Planaria EST Database

DrC_00446

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00446
         (759 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O01802|RL7_CAEEL  60S ribosomal protein L7                     159   8e-39
sp|Q58DT1|RL7_BOVIN  60S ribosomal protein L7                     157   2e-38
sp|P18124|RL7_HUMAN  60S ribosomal protein L7                     157   4e-38
sp|P14148|RL7_MOUSE  60S ribosomal protein L7                     154   3e-37
sp|P05426|RL7_RAT  60S ribosomal protein L7                       153   6e-37
sp|Q755A7|RL7_ASHGO  60S ribosomal protein L7                     147   3e-35
sp|Q9LHP1|RL73_ARATH  60S ribosomal protein L7-3                  147   4e-35
sp|P11874|RL7_DICDI  60S ribosomal protein L7                     146   5e-35
sp|P32100|RL7_DROME  60S ribosomal protein L7                     146   7e-35
sp|Q6C603|RL7_YARLI  60S ribosomal protein L7                     146   7e-35

>sp|O01802|RL7_CAEEL 60S ribosomal protein L7
          Length = 244

 Score =  159 bits (402), Expect = 8e-39
 Identities = 85/242 (35%), Positives = 130/242 (53%), Gaps = 3/242 (1%)
 Frame = +1

Query: 16  KLETIKETVLKRRKTANRDVTRQQLEKSRNVRMQARKRRSLIKTSAAFIIDAKKRHYDNK 195
           K+  + ETVLKRRK      T+    K         K+    K +  ++ + +    +  
Sbjct: 6   KVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKEGL 65

Query: 196 RIKN-AKRSTPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVKVDQRM 372
           R+K  A+     Y+P   K+  V+R+ G N L  K     + L+L   N  VFVK+++  
Sbjct: 66  RLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKAT 125

Query: 373 LRKLNIIKPYITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNVICVAD 552
           L  L II+PY+ WGYP+ + + DLL KRG+A +D  R  I DN  +E+ LG++N+IC+ D
Sbjct: 126 LPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLED 185

Query: 553 IVHELVNVGENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHL--STELGNRDLYINDLLKR 726
           + HE+  VG +F    NF+WPFKL +   GW     K  H     + GNR+  IN+LL++
Sbjct: 186 LAHEIATVGPHFKEATNFLWPFKLNNPTGGWT---KKTNHFVEGGDFGNREDQINNLLRK 242

Query: 727 MI 732
           M+
Sbjct: 243 MV 244

>sp|Q58DT1|RL7_BOVIN 60S ribosomal protein L7
          Length = 248

 Score =  157 bits (398), Expect = 2e-38
 Identities = 87/242 (35%), Positives = 140/242 (57%), Gaps = 4/242 (1%)
 Frame = +1

Query: 16  KLETIKETVLKRRKTANRDVTRQQLEKSRNVRMQARKRRSLIKTSAAFIIDAKKRHY--D 189
           K+  + ET+ K+RK    ++  ++L K    +M  + RR LI   A       ++ Y  +
Sbjct: 10  KVPAVPETLKKKRKNF-AELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTE 68

Query: 190 NKRIKNAKRSTPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVKVDQR 369
            +  + A+++   Y+P  PKL  VIR+ G NG+S K   + + L+L       FVK+++ 
Sbjct: 69  IRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKA 128

Query: 370 MLRKLNIIKPYITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNVICVA 549
            +  L I++PYI WGYP+ + V++L+ KRG+  I+ KR  + DN  I + LG+Y +IC+ 
Sbjct: 129 SINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICME 188

Query: 550 DIVHELVNVGENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHL--STELGNRDLYINDLLK 723
           D++HE+  VG+ F   NNF+WPFK LS+P G  G+  K  H     + GNR+  IN L++
Sbjct: 189 DLIHEIYTVGKRFKEANNFLWPFK-LSSPRG--GMKKKTTHFVEGGDAGNREDQINRLIR 245

Query: 724 RM 729
           RM
Sbjct: 246 RM 247

>sp|P18124|RL7_HUMAN 60S ribosomal protein L7
          Length = 248

 Score =  157 bits (396), Expect = 4e-38
 Identities = 92/246 (37%), Positives = 140/246 (56%), Gaps = 4/246 (1%)
 Frame = +1

