Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_L24
(753 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O01802|RL7_CAEEL 60S ribosomal protein L7 159 8e-39
sp|Q58DT1|RL7_BOVIN 60S ribosomal protein L7 157 2e-38
sp|P18124|RL7_HUMAN 60S ribosomal protein L7 157 4e-38
sp|P14148|RL7_MOUSE 60S ribosomal protein L7 154 3e-37
sp|P05426|RL7_RAT 60S ribosomal protein L7 153 5e-37
sp|Q755A7|RL7_ASHGO 60S ribosomal protein L7 147 3e-35
sp|Q9LHP1|RL73_ARATH 60S ribosomal protein L7-3 147 4e-35
sp|P11874|RL7_DICDI 60S ribosomal protein L7 146 5e-35
sp|P32100|RL7_DROME 60S ribosomal protein L7 146 7e-35
sp|Q6C603|RL7_YARLI 60S ribosomal protein L7 146 7e-35
>sp|O01802|RL7_CAEEL 60S ribosomal protein L7
Length = 244
Score = 159 bits (402), Expect = 8e-39
Identities = 85/242 (35%), Positives = 130/242 (53%), Gaps = 3/242 (1%)
Frame = +1
Query: 16 KLETIKETVLKRRKTANRDVTRQQLEKSRNVRMQARKRRSLIKTSAAFIIDAKKRHYDNK 195
K+ + ETVLKRRK T+ K K+ K + ++ + + +
Sbjct: 6 KVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKEGL 65
Query: 196 RIKN-AKRSTPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVKVDQRM 372
R+K A+ Y+P K+ V+R+ G N L K + L+L N VFVK+++
Sbjct: 66 RLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKAT 125
Query: 373 LRKLNIIKPYITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNVICVAD 552
L L II+PY+ WGYP+ + + DLL KRG+A +D R I DN +E+ LG++N+IC+ D
Sbjct: 126 LPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLED 185
Query: 553 IVHELVNVGENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHL--STELGNRDLYINDLLKR 726
+ HE+ VG +F NF+WPFKL + GW K H + GNR+ IN+LL++
Sbjct: 186 LAHEIATVGPHFKEATNFLWPFKLNNPTGGWT---KKTNHFVEGGDFGNREDQINNLLRK 242
Query: 727 MI 732
M+
Sbjct: 243 MV 244
>sp|Q58DT1|RL7_BOVIN 60S ribosomal protein L7
Length = 248
Score = 157 bits (398), Expect = 2e-38
Identities = 87/242 (35%), Positives = 140/242 (57%), Gaps = 4/242 (1%)
Frame = +1
Query: 16 KLETIKETVLKRRKTANRDVTRQQLEKSRNVRMQARKRRSLIKTSAAFIIDAKKRHY--D 189
K+ + ET+ K+RK ++ ++L K +M + RR LI A ++ Y +
Sbjct: 10 KVPAVPETLKKKRKNF-AELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTE 68
Query: 190 NKRIKNAKRSTPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVKVDQR 369
+ + A+++ Y+P PKL VIR+ G NG+S K + + L+L FVK+++
Sbjct: 69 IRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKA 128
Query: 370 MLRKLNIIKPYITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNVICVA 549
+ L I++PYI WGYP+ + V++L+ KRG+ I+ KR + DN I + LG+Y +IC+
Sbjct: 129 SINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICME 188
Query: 550 DIVHELVNVGENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHL--STELGNRDLYINDLLK 723
D++HE+ VG+ F NNF+WPFK LS+P G G+ K H + GNR+ IN L++
Sbjct: 189 DLIHEIYTVGKRFKEANNFLWPFK-LSSPRG--GMKKKTTHFVEGGDAGNREDQINRLIR 245
Query: 724 RM 729
RM
Sbjct: 246 RM 247
>sp|P18124|RL7_HUMAN 60S ribosomal protein L7
Length = 248
Score = 157 bits (396), Expect = 4e-38
