DrC_00438
- Cluster detail
- GO Category :
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00438 (954 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q5NVM8|RNPS1_PONPY RNA-binding protein with serine-rich ... 95 3e-19 sp|Q6AYK1|RNPS1_RAT RNA-binding protein with serine-rich do... 95 3e-19 sp|Q15414|RBY1A_HUMAN RNA binding motif protein, Y chromoso... 50 1e-05 sp|P30352|SFRS2_CHICK Splicing factor, arginine/serine-rich... 48 5e-05 sp|Q6PDU1|SFRS2_RAT Splicing factor, arginine/serine-rich 2... 48 5e-05 sp|Q5R1W5|SFRS2_PANTR Splicing factor, arginine/serine-rich... 48 5e-05 sp|P38159|HNRPG_HUMAN Heterogeneous nuclear ribonucleoprote... 47 6e-05 sp|Q9V3G3|PPIE_DROME Peptidyl-prolyl cis-trans isomerase E ... 47 6e-05 sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplas... 47 1e-04 sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplast ... 46 1e-04
>sp|Q5NVM8|RNPS1_PONPY RNA-binding protein with serine-rich domain 1 sp|Q4R5N1|RNPS1_MACFA RNA-binding protein with serine-rich domain 1 sp|Q15287|RNPS1_HUMAN RNA-binding protein with serine-rich domain 1 (SR-related protein LDC2) Length = 305 Score = 94.7 bits (234), Expect = 3e-19 Identities = 42/98 (42%), Positives = 67/98 (68%) Frame = +3 Query: 603 KIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIA 782 K+HI +LTRN+T H+ EIFST+G +K +++P +R HP ++G+AY+E+++P A++++ Sbjct: 162 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 221 Query: 783 EMNNGQLDGQEISVVEVPVPRVDHEKDRPRRSSRDRIM 896 M+ GQ+DGQEI+ V P + PRR S R M Sbjct: 222 HMDGGQIDGQEITATAVLAP---WPRPPPRRFSPPRRM 256
>sp|Q6AYK1|RNPS1_RAT RNA-binding protein with serine-rich domain 1 Length = 305 Score = 94.7 bits (234), Expect = 3e-19 Identities = 42/98 (42%), Positives = 67/98 (68%) Frame = +3 Query: 603 KIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIA 782 K+HI +LTRN+T H+ EIFST+G +K +++P +R HP ++G+AY+E+++P A++++ Sbjct: 162 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 221 Query: 783 EMNNGQLDGQEISVVEVPVPRVDHEKDRPRRSSRDRIM 896 M+ GQ+DGQEI+ V P + PRR S R M Sbjct: 222 HMDGGQIDGQEITATAVLAP---WPRPPPRRFSPPRRM 256
>sp|Q15414|RBY1A_HUMAN RNA binding motif protein, Y chromosome, family 1 member A1 (RNA-binding motif protein 1) Length = 496 Score = 49.7 bits (117), Expect = 1e-05 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 1/97 (1%) Frame = +3 Query: 603 KIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIA 782 K+ I L R LK +F G + V + DR +RGFA+I +++PA A+ + Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK--SRGFAFITFENPADAKNAAK 66 Query: 783 EMNNGQLDGQEISVVEVPVPRVDH-EKDRPRRSSRDR 890 +MN L G+ I V + P + RP SSR+R Sbjct: 67 DMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNR 103
>sp|P30352|SFRS2_CHICK Splicing factor, arginine/serine-rich 2 (Splicing factor SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 47.8 bits (112), Expect = 5e-05 Identities = 24/73 (32%), Positives = 41/73 (56%) Frame = +3 Query: 606 IHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIAE 785 + + LT + L+ +F +G V V IP DR+ E +RGFA++ + D A+ ++ Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKE-SRGFAFVRFHDKRDAEDAMDA 74 Query: 786 MNNGQLDGQEISV 824 M+ LDG+E+ V Sbjct: 75 MDGAVLDGRELRV 87
>sp|Q6PDU1|SFRS2_RAT Splicing factor, arginine/serine-rich 2 (Splicing factor SC35) (SC-35) (Splicing component, 35 kDa) sp|Q62093|SFRS2_MOUSE Splicing factor, arginine/serine-rich 2 (Splicing factor SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) sp|Q01130|SFRS2_HUMAN Splicing factor, arginine/serine-rich 2 (Splicing factor SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 47.8 bits (112), Expect = 5e-05 Identities = 24/73 (32%), Positives = 41/73 (56%) Frame = +3 Query: 606 IHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIAE 785 + + LT + L+ +F +G V V IP DR+ E +RGFA++ + D A+ ++ Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKE-SRGFAFVRFHDKRDAEDAMDA 74 Query: 786 MNNGQLDGQEISV 824 M+ LDG+E+ V Sbjct: 75 MDGAVLDGRELRV 87