Query: 4   PAAPKLETIKETVLKRRKTANRDVTRQQLEKSRNVRMQARKRRSLIKTSAAFIIDAKKRH 183
           PA P  ET+K+   KRR  A   + R  L K    +M  + RR LI   A       ++ 
Sbjct: 12  PAVP--ETLKK---KRRNFAELKIKR--LRKKFAQKMLRKARRKLIYEKAKHYHKEYRQM 64

Query: 184 Y--DNKRIKNAKRSTPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVK 357
           Y  + +  + A+++   Y+P  PKL  VIR+ G NG+S K   + + L+L       FVK
Sbjct: 65  YRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVK 124

Query: 358 VDQRMLRKLNIIKPYITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNV 537
           +++  +  L I++PYI WGYP+ + V++L+ KRG+  I+ KR  + DN  I + LG+Y +
Sbjct: 125 LNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGI 184

Query: 538 ICVADIVHELVNVGENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHL--STELGNRDLYIN 711
           IC+ D++HE+  VG+ F   NNF+WPFK LS+P G  G+  K  H     + GNR+  IN
Sbjct: 185 ICMEDLIHEIYTVGKRFKEANNFLWPFK-LSSPRG--GMKKKTTHFVEGGDAGNREDQIN 241

Query: 712 DLLKRM 729
            L++RM
Sbjct: 242 RLIRRM 247

>sp|P14148|RL7_MOUSE 60S ribosomal protein L7
          Length = 270

 Score =  154 bits (388), Expect = 3e-37
 Identities = 91/246 (36%), Positives = 140/246 (56%), Gaps = 4/246 (1%)
 Frame = +1

Query: 4   PAAPKLETIKETVLKRRKTANRDVTRQQLEKSRNVRMQARKRRSLIKTSAAFIIDAKKRH 183
           PA P  ET+K+   KRR  A   V R  L K   ++   + RR LI   A       ++ 
Sbjct: 34  PAVP--ETLKK---KRRNFAELKVKR--LRKKFALKTLRKARRKLIYEKAKHYHKEYRQM 86

Query: 184 Y--DNKRIKNAKRSTPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVK 357
           Y  + +  + A+++   Y+P  PKL  VIR+ G NG+S K   + + L+L       FVK
Sbjct: 87  YRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVK 146

Query: 358 VDQRMLRKLNIIKPYITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNV 537
           +++  +  L I++PYI WGYP+ + V++L+ KRG+  I+ KR  + DN  I + LG++ +
Sbjct: 147 LNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGI 206

Query: 538 ICVADIVHELVNVGENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHL--STELGNRDLYIN 711
           IC+ D++HE+  VG+ F   NNF+WPFK LS+P G  G+  K  H     + GNR+  IN
Sbjct: 207 ICMEDLIHEIYTVGKRFKEANNFLWPFK-LSSPRG--GMKKKTTHFVEGGDAGNREDQIN 263

Query: 712 DLLKRM 729
            L++RM
Sbjct: 264 RLIRRM 269

>sp|P05426|RL7_RAT 60S ribosomal protein L7
          Length = 260

 Score =  153 bits (386), Expect = 6e-37
 Identities = 90/246 (36%), Positives = 140/246 (56%), Gaps = 4/246 (1%)
 Frame = +1

Query: 4   PAAPKLETIKETVLKRRKTANRDVTRQQLEKSRNVRMQARKRRSLIKTSAAFIIDAKKRH 183
           PA P  ET+K+   KRR  A   V R  L K   ++   + RR LI   A       ++ 
Sbjct: 24  PAVP--ETLKK---KRRNFAELKVKR--LRKKFALKTLRKARRKLIYEKAKHYHKEYRQM 76

Query: 184 Y--DNKRIKNAKRSTPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVK 357
           Y  + +  + A+++   Y+P  PKL  VIR+ G NG+S K   + + L+L       FVK
Sbjct: 77  YRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVK 136

Query: 358 VDQRMLRKLNIIKPYITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNV 537
           +++  +  L I++PYI WGYP+ + V++L+ KRG+  I+ KR  + DN  + + LG++ +
Sbjct: 137 LNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLVARSLGKFGI 196

Query: 538 ICVADIVHELVNVGENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHL--STELGNRDLYIN 711
           IC+ D++HE+  VG+ F   NNF+WPFK LS+P G  G+  K  H     + GNR+  IN
Sbjct: 197 ICMEDLIHEIYTVGKRFKEANNFLWPFK-LSSPRG--GMKKKTTHFVEGGDAGNREDQIN 253