Identities = 92/246 (37%), Positives = 140/246 (56%), Gaps = 4/246 (1%)
Frame = +1
Query: 4 PAAPKLETIKETVLKRRKTANRDVTRQQLEKSRNVRMQARKRRSLIKTSAAFIIDAKKRH 183
PA P ET+K+ KRR A + R L K +M + RR LI A ++
Sbjct: 12 PAVP--ETLKK---KRRNFAELKIKR--LRKKFAQKMLRKARRKLIYEKAKHYHKEYRQM 64
Query: 184 Y--DNKRIKNAKRSTPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVK 357
Y + + + A+++ Y+P PKL VIR+ G NG+S K + + L+L FVK
Sbjct: 65 YRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVK 124
Query: 358 VDQRMLRKLNIIKPYITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNV 537
+++ + L I++PYI WGYP+ + V++L+ KRG+ I+ KR + DN I + LG+Y +
Sbjct: 125 LNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGI 184
Query: 538 ICVADIVHELVNVGENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHL--STELGNRDLYIN 711
IC+ D++HE+ VG+ F NNF+WPFK LS+P G G+ K H + GNR+ IN
Sbjct: 185 ICMEDLIHEIYTVGKRFKEANNFLWPFK-LSSPRG--GMKKKTTHFVEGGDAGNREDQIN 241
Query: 712 DLLKRM 729
L++RM
Sbjct: 242 RLIRRM 247
>sp|P14148|RL7_MOUSE 60S ribosomal protein L7
Length = 270
Score = 154 bits (388), Expect = 3e-37
Identities = 91/246 (36%), Positives = 140/246 (56%), Gaps = 4/246 (1%)
Frame = +1
Query: 4 PAAPKLETIKETVLKRRKTANRDVTRQQLEKSRNVRMQARKRRSLIKTSAAFIIDAKKRH 183
PA P ET+K+ KRR A V R L K ++ + RR LI A ++
Sbjct: 34 PAVP--ETLKK---KRRNFAELKVKR--LRKKFALKTLRKARRKLIYEKAKHYHKEYRQM 86
Query: 184 Y--DNKRIKNAKRSTPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVK 357
Y + + + A+++ Y+P PKL VIR+ G NG+S K + + L+L FVK
Sbjct: 87 YRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVK 146
Query: 358 VDQRMLRKLNIIKPYITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNV 537
+++ + L I++PYI WGYP+ + V++L+ KRG+ I+ KR + DN I + LG++ +
Sbjct: 147 LNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGI 206
Query: 538 ICVADIVHELVNVGENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHL--STELGNRDLYIN 711
IC+ D++HE+ VG+ F NNF+WPFK LS+P G G+ K H + GNR+ IN
Sbjct: 207 ICMEDLIHEIYTVGKRFKEANNFLWPFK-LSSPRG--GMKKKTTHFVEGGDAGNREDQIN 263
Query: 712 DLLKRM 729
L++RM
Sbjct: 264 RLIRRM 269
>sp|P05426|RL7_RAT 60S ribosomal protein L7
Length = 260
Score = 153 bits (386), Expect = 5e-37
Identities = 90/246 (36%), Positives = 140/246 (56%), Gaps = 4/246 (1%)
Frame = +1
Query: 4 PAAPKLETIKETVLKRRKTANRDVTRQQLEKSRNVRMQARKRRSLIKTSAAFIIDAKKRH 183
PA P ET+K+ KRR A V R L K ++ + RR LI A ++
Sbjct: 24 PAVP--ETLKK---KRRNFAELKVKR--LRKKFALKTLRKARRKLIYEKAKHYHKEYRQM 76
Query: 184 Y--DNKRIKNAKRSTPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVK 357
Y + + + A+++ Y+P PKL VIR+ G NG+S K + + L+L FVK
Sbjct: 77 YRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVK 136
Query: 358 VDQRMLRKLNIIKPYITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNV 537
+++ + L I++PYI WGYP+ + V++L+ KRG+ I+ KR + DN + + LG++ +
Sbjct: 137 LNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLVARSLGKFGI 196
Query: 538 ICVADIVHELVNVGENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHL--STELGNRDLYIN 711
IC+ D++HE+ VG+ F NNF+WPFK LS+P G G+ K H + GNR+ IN
Sbjct: 197 ICMEDLIHEIYTVGKRFKEANNFLWPFK-LSSPRG--GMKKKTTHFVEGGDAGNREDQIN 253
Query: 712 DLLKRM 729
L++RM
Sbjct: 254 RLIRRM 259
>sp|Q755A7|RL7_ASHGO 60S ribosomal protein L7
Length = 243
Score = 147 bits (371), Expect = 3e-35
Identities = 81/237 (34%), Positives = 132/237 (55%), Gaps = 5/237 (2%)
Frame = +1
Query: 34 ETVLKRRKTANRDVTRQQLEKSRNVRMQARKRRSLIKTSAAFIID---AKKRHYDNKRIK 204
E+ LK+ K + + E++ KR ++++ +AA+ + A++ KR
Sbjct: 9 ESQLKKSKAQQKSAEQVAAERAARKAANKEKRAAILERNAAYHKEYETAERAVIQAKR-- 66
Query: 205 NAKRSTPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVKVDQRMLRKL 384
AK + Y+ PKL VIR+ G N ++ K + + L+L+ N VFVKV + L
Sbjct: 67 EAKANGSYYVESQPKLVFVIRIKGINKIAPKPRKVLQLLRLNQINSGVFVKVTKATTELL 126
Query: 385 NIIKPYITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNVICVADIVHE 564
+++PY+ +GYPS + L+ KRG+ I+ +R + +N +E +LG+Y +I V D++HE
Sbjct: 127 RLVEPYVAYGYPSYSTIRQLVYKRGYGKINKQRIALSENSIVEANLGKYGIISVDDLIHE 186
Query: 565 LVNVGENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHL--STELGNRDLYINDLLKRM 729
++ VG +F NNF+WPFKL + GW GV K KH GNR+ +IN L+K M
Sbjct: 187 IITVGPHFKQANNFLWPFKLSNPSGGW-GVPRKFKHFIQGGAFGNREEFINKLVKSM 242
>sp|Q9LHP1|RL73_ARATH 60S ribosomal protein L7-3
Length = 244
Score = 147 bits (370), Expect = 4e-35
Identities = 78/237 (32%), Positives = 139/237 (58%), Gaps = 3/237 (1%)
Frame = +1
Query: 28 IKETVLKRRKTANRDVTRQQLEKSRNVRMQARKRRSLIKTSAAFIIDAKKRHYDNKRIKN 207
+ E+VLK+RK ++ E + A KR+ + + + + +++ + ++K
Sbjct: 10 VPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKERELIQLKR 69
Query: 208 -AKRSTPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVKVDQRMLRKL 384
AK Y+ KL +IR+ G N + KT+ I + L+L VF+KV++ + L
Sbjct: 70 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINML 129
Query: 385 NIIKPYITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNVICVADIVHE 564
++PY+T+GYP+ + V +L+ KRG+ ++ +RT + DN +++ LG++ +ICV D++HE
Sbjct: 130 RRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHE 189
Query: 565 LVNVGENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHL--STELGNRDLYINDLLKRM 729
++ VG +F NNF+WPF+ L AP G G+ KR H + GNR+ +IN+L++RM
Sbjct: 190 IMTVGPHFKEANNFLWPFQ-LKAPLG--GMKKKRNHYVEGGDAGNRENFINELVRRM 243
>sp|P11874|RL7_DICDI 60S ribosomal protein L7
Length = 245
Score = 146 bits (369), Expect = 5e-35
Identities = 81/244 (33%), Positives = 137/244 (56%), Gaps = 4/244 (1%)
Frame = +1
Query: 10 APKLETIKETVLKRRKTANR---DVTRQQLEKSRNVRMQARKRRSLIKTSAAFIIDAKKR 180
A K + E++LK+R T+ + DV + L +++ +R +R K + ++ + K
Sbjct: 5 ATKTAPVPESILKKRATSQKKAXDVAK--LGRAQQLR-NSRLNSVYFKRAEKYVSEYHKT 61
Query: 181 HYDNKRIKN-AKRSTPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVK 357
+ R+ AK S Y+P K+ VIR+ G NG+S K + K L+L N VFVK
Sbjct: 62 EREAIRLNRIAKNSGTFYVPPAAKVAFVIRIRGINGVSPKPRKVLKLLRLLQLNNGVFVK 121
