Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_L18
(718 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18124|RL7_HUMAN 60S ribosomal protein L7 154 3e-37
sp|Q58DT1|RL7_BOVIN 60S ribosomal protein L7 154 3e-37
sp|O01802|RL7_CAEEL 60S ribosomal protein L7 151 1e-36
sp|P14148|RL7_MOUSE 60S ribosomal protein L7 150 3e-36
sp|P05426|RL7_RAT 60S ribosomal protein L7 149 6e-36
sp|Q755A7|RL7_ASHGO 60S ribosomal protein L7 145 8e-35
sp|O60143|RL7C_SCHPO 60S ribosomal protein L7-C 143 5e-34
sp|Q9LHP1|RL73_ARATH 60S ribosomal protein L7-3 142 9e-34
sp|Q12213|RL7B_YEAST 60S ribosomal protein L7-B (L6B) (YL8B) 142 9e-34
sp|P05737|RL7A_YEAST 60S ribosomal protein L7-A (L6A) (YL8A... 141 2e-33
>sp|P18124|RL7_HUMAN 60S ribosomal protein L7
Length = 248
Score = 154 bits (388), Expect = 3e-37
Identities = 83/233 (35%), Positives = 135/233 (57%), Gaps = 4/233 (1%)
Frame = +2
Query: 2 LKRRKTANRDVTRQQLEKSRNVRMQARKRRSLIKTSAAFIIDAKKRHY--DNKRIKNAKR 175
LK+++ ++ ++L K +M + RR LI A ++ Y + + + A++
Sbjct: 18 LKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARK 77
Query: 176 STPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVKVDQRMLRKLNIIK 355
+ Y+P PKL VIR+ G NG+S K + + L+L FVK+++ + L I++
Sbjct: 78 AGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVE 137
Query: 356 PYITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNVICVADIVHELVNV 535
PYI WGYP+ + V++L+ KRG+ I+ KR + DN I + LG+Y +IC+ D++HE+ V
Sbjct: 138 PYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTV 197
Query: 536 GENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHL--STELGNRDLYINDLLKRM 688
G+ F NNF+WPFK LS+P G G+ K H + GNR+ IN L++RM
Sbjct: 198 GKRFKEANNFLWPFK-LSSPRG--GMKKKTTHFVEGGDAGNREDQINRLIRRM 247
>sp|Q58DT1|RL7_BOVIN 60S ribosomal protein L7
Length = 248
Score = 154 bits (388), Expect = 3e-37
Identities = 83/233 (35%), Positives = 135/233 (57%), Gaps = 4/233 (1%)
Frame = +2
Query: 2 LKRRKTANRDVTRQQLEKSRNVRMQARKRRSLIKTSAAFIIDAKKRHY--DNKRIKNAKR 175
LK+++ ++ ++L K +M + RR LI A ++ Y + + + A++
Sbjct: 18 LKKKRKNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARK 77
Query: 176 STPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVKVDQRMLRKLNIIK 355
+ Y+P PKL VIR+ G NG+S K + + L+L FVK+++ + L I++
Sbjct: 78 AGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVE 137
Query: 356 PYITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNVICVADIVHELVNV 535
PYI WGYP+ + V++L+ KRG+ I+ KR + DN I + LG+Y +IC+ D++HE+ V
Sbjct: 138 PYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTV 197
Query: 536 GENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHL--STELGNRDLYINDLLKRM 688
G+ F NNF+WPFK LS+P G G+ K H + GNR+ IN L++RM
Sbjct: 198 GKRFKEANNFLWPFK-LSSPRG--GMKKKTTHFVEGGDAGNREDQINRLIRRM 247
>sp|O01802|RL7_CAEEL 60S ribosomal protein L7
Length = 244
Score = 151 bits (382), Expect = 1e-36
Identities = 81/233 (34%), Positives = 124/233 (53%), Gaps = 3/233 (1%)
Frame = +2
Query: 2 LKRRKTANRDVTRQQLEKSRNVRMQARKRRSLIKTSAAFIIDAKKRHYDNKRIKN-AKRS 178
LKRRK T+ K K+ K + ++ + + + R+K A+
Sbjct: 15 LKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKEGLRLKREAEAK 74
Query: 179 TPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVKVDQRMLRKLNIIKP 358
Y+P K+ V+R+ G N L K + L+L N VFVK+++ L L II+P
Sbjct: 75 GDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKATLPLLRIIEP 134
Query: 359 YITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNVICVADIVHELVNVG 538
Y+ WGYP+ + + DLL KRG+A +D R I DN +E+ LG++N+IC+ D+ HE+ VG
Sbjct: 135 YVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLEDLAHEIATVG 194
Query: 539 ENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHL--STELGNRDLYINDLLKRMI 691
+F NF+WPFKL + GW K H + GNR+ IN+LL++M+
Sbjct: 195 PHFKEATNFLWPFKLNNPTGGWT---KKTNHFVEGGDFGNREDQINNLLRKMV 244
