Planaria EST Database

DrC_00442

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00442
         (411 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P58375|RL30_SPOFR  60S ribosomal protein L30                   138   5e-33
sp|P58374|RL30_BRABE  60S ribosomal protein L30                   128   5e-30
sp|Q9UTP0|RL30B_SCHPO  60S ribosomal protein L30-2                127   9e-30
sp|O49884|RL30_LUPLU  60S ribosomal protein L30                   124   1e-28
sp|P52808|RL30A_SCHPO  60S ribosomal protein L30-1 (L32)          123   1e-28
sp|P67883|RL30_CHICK  60S ribosomal protein L30 >gi|54039170...   123   2e-28
sp|P62890|RL30_RAT  60S ribosomal protein L30 >gi|51702806|s...   123   2e-28
sp|Q9LSA3|RL30_ARATH  60S ribosomal protein L30                   122   4e-28
sp|Q9SDG6|RL30_ORYSA  60S ribosomal protein L30                   120   1e-27
sp|O48558|RL30_MAIZE  60S ribosomal protein L30                   120   1e-27

>sp|P58375|RL30_SPOFR 60S ribosomal protein L30
          Length = 113

 Score =  138 bits (347), Expect = 5e-33
 Identities = 61/93 (65%), Positives = 80/93 (86%)
 Frame = +1

Query: 85  NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLARKGIH 264
           +I SRLAL +K+GKYCLG  QTLKT+R GKA+L+I+AKNA PL KS++EYY++LA+ G+H
Sbjct: 13  SINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYALLAKTGVH 72

Query: 265 HFDGNNTDLGTACGKLFKVSFMAITDPGDSDIL 363
           H+ GNN +LGTACGK ++V  +AITDPGDSDI+
Sbjct: 73  HYSGNNIELGTACGKYYRVCTLAITDPGDSDII 105

>sp|P58374|RL30_BRABE 60S ribosomal protein L30
          Length = 114

 Score =  128 bits (321), Expect = 5e-30
 Identities = 58/94 (61%), Positives = 76/94 (80%)
 Frame = +1

Query: 85  NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLARKGIH 264
           +I SRL L +K+GKY LGL +TLK +R GKA+LII+A N   L KS++EYY+MLA+ G+H
Sbjct: 10  SINSRLQLVMKSGKYVLGLKETLKVLRQGKAKLIIIANNTPALRKSEIEYYAMLAKTGVH 69

Query: 265 HFDGNNTDLGTACGKLFKVSFMAITDPGDSDILK 366
           H+ GNN +LGTACGK F+V  +AITDPGDSDI++
Sbjct: 70  HYSGNNIELGTACGKYFRVCTLAITDPGDSDIIR 103

>sp|Q9UTP0|RL30B_SCHPO 60S ribosomal protein L30-2
          Length = 117

 Score =  127 bits (319), Expect = 9e-30
 Identities = 59/92 (64%), Positives = 75/92 (81%)
 Frame = +1

Query: 88  IGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLARKGIHH 267
           I S+LAL +K+GKY LG   TLKT+RSGKA+LI++A NA PL KS++EYY+ML+R  +HH
Sbjct: 24  INSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLRKSELEYYAMLSRCSVHH 83

Query: 268 FDGNNTDLGTACGKLFKVSFMAITDPGDSDIL 363
           + GNN DLGTACGKLF+V  +A+ D GDSDIL
Sbjct: 84  YSGNNIDLGTACGKLFRVGVLAVIDAGDSDIL 115

>sp|O49884|RL30_LUPLU 60S ribosomal protein L30
          Length = 112

 Score =  124 bits (310), Expect = 1e-28
 Identities = 55/94 (58%), Positives = 75/94 (79%)
 Frame = +1

Query: 85  NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLARKGIH 264
           +I +RLAL +K+GKY LG    LK++RS K +LII+A N  PL KS++EYY+MLA+ G+H
Sbjct: 13  SINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVH 72

Query: 265 HFDGNNTDLGTACGKLFKVSFMAITDPGDSDILK 366
           H++GNN DLGTACGK ++V  ++I DPGDSDI+K
Sbjct: 73  HYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIK 106

>sp|P52808|RL30A_SCHPO 60S ribosomal protein L30-1 (L32)
          Length = 109

 Score =  123 bits (309), Expect = 1e-28
 Identities = 57/92 (61%), Positives = 74/92 (80%)
 Frame = +1

