• TOP
• EST
• Cluster

Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00450
         (892 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8Z2E3|LLDP_SALTI  L-lactate permease                           32   1.8  
sp|Q8ZL63|LLDP_SALTY  L-lactate permease                           32   1.8  
sp|P33231|LLDP_ECOLI  L-lactate permease                           31   5.3  
sp|P65253|LLDP_ECOL6  L-lactate permease >gi|54037738|sp|P65...    31   5.3  

>sp|Q8Z2E3|LLDP_SALTI L-lactate permease
          Length = 551

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = -2

Query: 774 NLPILMWLFTLVGLNIPGYVVAKTSVIISEAPSVM 670
           +LPIL + F L+ L + GYV A  +V+I+ A +++
Sbjct: 22  SLPILFFFFALIKLKLKGYVAASWTVVIALAVALL 56

>sp|Q8ZL63|LLDP_SALTY L-lactate permease
          Length = 551

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = -2

Query: 774 NLPILMWLFTLVGLNIPGYVVAKTSVIISEAPSVM 670
           +LPIL + F L+ L + GYV A  +V+I+ A +++
Sbjct: 22  SLPILFFFFALIKLKLKGYVAASWTVVIALAVALL 56

>sp|P33231|LLDP_ECOLI L-lactate permease
          Length = 551

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -2

Query: 774 NLPILMWLFTLVGLNIPGYVVAKTSVIISEAPSVM 670
           +LPIL + F L+ L + GYV A  +V I+ A +++
Sbjct: 22  SLPILFFFFALIKLKLKGYVAASWTVAIALAVALL 56

>sp|P65253|LLDP_ECOL6 L-lactate permease
 sp|P65254|LLDP_ECO57 L-lactate permease
          Length = 551

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -2

Query: 774 NLPILMWLFTLVGLNIPGYVVAKTSVIISEAPSVM 670
           +LPIL + F L+ L + GYV A  +V I+ A +++
Sbjct: 22  SLPILFFFFALIKLKLKGYVAASWTVAIALAVALL 56

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,220,101
Number of Sequences: 369166
Number of extensions: 2051117
Number of successful extensions: 4917
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4916
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_011_N01
2. Dr_sW_028_E02