>sp|P14148|RL7_MOUSE 60S ribosomal protein L7
Length = 270
Score = 150 bits (379), Expect = 3e-36
Identities = 85/232 (36%), Positives = 132/232 (56%), Gaps = 4/232 (1%)
Frame = +2
Query: 5 KRRKTANRDVTRQQLEKSRNVRMQARKRRSLIKTSAAFIIDAKKRHY--DNKRIKNAKRS 178
KRR A V R L K ++ + RR LI A ++ Y + + + A+++
Sbjct: 43 KRRNFAELKVKR--LRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKA 100
Query: 179 TPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVKVDQRMLRKLNIIKP 358
Y+P PKL VIR+ G NG+S K + + L+L FVK+++ + L I++P
Sbjct: 101 GNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEP 160
Query: 359 YITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNVICVADIVHELVNVG 538
YI WGYP+ + V++L+ KRG+ I+ KR + DN I + LG++ +IC+ D++HE+ VG
Sbjct: 161 YIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVG 220
Query: 539 ENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHL--STELGNRDLYINDLLKRM 688
+ F NNF+WPFK LS+P G G+ K H + GNR+ IN L++RM
Sbjct: 221 KRFKEANNFLWPFK-LSSPRG--GMKKKTTHFVEGGDAGNREDQINRLIRRM 269
>sp|P05426|RL7_RAT 60S ribosomal protein L7
Length = 260
Score = 149 bits (377), Expect = 6e-36
Identities = 84/232 (36%), Positives = 132/232 (56%), Gaps = 4/232 (1%)
Frame = +2
Query: 5 KRRKTANRDVTRQQLEKSRNVRMQARKRRSLIKTSAAFIIDAKKRHY--DNKRIKNAKRS 178
KRR A V R L K ++ + RR LI A ++ Y + + + A+++
Sbjct: 33 KRRNFAELKVKR--LRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKA 90
Query: 179 TPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVKVDQRMLRKLNIIKP 358
Y+P PKL VIR+ G NG+S K + + L+L FVK+++ + L I++P
Sbjct: 91 GNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEP 150
Query: 359 YITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNVICVADIVHELVNVG 538
YI WGYP+ + V++L+ KRG+ I+ KR + DN + + LG++ +IC+ D++HE+ VG
Sbjct: 151 YIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLVARSLGKFGIICMEDLIHEIYTVG 210
Query: 539 ENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHL--STELGNRDLYINDLLKRM 688
+ F NNF+WPFK LS+P G G+ K H + GNR+ IN L++RM
Sbjct: 211 KRFKEANNFLWPFK-LSSPRG--GMKKKTTHFVEGGDAGNREDQINRLIRRM 259
>sp|Q755A7|RL7_ASHGO 60S ribosomal protein L7
Length = 243
Score = 145 bits (367), Expect = 8e-35
Identities = 80/234 (34%), Positives = 130/234 (55%), Gaps = 5/234 (2%)
Frame = +2
Query: 2 LKRRKTANRDVTRQQLEKSRNVRMQARKRRSLIKTSAAFIID---AKKRHYDNKRIKNAK 172
LK+ K + + E++ KR ++++ +AA+ + A++ KR AK
Sbjct: 12 LKKSKAQQKSAEQVAAERAARKAANKEKRAAILERNAAYHKEYETAERAVIQAKR--EAK 69
Query: 173 RSTPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVKVDQRMLRKLNII 352
+ Y+ PKL VIR+ G N ++ K + + L+L+ N VFVKV + L ++
Sbjct: 70 ANGSYYVESQPKLVFVIRIKGINKIAPKPRKVLQLLRLNQINSGVFVKVTKATTELLRLV 129
Query: 353 KPYITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNVICVADIVHELVN 532
+PY+ +GYPS + L+ KRG+ I+ +R + +N +E +LG+Y +I V D++HE++
Sbjct: 130 EPYVAYGYPSYSTIRQLVYKRGYGKINKQRIALSENSIVEANLGKYGIISVDDLIHEIIT 189
Query: 533 VGENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHL--STELGNRDLYINDLLKRM 688
VG +F NNF+WPFKL + GW GV K KH GNR+ +IN L+K M
Sbjct: 190 VGPHFKQANNFLWPFKLSNPSGGW-GVPRKFKHFIQGGAFGNREEFINKLVKSM 242
>sp|O60143|RL7C_SCHPO 60S ribosomal protein L7-C
Length = 251
Score = 143 bits (360), Expect = 5e-34
Identities = 79/235 (33%), Positives = 131/235 (55%), Gaps = 5/235 (2%)
Frame = +2
Query: 2 LKRRKTANRDVTRQQLEKSRNVRMQARKRRSLIKTSAAFIIDAKKRHYDNKRI---KNAK 172
LK++KT + ++ + Q +KR + K + ++ DA+ R + ++I + A+
Sbjct: 21 LKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESY--DAEYRKAEREQIELGRKAR 78
Query: 173 RSTPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVKVDQRMLRKLNII 352
Y+PD KL VIR+ G N + K I + L+L N VFVK ++ L ++
Sbjct: 79 AEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNKATKEMLQVV 138
Query: 353 KPYITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNVICVADIVHELVN 532