Query: 88  IGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLARKGIHH 267
           I ++LAL +K+GKY LG   TLKT+RSGKA+LI++A N  PL KS++EYY+ML++  +HH
Sbjct: 16  INAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPLRKSELEYYAMLSKANVHH 75

Query: 268 FDGNNTDLGTACGKLFKVSFMAITDPGDSDIL 363
           + G N DLGTACGKLF+V  +AITD GDSDIL
Sbjct: 76  YAGTNIDLGTACGKLFRVGVLAITDAGDSDIL 107

>sp|P67883|RL30_CHICK 60S ribosomal protein L30
 sp|P67884|RL30_OPHHA 60S ribosomal protein L30
          Length = 115

 Score =  123 bits (308), Expect = 2e-28
 Identities = 56/94 (59%), Positives = 74/94 (78%)
 Frame = +1

Query: 85  NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLARKGIH 264
           +I SRL L +K+GKY LG  QTLK IR GKA+L+I+A N   L KS++EYY+MLA+ G+H
Sbjct: 13  SINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVH 72

Query: 265 HFDGNNTDLGTACGKLFKVSFMAITDPGDSDILK 366
           H+ GNN +LGTACGK ++V  +AI DPGDSDI++
Sbjct: 73  HYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIR 106

>sp|P62890|RL30_RAT 60S ribosomal protein L30
 sp|P62889|RL30_MOUSE 60S ribosomal protein L30
 sp|P62888|RL30_HUMAN 60S ribosomal protein L30
 sp|Q76KA2|RL30_MACFA 60S ribosomal protein L30
          Length = 115

 Score =  123 bits (308), Expect = 2e-28
 Identities = 56/94 (59%), Positives = 74/94 (78%)
 Frame = +1

Query: 85  NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLARKGIH 264
           +I SRL L +K+GKY LG  QTLK IR GKA+L+I+A N   L KS++EYY+MLA+ G+H
Sbjct: 13  SINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVH 72

Query: 265 HFDGNNTDLGTACGKLFKVSFMAITDPGDSDILK 366
           H+ GNN +LGTACGK ++V  +AI DPGDSDI++
Sbjct: 73  HYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIR 106

>sp|Q9LSA3|RL30_ARATH 60S ribosomal protein L30
          Length = 112

 Score =  122 bits (305), Expect = 4e-28
 Identities = 54/93 (58%), Positives = 74/93 (79%)
 Frame = +1

Query: 88  IGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLARKGIHH 267
           I SRLAL +K+GKY LG    LK++RS K +LI+++ N  PL +S++EYY+MLA+ G+H 
Sbjct: 14  INSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEIEYYAMLAKVGVHR 73

Query: 268 FDGNNTDLGTACGKLFKVSFMAITDPGDSDILK 366
           ++GNN DLGTACGK F+VS ++I DPGDSDI+K
Sbjct: 74  YNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIK 106

>sp|Q9SDG6|RL30_ORYSA 60S ribosomal protein L30
          Length = 111

 Score =  120 bits (300), Expect = 1e-27
 Identities = 53/94 (56%), Positives = 73/94 (77%)
 Frame = +1

Query: 85  NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLARKGIH 264
           NI ++L L +K+GKY LG    L+T+R+ KA+L+I++ N  PL KS++EYY+MLA+  +H
Sbjct: 13  NINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKSEIEYYAMLAKVTVH 72

Query: 265 HFDGNNTDLGTACGKLFKVSFMAITDPGDSDILK 366
           HF GNN DLGTACGK F+V  ++I DPGDSDI+K
Sbjct: 73  HFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIK 106

>sp|O48558|RL30_MAIZE 60S ribosomal protein L30
          Length = 112

 Score =  120 bits (300), Expect = 1e-27
 Identities = 53/94 (56%), Positives = 73/94 (77%)
 Frame = +1

Query: 85  NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLARKGIH 264
           NI ++L L +K+GKY LG    L+T+R+ K++L+I+A N  PL KS++EYY+MLA+  +H
Sbjct: 13  NINNKLQLVMKSGKYTLGYKTVLRTLRNSKSKLVIIANNCPPLRKSEIEYYAMLAKVTVH 72

Query: 265 HFDGNNTDLGTACGKLFKVSFMAITDPGDSDILK 366
           HF GNN DLGTACGK F+V  ++I DPGDSDI+K
Sbjct: 73  HFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIK 106

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,183,019
Number of Sequences: 369166
Number of extensions: 665794
Number of successful extensions: 1800
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1793
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1852449955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00442

  1. Dr_sW_011_J23
  2. Dr_sW_020_H15