>sp|Q5R1W5|SFRS2_PANTR Splicing factor, arginine/serine-rich 2 (Splicing factor SC35) (SC-35) (Splicing component, 35 kDa) Length = 221 Score = 47.8 bits (112), Expect = 5e-05 Identities = 24/73 (32%), Positives = 41/73 (56%) Frame = +3 Query: 606 IHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIAE 785 + + LT + L+ +F +G V V IP DR+ E +RGFA++ + D A+ ++ Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKE-SRGFAFVRFHDKRDAEDAMDA 74 Query: 786 MNNGQLDGQEISV 824 M+ LDG+E+ V Sbjct: 75 MDGAVLDGRELRV 87
>sp|P38159|HNRPG_HUMAN Heterogeneous nuclear ribonucleoprotein G (hnRNP G) (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 47.4 bits (111), Expect = 6e-05 Identities = 27/96 (28%), Positives = 45/96 (46%) Frame = +3 Query: 603 KIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIA 782 K+ I L L+ +F +G + V + DR +RGFA++ ++ PA A+ + Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDR-ETNKSRGFAFVTFESPADAKDAAR 67 Query: 783 EMNNGQLDGQEISVVEVPVPRVDHEKDRPRRSSRDR 890 +MN LDG+ I V + P + + P R R Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSR 103
>sp|Q9V3G3|PPIE_DROME Peptidyl-prolyl cis-trans isomerase E (PPIase E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 47.4 bits (111), Expect = 6e-05 Identities = 26/88 (29%), Positives = 46/88 (52%) Frame = +3 Query: 606 IHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIAE 785 I++ L +T L F +G + +++P+D + + +RGFA+IEY+ A +I Sbjct: 8 IYVGGLADEVTERLLNNAFIPFGDIADIQMPAD-YESQRHRGFAFIEYEQSEDAAAAIDN 66 Query: 786 MNNGQLDGQEISVVEVPVPRVDHEKDRP 869 MN+ +L G+ I V RV + +P Sbjct: 67 MNDSELCGRTIRVNLAKPVRVKEDSFKP 94
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B) Length = 291 Score = 46.6 bits (109), Expect = 1e-04 Identities = 28/93 (30%), Positives = 46/93 (49%) Frame = +3 Query: 597 SNKIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQS 776 SN++++ L+ + LKE+FS G+V ++ DR +RGF ++ Y + Sbjct: 206 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGR-SRGFGFVTYSSSKEVNDA 264 Query: 777 IAEMNNGQLDGQEISVVEVPVPRVDHEKDRPRR 875 I +N LDG+ I RV ++RPRR Sbjct: 265 IDSLNGVDLDGRSI--------RVSAAEERPRR 289
Score = 34.3 bits (77), Expect = 0.53
Identities = 20/80 (25%), Positives = 38/80 (47%)
Frame = +3
Query: 603 KIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIA 782
K+ + L ++ A L +F G+V+ VE+ D+ +RGF ++ + +
Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGR-SRGFGFVTMSTKEEVEAAEQ 146
Query: 783 EMNNGQLDGQEISVVEVPVP 842
+ N ++DG+ I V P P
Sbjct: 147 QFNGYEIDGRAIRVNAGPAP 166
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31) Length = 292 Score = 46.2 bits (108), Expect = 1e-04 Identities = 28/93 (30%), Positives = 46/93 (49%) Frame = +3 Query: 597 SNKIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQS 776 SN++++ L+ + LKE+FS G+V ++ DR +RGF ++ Y + Sbjct: 207 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGR-SRGFGFVTYSSAKEVNDA 265 Query: 777 IAEMNNGQLDGQEISVVEVPVPRVDHEKDRPRR 875 I +N LDG+ I RV ++RPRR Sbjct: 266 IDSLNGIDLDGRSI--------RVSAAEERPRR 290
Score = 34.3 bits (77), Expect = 0.53
Identities = 20/80 (25%), Positives = 38/80 (47%)
Frame = +3
Query: 603 KIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIA 782
K+ + L ++ A L +F G+V+ VE+ D+ +RGF ++ + +
Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGR-SRGFGFVTMSTKEEVEAAEQ 147
Query: 783 EMNNGQLDGQEISVVEVPVP 842
+ N ++DG+ I V P P
Sbjct: 148 QFNGYEIDGRAIRVNAGPAP 167
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,497,170
Number of Sequences: 369166
Number of extensions: 1149715
Number of successful extensions: 4476
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4432
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 9856975370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
