Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_I11
(904 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5NVM8|RNPS1_PONPY RNA-binding protein with serine-rich ... 95 3e-19
sp|Q6AYK1|RNPS1_RAT RNA-binding protein with serine-rich do... 95 3e-19
sp|Q15414|RBY1A_HUMAN RNA binding motif protein, Y chromoso... 50 1e-05
sp|P30352|SFRS2_CHICK Splicing factor, arginine/serine-rich... 48 4e-05
sp|Q6PDU1|SFRS2_RAT Splicing factor, arginine/serine-rich 2... 48 4e-05
sp|Q5R1W5|SFRS2_PANTR Splicing factor, arginine/serine-rich... 48 4e-05
sp|P38159|HNRPG_HUMAN Heterogeneous nuclear ribonucleoprote... 47 6e-05
sp|Q9V3G3|PPIE_DROME Peptidyl-prolyl cis-trans isomerase E ... 47 6e-05
sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplas... 47 1e-04
sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplast ... 46 1e-04
>sp|Q5NVM8|RNPS1_PONPY RNA-binding protein with serine-rich domain 1
sp|Q4R5N1|RNPS1_MACFA RNA-binding protein with serine-rich domain 1
sp|Q15287|RNPS1_HUMAN RNA-binding protein with serine-rich domain 1 (SR-related protein
LDC2)
Length = 305
Score = 94.7 bits (234), Expect = 3e-19
Identities = 42/98 (42%), Positives = 67/98 (68%)
Frame = +1
Query: 553 KIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIA 732
K+HI +LTRN+T H+ EIFST+G +K +++P +R HP ++G+AY+E+++P A++++
Sbjct: 162 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 221
Query: 733 EMNNGQLDGQEISVVEVPVPRVDHEKDRPRRSSRDRIM 846
M+ GQ+DGQEI+ V P + PRR S R M
Sbjct: 222 HMDGGQIDGQEITATAVLAP---WPRPPPRRFSPPRRM 256
>sp|Q6AYK1|RNPS1_RAT RNA-binding protein with serine-rich domain 1
Length = 305
Score = 94.7 bits (234), Expect = 3e-19
Identities = 42/98 (42%), Positives = 67/98 (68%)
Frame = +1
Query: 553 KIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIA 732
K+HI +LTRN+T H+ EIFST+G +K +++P +R HP ++G+AY+E+++P A++++
Sbjct: 162 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 221
Query: 733 EMNNGQLDGQEISVVEVPVPRVDHEKDRPRRSSRDRIM 846
M+ GQ+DGQEI+ V P + PRR S R M
Sbjct: 222 HMDGGQIDGQEITATAVLAP---WPRPPPRRFSPPRRM 256
>sp|Q15414|RBY1A_HUMAN RNA binding motif protein, Y chromosome, family 1 member A1
(RNA-binding motif protein 1)
Length = 496
Score = 49.7 bits (117), Expect = 1e-05
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Frame = +1
Query: 553 KIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIA 732
K+ I L R LK +F G + V + DR +RGFA+I +++PA A+ +
Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK--SRGFAFITFENPADAKNAAK 66
Query: 733 EMNNGQLDGQEISVVEVPVPRVDH-EKDRPRRSSRDR 840
+MN L G+ I V + P + RP SSR+R
Sbjct: 67 DMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNR 103
>sp|P30352|SFRS2_CHICK Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa) (PR264 protein)
Length = 221
Score = 47.8 bits (112), Expect = 4e-05
Identities = 24/73 (32%), Positives = 41/73 (56%)
Frame = +1
Query: 556 IHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIAE 735
+ + LT + L+ +F +G V V IP DR+ E +RGFA++ + D A+ ++
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKE-SRGFAFVRFHDKRDAEDAMDA 74
Query: 736 MNNGQLDGQEISV 774
M+ LDG+E+ V
Sbjct: 75 MDGAVLDGRELRV 87
>sp|Q6PDU1|SFRS2_RAT Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa)
sp|Q62093|SFRS2_MOUSE Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa) (PR264 protein)
sp|Q01130|SFRS2_HUMAN Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa) (PR264 protein)
Length = 221
Score = 47.8 bits (112), Expect = 4e-05
Identities = 24/73 (32%), Positives = 41/73 (56%)
Frame = +1
Query: 556 IHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIAE 735
+ + LT + L+ +F +G V V IP DR+ E +RGFA++ + D A+ ++
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKE-SRGFAFVRFHDKRDAEDAMDA 74
Query: 736 MNNGQLDGQEISV 774
M+ LDG+E+ V
Sbjct: 75 MDGAVLDGRELRV 87
