Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_N01
(889 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8Z2E3|LLDP_SALTI L-lactate permease 32 1.8
sp|Q8ZL63|LLDP_SALTY L-lactate permease 32 1.8
sp|P33231|LLDP_ECOLI L-lactate permease 31 5.3
sp|P65253|LLDP_ECOL6 L-lactate permease >gi|54037738|sp|P65... 31 5.3
>sp|Q8Z2E3|LLDP_SALTI L-lactate permease
Length = 551
Score = 32.3 bits (72), Expect = 1.8
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = -2
Query: 774 NLPILMWLFTLVGLNIPGYVVAKTSVIISEAPSVM 670
+LPIL + F L+ L + GYV A +V+I+ A +++
Sbjct: 22 SLPILFFFFALIKLKLKGYVAASWTVVIALAVALL 56
>sp|Q8ZL63|LLDP_SALTY L-lactate permease
Length = 551
Score = 32.3 bits (72), Expect = 1.8
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = -2
Query: 774 NLPILMWLFTLVGLNIPGYVVAKTSVIISEAPSVM 670
+LPIL + F L+ L + GYV A +V+I+ A +++
Sbjct: 22 SLPILFFFFALIKLKLKGYVAASWTVVIALAVALL 56
>sp|P33231|LLDP_ECOLI L-lactate permease
Length = 551
Score = 30.8 bits (68), Expect = 5.3
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -2
Query: 774 NLPILMWLFTLVGLNIPGYVVAKTSVIISEAPSVM 670
+LPIL + F L+ L + GYV A +V I+ A +++
Sbjct: 22 SLPILFFFFALIKLKLKGYVAASWTVAIALAVALL 56
>sp|P65253|LLDP_ECOL6 L-lactate permease
sp|P65254|LLDP_ECO57 L-lactate permease
Length = 551
Score = 30.8 bits (68), Expect = 5.3
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -2
Query: 774 NLPILMWLFTLVGLNIPGYVVAKTSVIISEAPSVM 670
+LPIL + F L+ L + GYV A +V I+ A +++
Sbjct: 22 SLPILFFFFALIKLKLKGYVAASWTVAIALAVALL 56
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,390,358
Number of Sequences: 369166
Number of extensions: 2037287
Number of successful extensions: 4870
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4869
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8886314050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)