Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_H15
(119 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P58374|RL30_BRABE 60S ribosomal protein L30 30 1.3
sp|Q9LSA3|RL30_ARATH 60S ribosomal protein L30 30 1.3
sp|P25723|TLD_DROME Dorsal-ventral patterning tolloid prote... 29 3.9
sp|P58375|RL30_SPOFR 60S ribosomal protein L30 28 5.1
sp|Q9SDG6|RL30_ORYSA 60S ribosomal protein L30 28 6.6
sp|P52808|RL30A_SCHPO 60S ribosomal protein L30-1 (L32) 28 6.6
sp|O48558|RL30_MAIZE 60S ribosomal protein L30 28 6.6
>sp|P58374|RL30_BRABE 60S ribosomal protein L30
Length = 114
Score = 30.4 bits (67), Expect = 1.3
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +3
Query: 21 FKVSFMAITDPGDSDILK 74
F+V +AITDPGDSDI++
Sbjct: 86 FRVCTLAITDPGDSDIIR 103
>sp|Q9LSA3|RL30_ARATH 60S ribosomal protein L30
Length = 112
Score = 30.4 bits (67), Expect = 1.3
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +3
Query: 21 FKVSFMAITDPGDSDILK 74
F+VS ++I DPGDSDI+K
Sbjct: 89 FRVSCLSIVDPGDSDIIK 106
>sp|P25723|TLD_DROME Dorsal-ventral patterning tolloid protein precursor
Length = 1067
Score = 28.9 bits (63), Expect = 3.9
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 6 NSARGFKVSFMAITDPGDS 62
NS RGF +SFMA+ P DS
Sbjct: 1014 NSLRGFAISFMAVDPPEDS 1032
>sp|P58375|RL30_SPOFR 60S ribosomal protein L30
Length = 113
Score = 28.5 bits (62), Expect = 5.1
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +3
Query: 21 FKVSFMAITDPGDSDIL 71
++V +AITDPGDSDI+
Sbjct: 89 YRVCTLAITDPGDSDII 105
>sp|Q9SDG6|RL30_ORYSA 60S ribosomal protein L30
Length = 111
Score = 28.1 bits (61), Expect = 6.6
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 21 FKVSFMAITDPGDSDILK 74
F+V ++I DPGDSDI+K
Sbjct: 89 FRVCCLSIIDPGDSDIIK 106
>sp|P52808|RL30A_SCHPO 60S ribosomal protein L30-1 (L32)
Length = 109
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 21 FKVSFMAITDPGDSDIL 71
F+V +AITD GDSDIL
Sbjct: 91 FRVGVLAITDAGDSDIL 107
>sp|O48558|RL30_MAIZE 60S ribosomal protein L30
Length = 112
Score = 28.1 bits (61), Expect = 6.6
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 21 FKVSFMAITDPGDSDILK 74
F+V ++I DPGDSDI+K
Sbjct: 89 FRVCCLSIIDPGDSDIIK 106
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,879,173
Number of Sequences: 369166
Number of extensions: 137492
Number of successful extensions: 326
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 68,354,980
effective HSP length: 13
effective length of database: 65,953,425
effective search space used: 1714789050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)