Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_J23
(411 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P58375|RL30_SPOFR 60S ribosomal protein L30 138 5e-33
sp|P58374|RL30_BRABE 60S ribosomal protein L30 128 5e-30
sp|Q9UTP0|RL30B_SCHPO 60S ribosomal protein L30-2 127 9e-30
sp|O49884|RL30_LUPLU 60S ribosomal protein L30 124 1e-28
sp|P52808|RL30A_SCHPO 60S ribosomal protein L30-1 (L32) 123 1e-28
sp|P67883|RL30_CHICK 60S ribosomal protein L30 >gi|54039170... 123 2e-28
sp|P62890|RL30_RAT 60S ribosomal protein L30 >gi|51702806|s... 123 2e-28
sp|Q9LSA3|RL30_ARATH 60S ribosomal protein L30 122 4e-28
sp|Q9SDG6|RL30_ORYSA 60S ribosomal protein L30 120 1e-27
sp|O48558|RL30_MAIZE 60S ribosomal protein L30 120 1e-27
>sp|P58375|RL30_SPOFR 60S ribosomal protein L30
Length = 113
Score = 138 bits (347), Expect = 5e-33
Identities = 61/93 (65%), Positives = 80/93 (86%)
Frame = +1
Query: 85 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLARKGIH 264
+I SRLAL +K+GKYCLG QTLKT+R GKA+L+I+AKNA PL KS++EYY++LA+ G+H
Sbjct: 13 SINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKSEIEYYALLAKTGVH 72
Query: 265 HFDGNNTDLGTACGKLFKVSFMAITDPGDSDIL 363
H+ GNN +LGTACGK ++V +AITDPGDSDI+
Sbjct: 73 HYSGNNIELGTACGKYYRVCTLAITDPGDSDII 105
>sp|P58374|RL30_BRABE 60S ribosomal protein L30
Length = 114
Score = 128 bits (321), Expect = 5e-30
Identities = 58/94 (61%), Positives = 76/94 (80%)
Frame = +1
Query: 85 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLARKGIH 264
+I SRL L +K+GKY LGL +TLK +R GKA+LII+A N L KS++EYY+MLA+ G+H
Sbjct: 10 SINSRLQLVMKSGKYVLGLKETLKVLRQGKAKLIIIANNTPALRKSEIEYYAMLAKTGVH 69
Query: 265 HFDGNNTDLGTACGKLFKVSFMAITDPGDSDILK 366
H+ GNN +LGTACGK F+V +AITDPGDSDI++
Sbjct: 70 HYSGNNIELGTACGKYFRVCTLAITDPGDSDIIR 103
>sp|Q9UTP0|RL30B_SCHPO 60S ribosomal protein L30-2
Length = 117
Score = 127 bits (319), Expect = 9e-30
Identities = 59/92 (64%), Positives = 75/92 (81%)
Frame = +1
Query: 88 IGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLARKGIHH 267
I S+LAL +K+GKY LG TLKT+RSGKA+LI++A NA PL KS++EYY+ML+R +HH
Sbjct: 24 INSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLRKSELEYYAMLSRCSVHH 83
Query: 268 FDGNNTDLGTACGKLFKVSFMAITDPGDSDIL 363
+ GNN DLGTACGKLF+V +A+ D GDSDIL
Sbjct: 84 YSGNNIDLGTACGKLFRVGVLAVIDAGDSDIL 115
>sp|O49884|RL30_LUPLU 60S ribosomal protein L30
Length = 112
Score = 124 bits (310), Expect = 1e-28
Identities = 55/94 (58%), Positives = 75/94 (79%)
Frame = +1
Query: 85 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLARKGIH 264
+I +RLAL +K+GKY LG LK++RS K +LII+A N PL KS++EYY+MLA+ G+H
Sbjct: 13 SINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVH 72
Query: 265 HFDGNNTDLGTACGKLFKVSFMAITDPGDSDILK 366
H++GNN DLGTACGK ++V ++I DPGDSDI+K
Sbjct: 73 HYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIK 106
>sp|P52808|RL30A_SCHPO 60S ribosomal protein L30-1 (L32)
Length = 109
Score = 123 bits (309), Expect = 1e-28
Identities = 57/92 (61%), Positives = 74/92 (80%)
Frame = +1
Query: 88 IGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLARKGIHH 267
I ++LAL +K+GKY LG TLKT+RSGKA+LI++A N PL KS++EYY+ML++ +HH
Sbjct: 16 INAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPLRKSELEYYAMLSKANVHH 75
Query: 268 FDGNNTDLGTACGKLFKVSFMAITDPGDSDIL 363