Query: 712 DLLKRM 729
            L++RM
Sbjct: 254 RLIRRM 259

>sp|Q755A7|RL7_ASHGO 60S ribosomal protein L7
          Length = 243

 Score =  147 bits (371), Expect = 3e-35
 Identities = 81/237 (34%), Positives = 132/237 (55%), Gaps = 5/237 (2%)
 Frame = +1

Query: 34  ETVLKRRKTANRDVTRQQLEKSRNVRMQARKRRSLIKTSAAFIID---AKKRHYDNKRIK 204
           E+ LK+ K   +   +   E++        KR ++++ +AA+  +   A++     KR  
Sbjct: 9   ESQLKKSKAQQKSAEQVAAERAARKAANKEKRAAILERNAAYHKEYETAERAVIQAKR-- 66

Query: 205 NAKRSTPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVKVDQRMLRKL 384
            AK +   Y+   PKL  VIR+ G N ++ K   + + L+L+  N  VFVKV +     L
Sbjct: 67  EAKANGSYYVESQPKLVFVIRIKGINKIAPKPRKVLQLLRLNQINSGVFVKVTKATTELL 126

Query: 385 NIIKPYITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNVICVADIVHE 564
            +++PY+ +GYPS   +  L+ KRG+  I+ +R  + +N  +E +LG+Y +I V D++HE
Sbjct: 127 RLVEPYVAYGYPSYSTIRQLVYKRGYGKINKQRIALSENSIVEANLGKYGIISVDDLIHE 186

Query: 565 LVNVGENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHL--STELGNRDLYINDLLKRM 729
           ++ VG +F   NNF+WPFKL +   GW GV  K KH       GNR+ +IN L+K M
Sbjct: 187 IITVGPHFKQANNFLWPFKLSNPSGGW-GVPRKFKHFIQGGAFGNREEFINKLVKSM 242

>sp|Q9LHP1|RL73_ARATH 60S ribosomal protein L7-3
          Length = 244

 Score =  147 bits (370), Expect = 4e-35
 Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 3/237 (1%)
 Frame = +1

Query: 28  IKETVLKRRKTANRDVTRQQLEKSRNVRMQARKRRSLIKTSAAFIIDAKKRHYDNKRIKN 207
           + E+VLK+RK        ++ E     +  A KR+ +   +  +  + +++  +  ++K 
Sbjct: 10  VPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKERELIQLKR 69

Query: 208 -AKRSTPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVKVDQRMLRKL 384
            AK     Y+    KL  +IR+ G N +  KT+ I + L+L      VF+KV++  +  L
Sbjct: 70  EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINML 129

Query: 385 NIIKPYITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNVICVADIVHE 564
             ++PY+T+GYP+ + V +L+ KRG+  ++ +RT + DN  +++ LG++ +ICV D++HE
Sbjct: 130 RRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHE 189

Query: 565 LVNVGENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHL--STELGNRDLYINDLLKRM 729
           ++ VG +F   NNF+WPF+ L AP G  G+  KR H     + GNR+ +IN+L++RM
Sbjct: 190 IMTVGPHFKEANNFLWPFQ-LKAPLG--GMKKKRNHYVEGGDAGNRENFINELVRRM 243

>sp|P11874|RL7_DICDI 60S ribosomal protein L7
          Length = 245

 Score =  146 bits (369), Expect = 5e-35
 Identities = 81/244 (33%), Positives = 137/244 (56%), Gaps = 4/244 (1%)
 Frame = +1

Query: 10  APKLETIKETVLKRRKTANR---DVTRQQLEKSRNVRMQARKRRSLIKTSAAFIIDAKKR 180
           A K   + E++LK+R T+ +   DV +  L +++ +R  +R      K +  ++ +  K 
Sbjct: 5   ATKTAPVPESILKKRATSQKKAXDVAK--LGRAQQLR-NSRLNSVYFKRAEKYVSEYHKT 61

Query: 181 HYDNKRIKN-AKRSTPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVK 357
             +  R+   AK S   Y+P   K+  VIR+ G NG+S K   + K L+L   N  VFVK
Sbjct: 62  EREAIRLNRIAKNSGTFYVPPAAKVAFVIRIRGINGVSPKPRKVLKLLRLLQLNNGVFVK 121

Query: 358 VDQRMLRKLNIIKPYITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNV 537
           +++  +  L +++PY+ +G+P+ + + +L+ KRG   ID +R  +  N  +EK LG++ +
Sbjct: 122 LNKASINMLKLVEPYVAYGFPNLKSIKELIYKRGHLKIDGQRIPLTSNDMVEKQLGKFGI 181

Query: 538 ICVADIVHELVNVGENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHLSTELGNRDLYINDL 717
           ICV DI+HE+   G++F  VNN +WPFK L+ P G   +         + GNR+  IN+L
Sbjct: 182 ICVEDIIHEITTCGKHFKQVNNSLWPFK-LNCPRGGFNMKKTPFLQGGDAGNREHLINNL 240

Query: 718 LKRM 729
           + RM
Sbjct: 241 IHRM 244

>sp|P32100|RL7_DROME 60S ribosomal protein L7
          Length = 252

 Score =  146 bits (368), Expect = 7e-35
 Identities = 85/250 (34%), Positives = 139/250 (55%), Gaps = 7/250 (2%)
 Frame = +1

Query: 4   PAAPKLETIKETVLKRRKTANRDVTRQQLEKSRNVRMQA----RKRRSLIKTSAAF--II 165
           PAA KL  + E+ LK  K   + ++++  E  R ++  A    RK+ +L++        I
Sbjct: 9   PAAKKLPAVPESKLKFSK---KQISKRVAESKRRLKKAAVIALRKKENLVRAEKYQNEYI 65

Query: 166 DAKKRHYDNKRIKNAKRSTPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQA 345
            A++R    +R+  AK+    Y+P   KL  V+R+ G N ++ K   + +  +L   N  
Sbjct: 66  KAEQREIKLRRL--AKKRNQFYVPAEAKLAFVVRIRGINKVAPKVRKVLQLFRLRQINNG 123

Query: 346 VFVKVDQRMLRKLNIIKPYITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLG 525
           VF+K+++  +  L I +PYITWGYP+ + V +L+ KRG+   + +R  I DN  IE+ L 
Sbjct: 124 VFIKLNKATINMLRIAEPYITWGYPNLKSVRELIYKRGFVKHNRQRVPITDNFVIERKLR 183

Query: 526 E-YNVICVADIVHELVNVGENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHLSTELGNRDL 702
           + + + CV D+VHE+  VG NF   +NF+WPFKL +   GW    N   +   + GNR+ 
Sbjct: 184 QAHQIQCVEDLVHEIFTVGPNFKYASNFLWPFKLNTPTGGWRKKANHYVN-GGDFGNRED 242

Query: 703 YINDLLKRMI 732
            IN LL++M+
Sbjct: 243 QINRLLRKMV 252

>sp|Q6C603|RL7_YARLI 60S ribosomal protein L7
          Length = 250

 Score =  146 bits (368), Expect = 7e-35
 Identities = 78/235 (33%), Positives = 131/235 (55%), Gaps = 3/235 (1%)
 Frame = +1

Query: 28  IKETVLKRRKTANRDVTRQQLEKSRNVRMQARKRRSLIKTSAAFIIDAKKRHYDNKRIKN 207
           + ET+LK+RK A++    ++   +      A K + +   +  ++ + ++   +  R++ 
Sbjct: 14  VPETLLKKRKNADQIRAAKEAAAAEKKAANAEKDKVIFSRAEKYVKEYREAEREQIRLRR 73

Query: 208 -AKRSTPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVKVDQRMLRKL 384
            AK +   Y+P  PKL  VIR+ G + ++ K   + + L+L   N  VFV++ +     L
Sbjct: 74  EAKLNGTFYVPAEPKLVFVIRIKGISKMAPKPRKVLQLLRLHQINNGVFVRITKATAELL 133

Query: 385 NIIKPYITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNVICVADIVHE 564
            I++PYI +GYP+   V  L+ KRG+  ++ +R  + DN  IE+ LG+Y +IC+ D++HE
Sbjct: 134 RIVEPYIAFGYPNLASVRQLVYKRGYGKVNKQRIPLSDNAIIEEALGKYGIICMEDLIHE 193

Query: 565 LVNVGENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHL--STELGNRDLYINDLLK 723
           +  VG  F   +NF+WPFKL +   GW GV  K KH       GNR+  IN L+K
Sbjct: 194 IYTVGPAFKQASNFLWPFKLSNPSGGW-GVRRKFKHYIEGGSTGNREENINALIK 247

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,032,332
Number of Sequences: 369166
Number of extensions: 1678835
Number of successful extensions: 4172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4142
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6970118400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00446

  1. Dr_sW_011_L24
  2. Dr_sW_003_L18