Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_E02
(435 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91713|CHRD_XENLA Chordin precursor (Organizer-specific ... 29 3.8
sp|Q7JLI1|NAS31_CAEEL Zinc metalloproteinase nas-31 precurs... 28 6.5
sp|Q9MUS7|RPOC2_MESVI DNA-directed RNA polymerase beta'' ch... 28 6.5
>sp|Q91713|CHRD_XENLA Chordin precursor (Organizer-specific secreted dorsalizing factor)
Length = 941
Score = 29.3 bits (64), Expect = 3.8
Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 12/69 (17%)
Frame = +1
Query: 82 QRELVSNVTSKIHFQSDEVASSIGPRFYSGAVEYYSKL------------IRVNKLHHRW 225
Q EL NV +K FQ E+ I P YSG Y KL IR H W
Sbjct: 496 QSELFLNVATK-DFQEGELRGQITPLLYSGLWARYEKLPVPLAGQFVSPPIRTGSAGHAW 554
Query: 226 GFTDYYTSL 252
D + L
Sbjct: 555 VSLDEHCHL 563
>sp|Q7JLI1|NAS31_CAEEL Zinc metalloproteinase nas-31 precursor (Nematode astacin 31)
Length = 611
Score = 28.5 bits (62), Expect = 6.5
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 232 TDYYTSLGNDVSGMFSPTNVNNHIRIGKLYHLLPAESSKEQKN 360
T+Y ++G+D G + + +N H K L PA SS + KN
Sbjct: 328 TEYQDTMGSDFVGFYDISMMNEHY---KCKELCPAASSAQCKN 367
>sp|Q9MUS7|RPOC2_MESVI DNA-directed RNA polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1223
Score = 28.5 bits (62), Expect = 6.5
Identities = 14/61 (22%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +1
Query: 34 LNAPVYIVLVL--AVFVTQRELVSNVTSKIHFQSDEVASSIGPRFYSGAVEYYSKLIRVN 207
+ P+ +L++ V ++L++ V++ ++ QS E+AS +SG + + + L++
Sbjct: 414 IEVPINTILLVNNGSMVRAKQLIAEVSAPVNAQSVEIASKYVASDFSGEIHFENLLLQEK 473
Query: 208 K 210
K
Sbjct: 474 K 474
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,183,129
Number of Sequences: 369166
Number of extensions: 1068334
Number of successful extensions: 2621
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2621
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2194785120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)