+ G N DLGTACGKLF+V +AITD GDSDIL
Sbjct: 76 YAGTNIDLGTACGKLFRVGVLAITDAGDSDIL 107
>sp|P67883|RL30_CHICK 60S ribosomal protein L30
sp|P67884|RL30_OPHHA 60S ribosomal protein L30
Length = 115
Score = 123 bits (308), Expect = 2e-28
Identities = 56/94 (59%), Positives = 74/94 (78%)
Frame = +1
Query: 85 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLARKGIH 264
+I SRL L +K+GKY LG QTLK IR GKA+L+I+A N L KS++EYY+MLA+ G+H
Sbjct: 13 SINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVH 72
Query: 265 HFDGNNTDLGTACGKLFKVSFMAITDPGDSDILK 366
H+ GNN +LGTACGK ++V +AI DPGDSDI++
Sbjct: 73 HYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIR 106
>sp|P62890|RL30_RAT 60S ribosomal protein L30
sp|P62889|RL30_MOUSE 60S ribosomal protein L30
sp|P62888|RL30_HUMAN 60S ribosomal protein L30
sp|Q76KA2|RL30_MACFA 60S ribosomal protein L30
Length = 115
Score = 123 bits (308), Expect = 2e-28
Identities = 56/94 (59%), Positives = 74/94 (78%)
Frame = +1
Query: 85 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLARKGIH 264
+I SRL L +K+GKY LG QTLK IR GKA+L+I+A N L KS++EYY+MLA+ G+H
Sbjct: 13 SINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVH 72
Query: 265 HFDGNNTDLGTACGKLFKVSFMAITDPGDSDILK 366
H+ GNN +LGTACGK ++V +AI DPGDSDI++
Sbjct: 73 HYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIR 106
>sp|Q9LSA3|RL30_ARATH 60S ribosomal protein L30
Length = 112
Score = 122 bits (305), Expect = 4e-28
Identities = 54/93 (58%), Positives = 74/93 (79%)
Frame = +1
Query: 88 IGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLARKGIHH 267
I SRLAL +K+GKY LG LK++RS K +LI+++ N PL +S++EYY+MLA+ G+H
Sbjct: 14 INSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEIEYYAMLAKVGVHR 73
Query: 268 FDGNNTDLGTACGKLFKVSFMAITDPGDSDILK 366
++GNN DLGTACGK F+VS ++I DPGDSDI+K
Sbjct: 74 YNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIK 106
>sp|Q9SDG6|RL30_ORYSA 60S ribosomal protein L30
Length = 111
Score = 120 bits (300), Expect = 1e-27
Identities = 53/94 (56%), Positives = 73/94 (77%)
Frame = +1
Query: 85 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLARKGIH 264
NI ++L L +K+GKY LG L+T+R+ KA+L+I++ N PL KS++EYY+MLA+ +H
Sbjct: 13 NINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKSEIEYYAMLAKVTVH 72
Query: 265 HFDGNNTDLGTACGKLFKVSFMAITDPGDSDILK 366
HF GNN DLGTACGK F+V ++I DPGDSDI+K
Sbjct: 73 HFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIK 106
>sp|O48558|RL30_MAIZE 60S ribosomal protein L30
Length = 112
Score = 120 bits (300), Expect = 1e-27
Identities = 53/94 (56%), Positives = 73/94 (77%)
Frame = +1
Query: 85 NIGSRLALAVKTGKYCLGLNQTLKTIRSGKAELIIVAKNANPLVKSQVEYYSMLARKGIH 264
NI ++L L +K+GKY LG L+T+R+ K++L+I+A N PL KS++EYY+MLA+ +H
Sbjct: 13 NINNKLQLVMKSGKYTLGYKTVLRTLRNSKSKLVIIANNCPPLRKSEIEYYAMLAKVTVH 72
Query: 265 HFDGNNTDLGTACGKLFKVSFMAITDPGDSDILK 366
HF GNN DLGTACGK F+V ++I DPGDSDI+K
Sbjct: 73 HFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIK 106
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,183,019
Number of Sequences: 369166
Number of extensions: 665794
Number of successful extensions: 1800
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1793
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1852449955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)