesin 28 7.6
sp|P53550|DCP2_YEAST mRNA decapping protein 2 (Protein PSU1) 28 9.9
sp|P48831|ZP3_CANFA Zona pellucida sperm-binding protein 3 ... 28 9.9
>sp|Q28983|ZAN_PIG Zonadhesin precursor
Length = 2476
Score = 31.2 bits (69), Expect = 1.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 317 WYIDESCADKCCCQCYNKSSC 379
WY D SC+ C C +N SC
Sbjct: 1527 WYTDNSCSRLCTCSAHNNISC 1547
>sp|P57262|NUOL_BUCAI NADH-quinone oxidoreductase chain L (NADH dehydrogenase I, chain L)
(NDH-1, chain L)
Length = 614
Score = 29.3 bits (64), Expect = 4.5
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = -3
Query: 343 VSTTFINVPTFLI----NTFTFRSVNIIASGIFIQNLRSIDFVVAF 218
VS F+ + FLI N+F F+ + ++S + ++N +D++ F
Sbjct: 176 VSDVFLMIGMFLIYREFNSFNFQEIKFLSSFLNVENFYYLDYITLF 221
>sp|O64474|AHM2_ARATH Putative cadmium/zinc-transporting ATPase 2
Length = 1172
Score = 28.5 bits (62), Expect = 7.6
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 11/35 (31%)
Frame = +2
Query: 323 IDESCADKC-----------CCQCYNKSSCGWRYH 394
I E+CA KC CC+ Y K C R+H
Sbjct: 1126 IPEACASKCRDRAKRHSGKSCCRSYAKELCSHRHH 1160
>sp|P57999|ZAN_RABIT Zonadhesin
Length = 2282
Score = 28.5 bits (62), Expect = 7.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +2
Query: 317 WYIDESCADKCCCQCYNKSSC 379
WY D +C+ C C +N +C
Sbjct: 1338 WYTDNTCSRLCTCSLHNNITC 1358
>sp|P53550|DCP2_YEAST mRNA decapping protein 2 (Protein PSU1)
Length = 970
Score = 28.1 bits (61), Expect = 9.9
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 6 ESSGDLNKESCSRNNNSLNLDAMFDVVLKRFQSQRSQVNLP 128
ESS D E+ NSLN+D +V+ S+RSQ P
Sbjct: 532 ESSSDEEVETARDERNSLNVDIGVNVMPSEKDSRRSQKEKP 572
>sp|P48831|ZP3_CANFA Zona pellucida sperm-binding protein 3 precursor (Zona pellucida
glycoprotein ZP3) (Sperm receptor) (Zona pellucida
protein C)
Length = 426
Score = 28.1 bits (61), Expect = 9.9
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +2
Query: 311 KCWYIDESCADKCCCQCYNKSSCG 382
K WY E AD C+C NK SCG
Sbjct: 305 KRWYPVEGSAD--ICRCCNKGSCG 326
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,618,905
Number of Sequences: 369166
Number of extensions: 803792
Number of successful extensions: 1976
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1972
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2584230740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)