>sp|Q5R1W5|SFRS2_PANTR Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa)
Length = 221
Score = 47.8 bits (112), Expect = 4e-05
Identities = 24/73 (32%), Positives = 41/73 (56%)
Frame = +1
Query: 556 IHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIAE 735
+ + LT + L+ +F +G V V IP DR+ E +RGFA++ + D A+ ++
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKE-SRGFAFVRFHDKRDAEDAMDA 74
Query: 736 MNNGQLDGQEISV 774
M+ LDG+E+ V
Sbjct: 75 MDGAVLDGRELRV 87
>sp|P38159|HNRPG_HUMAN Heterogeneous nuclear ribonucleoprotein G (hnRNP G) (RNA-binding
motif protein, X chromosome) (Glycoprotein p43)
Length = 391
Score = 47.4 bits (111), Expect = 6e-05
Identities = 27/96 (28%), Positives = 45/96 (46%)
Frame = +1
Query: 553 KIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIA 732
K+ I L L+ +F +G + V + DR +RGFA++ ++ PA A+ +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDR-ETNKSRGFAFVTFESPADAKDAAR 67
Query: 733 EMNNGQLDGQEISVVEVPVPRVDHEKDRPRRSSRDR 840
+MN LDG+ I V + P + + P R R
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSR 103
>sp|Q9V3G3|PPIE_DROME Peptidyl-prolyl cis-trans isomerase E (PPIase E) (Rotamase E)
(Cyclophilin E) (Cyclophilin 33)
Length = 300
Score = 47.4 bits (111), Expect = 6e-05
Identities = 26/88 (29%), Positives = 46/88 (52%)
Frame = +1
Query: 556 IHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIAE 735
I++ L +T L F +G + +++P+D + + +RGFA+IEY+ A +I
Sbjct: 8 IYVGGLADEVTERLLNNAFIPFGDIADIQMPAD-YESQRHRGFAFIEYEQSEDAAAAIDN 66
Query: 736 MNNGQLDGQEISVVEVPVPRVDHEKDRP 819
MN+ +L G+ I V RV + +P
Sbjct: 67 MNDSELCGRTIRVNLAKPVRVKEDSFKP 94
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)
Length = 291
Score = 46.6 bits (109), Expect = 1e-04
Identities = 28/93 (30%), Positives = 46/93 (49%)
Frame = +1
Query: 547 SNKIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQS 726
SN++++ L+ + LKE+FS G+V ++ DR +RGF ++ Y +
Sbjct: 206 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGR-SRGFGFVTYSSSKEVNDA 264
Query: 727 IAEMNNGQLDGQEISVVEVPVPRVDHEKDRPRR 825
I +N LDG+ I RV ++RPRR
Sbjct: 265 IDSLNGVDLDGRSI--------RVSAAEERPRR 289
Score = 34.3 bits (77), Expect = 0.49
Identities = 20/80 (25%), Positives = 38/80 (47%)
Frame = +1
Query: 553 KIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIA 732
K+ + L ++ A L +F G+V+ VE+ D+ +RGF ++ + +
Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGR-SRGFGFVTMSTKEEVEAAEQ 146
Query: 733 EMNNGQLDGQEISVVEVPVP 792
+ N ++DG+ I V P P
Sbjct: 147 QFNGYEIDGRAIRVNAGPAP 166
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)
Length = 292
Score = 46.2 bits (108), Expect = 1e-04
Identities = 28/93 (30%), Positives = 46/93 (49%)
Frame = +1
Query: 547 SNKIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQS 726
SN++++ L+ + LKE+FS G+V ++ DR +RGF ++ Y +
Sbjct: 207 SNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGR-SRGFGFVTYSSAKEVNDA 265
Query: 727 IAEMNNGQLDGQEISVVEVPVPRVDHEKDRPRR 825
I +N LDG+ I RV ++RPRR
Sbjct: 266 IDSLNGIDLDGRSI--------RVSAAEERPRR 290
Score = 34.3 bits (77), Expect = 0.49
Identities = 20/80 (25%), Positives = 38/80 (47%)
Frame = +1
Query: 553 KIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIA 732
K+ + L ++ A L +F G+V+ VE+ D+ +RGF ++ + +
Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGR-SRGFGFVTMSTKEEVEAAEQ 147
Query: 733 EMNNGQLDGQEISVVEVPVP 792
+ N ++DG+ I V P P
Sbjct: 148 QFNGYEIDGRAIRVNAGPAP 167
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.312 0.130 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,529,544
Number of Sequences: 369166
Number of extensions: 1109567
Number of successful extensions: 3344
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3311
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9126484700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)