+PY+T+G P+ + V +LL KRG+ ++ +R + DN IE LG+Y+++ + D++HE+
Sbjct: 139 EPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEIYT 198
Query: 533 VGENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHL--STELGNRDLYINDLLKRMI 691
VG NF NFIWPF+L S GW K KH + G RD +IN L+++M+
Sbjct: 199 VGPNFKQAANFIWPFQLSSPLGGWR--DRKFKHFIEGGDAGKRDEHINSLVRKML 251
>sp|Q9LHP1|RL73_ARATH 60S ribosomal protein L7-3
Length = 244
Score = 142 bits (358), Expect = 9e-34
Identities = 76/232 (32%), Positives = 135/232 (58%), Gaps = 3/232 (1%)
Frame = +2
Query: 2 LKRRKTANRDVTRQQLEKSRNVRMQARKRRSLIKTSAAFIIDAKKRHYDNKRIKN-AKRS 178
LK+RK ++ E + A KR+ + + + + +++ + ++K AK
Sbjct: 15 LKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKERELIQLKREAKLK 74
Query: 179 TPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVKVDQRMLRKLNIIKP 358
Y+ KL +IR+ G N + KT+ I + L+L VF+KV++ + L ++P
Sbjct: 75 GGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEP 134
Query: 359 YITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNVICVADIVHELVNVG 538
Y+T+GYP+ + V +L+ KRG+ ++ +RT + DN +++ LG++ +ICV D++HE++ VG
Sbjct: 135 YVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVG 194
Query: 539 ENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHL--STELGNRDLYINDLLKRM 688
+F NNF+WPF+ L AP G G+ KR H + GNR+ +IN+L++RM
Sbjct: 195 PHFKEANNFLWPFQ-LKAPLG--GMKKKRNHYVEGGDAGNRENFINELVRRM 243
>sp|Q12213|RL7B_YEAST 60S ribosomal protein L7-B (L6B) (YL8B)
Length = 244
Score = 142 bits (358), Expect = 9e-34
Identities = 82/233 (35%), Positives = 129/233 (55%), Gaps = 7/233 (3%)
Frame = +2
Query: 11 RKTANRDVTRQQLEKSRNVRMQARK--RRSLIKTSAAFIID---AKKRHYDNKRIKNAKR 175
+KT + T +Q+ R R A K R +++ +AA+ + A++ KR +AK
Sbjct: 14 KKTKAQQKTAEQIAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKR--DAKA 71
Query: 176 STPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVKVDQRMLRKLNIIK 355
+ Y+ KL V+R+ G N + K + + L+L N FVKV + L L +I+
Sbjct: 72 AGSYYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIE 131
Query: 356 PYITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNVICVADIVHELVNV 535
PY+ +GYPS + L+ KRG+ I+ +R + DN IE +LG+Y ++ + D++HE++ V
Sbjct: 132 PYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITV 191
Query: 536 GENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHL--STELGNRDLYINDLLKRM 688
G +F NNF+WPFKL + GW GV K KH GNR+ +IN L+K M
Sbjct: 192 GPHFKQANNFLWPFKLSNPSGGW-GVPRKFKHFIQGGSFGNREEFINKLVKAM 243
>sp|P05737|RL7A_YEAST 60S ribosomal protein L7-A (L6A) (YL8A) (RP11)
Length = 244
Score = 141 bits (355), Expect = 2e-33
Identities = 79/234 (33%), Positives = 127/234 (54%), Gaps = 5/234 (2%)
Frame = +2
Query: 2 LKRRKTANRDVTRQQLEKSRNVRMQARKRRSLIKTSAAFIID---AKKRHYDNKRIKNAK 172
LK+ K + + E++ KR +++ +AA+ + A++ KR +AK
Sbjct: 13 LKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKR--DAK 70
Query: 173 RSTPIYLPDTPKLGVVIRLGGFNGLSVKTENIFKSLKLDTFNQAVFVKVDQRMLRKLNII 352
+ Y+ KL V+R+ G N + K + + L+L N FVKV + L L +I
Sbjct: 71 AAGSYYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLI 130
Query: 353 KPYITWGYPSAEIVSDLLGKRGWANIDDKRTRIVDNVQIEKHLGEYNVICVADIVHELVN 532
+PY+ +GYPS + L+ KRG+ I+ +R + DN IE +LG+Y ++ + D++HE++
Sbjct: 131 EPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIIT 190
Query: 533 VGENFDVVNNFIWPFKLLSAPPGWLGVGNKRKHL--STELGNRDLYINDLLKRM 688
VG +F NNF+WPFKL + GW GV K KH GNR+ +IN L+K M
Sbjct: 191 VGPHFKQANNFLWPFKLSNPSGGW-GVPRKFKHFIQGGSFGNREEFINKLVKSM 243
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,034,526
Number of Sequences: 369166
Number of extensions: 1601533
Number of successful extensions: 3780
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3753
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6365071885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)