Query: 358 VDQRMLRKLNIIKPYITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNV 537
+++ + L +++PY+ +G+P+ + + +L+ KRG ID +R + N +EK LG++ +
Sbjct: 122 LNKASINMLKLVEPYVAYGFPNLKSIKELIYKRGHLKIDGQRIPLTSNDMVEKQLGKFGI 181
Query: 538 ICVADIVHELVNVGENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHLSTELGNRDLYINDL 717
ICV DI+HE+ G++F VNN +WPFK L+ P G + + GNR+ IN+L
Sbjct: 182 ICVEDIIHEITTCGKHFKQVNNSLWPFK-LNCPRGGFNMKKTPFLQGGDAGNREHLINNL 240
Query: 718 LKRM 729
+ RM
Sbjct: 241 IHRM 244
>sp|P32100|RL7_DROME 60S ribosomal protein L7
Length = 252
Score = 146 bits (368), Expect = 7e-35
Identities = 85/250 (34%), Positives = 139/250 (55%), Gaps = 7/250 (2%)
Frame = +1
Query: 4 PAAPKLETIKETVLKRRKTANRDVTRQQLEKSRNVRMQA----RKRRSLIKTSAAF--II 165
PAA KL + E+ LK K + ++++ E R ++ A RK+ +L++ I
Sbjct: 9 PAAKKLPAVPESKLKFSK---KQISKRVAESKRRLKKAAVIALRKKENLVRAEKYQNEYI 65
Query: 166 DAKKRHYDNKRIKNAKRSTPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQA 345
A++R +R+ AK+ Y+P KL V+R+ G N ++ K + + +L N
Sbjct: 66 KAEQREIKLRRL--AKKRNQFYVPAEAKLAFVVRIRGINKVAPKVRKVLQLFRLRQINNG 123
Query: 346 VFVKVDQRMLRKLNIIKPYITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLG 525
VF+K+++ + L I +PYITWGYP+ + V +L+ KRG+ + +R I DN IE+ L
Sbjct: 124 VFIKLNKATINMLRIAEPYITWGYPNLKSVRELIYKRGFVKHNRQRVPITDNFVIERKLR 183
Query: 526 E-YNVICVADIVHELVNVGENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHLSTELGNRDL 702
+ + + CV D+VHE+ VG NF +NF+WPFKL + GW N + + GNR+
Sbjct: 184 QAHQIQCVEDLVHEIFTVGPNFKYASNFLWPFKLNTPTGGWRKKANHYVN-GGDFGNRED 242
Query: 703 YINDLLKRMI 732
IN LL++M+
Sbjct: 243 QINRLLRKMV 252
>sp|Q6C603|RL7_YARLI 60S ribosomal protein L7
Length = 250
Score = 146 bits (368), Expect = 7e-35
Identities = 78/235 (33%), Positives = 131/235 (55%), Gaps = 3/235 (1%)
Frame = +1
Query: 28 IKETVLKRRKTANRDVTRQQLEKSRNVRMQARKRRSLIKTSAAFIIDAKKRHYDNKRIKN 207
+ ET+LK+RK A++ ++ + A K + + + ++ + ++ + R++
Sbjct: 14 VPETLLKKRKNADQIRAAKEAAAAEKKAANAEKDKVIFSRAEKYVKEYREAEREQIRLRR 73
Query: 208 -AKRSTPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVKVDQRMLRKL 384
AK + Y+P PKL VIR+ G + ++ K + + L+L N VFV++ + L
Sbjct: 74 EAKLNGTFYVPAEPKLVFVIRIKGISKMAPKPRKVLQLLRLHQINNGVFVRITKATAELL 133
Query: 385 NIIKPYITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNVICVADIVHE 564
I++PYI +GYP+ V L+ KRG+ ++ +R + DN IE+ LG+Y +IC+ D++HE
Sbjct: 134 RIVEPYIAFGYPNLASVRQLVYKRGYGKVNKQRIPLSDNAIIEEALGKYGIICMEDLIHE 193
Query: 565 LVNVGENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHL--STELGNRDLYINDLLK 723
+ VG F +NF+WPFKL + GW GV K KH GNR+ IN L+K
Sbjct: 194 IYTVGPAFKQASNFLWPFKLSNPSGGW-GVRRKFKHYIEGGSTGNREENINALIK 247
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,097,162
Number of Sequences: 369166
Number of extensions: 1683976
Number of successful extensions: 4230
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4200
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6873311200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)