Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_D11
(822 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5NVM8|RNPS1_PONPY RNA-binding protein with serine-rich ... 93 1e-18
sp|Q6AYK1|RNPS1_RAT RNA-binding protein with serine-rich do... 93 1e-18
sp|P30352|SFRS2_CHICK Splicing factor, arginine/serine-rich... 48 4e-05
sp|Q6PDU1|SFRS2_RAT Splicing factor, arginine/serine-rich 2... 48 4e-05
sp|Q5R1W5|SFRS2_PANTR Splicing factor, arginine/serine-rich... 48 4e-05
sp|Q9V3G3|PPIE_DROME Peptidyl-prolyl cis-trans isomerase E ... 47 5e-05
sp|P38159|HNRPG_HUMAN Heterogeneous nuclear ribonucleoprote... 46 1e-04
sp|Q15414|RBY1A_HUMAN RNA binding motif protein, Y chromoso... 45 2e-04
sp|Q9W4D2|RNP4F_DROME RNA-binding protein 4F 45 2e-04
sp|P84586|HNRPG_RAT Heterogeneous nuclear ribonucleoprotein... 44 4e-04
>sp|Q5NVM8|RNPS1_PONPY RNA-binding protein with serine-rich domain 1
sp|Q4R5N1|RNPS1_MACFA RNA-binding protein with serine-rich domain 1
sp|Q15287|RNPS1_HUMAN RNA-binding protein with serine-rich domain 1 (SR-related protein
LDC2)
Length = 305
Score = 92.8 bits (229), Expect = 1e-18
Identities = 36/80 (45%), Positives = 60/80 (75%)
Frame = +2
Query: 554 KIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIA 733
K+HI +LTRN+T H+ EIFST+G +K +++P +R HP ++G+AY+E+++P A++++
Sbjct: 162 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 221
Query: 734 EMNNGQLDGQEISVVEVPVP 793
M+ GQ+DGQEI+ V P
Sbjct: 222 HMDGGQIDGQEITATAVLAP 241
>sp|Q6AYK1|RNPS1_RAT RNA-binding protein with serine-rich domain 1
Length = 305
Score = 92.8 bits (229), Expect = 1e-18
Identities = 36/80 (45%), Positives = 60/80 (75%)
Frame = +2
Query: 554 KIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIA 733
K+HI +LTRN+T H+ EIFST+G +K +++P +R HP ++G+AY+E+++P A++++
Sbjct: 162 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 221
Query: 734 EMNNGQLDGQEISVVEVPVP 793
M+ GQ+DGQEI+ V P
Sbjct: 222 HMDGGQIDGQEITATAVLAP 241
>sp|P30352|SFRS2_CHICK Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa) (PR264 protein)
Length = 221
Score = 47.8 bits (112), Expect = 4e-05
Identities = 24/73 (32%), Positives = 41/73 (56%)
Frame = +2
Query: 557 IHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIAE 736
+ + LT + L+ +F +G V V IP DR+ E +RGFA++ + D A+ ++
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKE-SRGFAFVRFHDKRDAEDAMDA 74
Query: 737 MNNGQLDGQEISV 775
M+ LDG+E+ V
Sbjct: 75 MDGAVLDGRELRV 87
>sp|Q6PDU1|SFRS2_RAT Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa)
sp|Q62093|SFRS2_MOUSE Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa) (PR264 protein)
sp|Q01130|SFRS2_HUMAN Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa) (PR264 protein)
Length = 221
Score = 47.8 bits (112), Expect = 4e-05
Identities = 24/73 (32%), Positives = 41/73 (56%)
Frame = +2
Query: 557 IHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIAE 736
+ + LT + L+ +F +G V V IP DR+ E +RGFA++ + D A+ ++
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKE-SRGFAFVRFHDKRDAEDAMDA 74
Query: 737 MNNGQLDGQEISV 775
M+ LDG+E+ V
Sbjct: 75 MDGAVLDGRELRV 87
>sp|Q5R1W5|SFRS2_PANTR Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa)
Length = 221
Score = 47.8 bits (112), Expect = 4e-05
Identities = 24/73 (32%), Positives = 41/73 (56%)
Frame = +2
Query: 557 IHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIAE 736
+ + LT + L+ +F +G V V IP DR+ E +RGFA++ + D A+ ++
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKE-SRGFAFVRFHDKRDAEDAMDA 74
Query: 737 MNNGQLDGQEISV 775
M+ LDG+E+ V
Sbjct: 75 MDGAVLDGRELRV 87
>sp|Q9V3G3|PPIE_DROME Peptidyl-prolyl cis-trans isomerase E (PPIase E) (Rotamase E)
(Cyclophilin E) (Cyclophilin 33)
Length = 300
Score = 47.4 bits (111), Expect = 5e-05
Identities = 26/88 (29%), Positives = 46/88 (52%)
Frame = +2
Query: 557 IHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIAE 736
I++ L +T L F +G + +++P+D + + +RGFA+IEY+ A +I
Sbjct: 8 IYVGGLADEVTERLLNNAFIPFGDIADIQMPAD-YESQRHRGFAFIEYEQSEDAAAAIDN 66
Query: 737 MNNGQLDGQEISVVEVPVPRVDHEKDRP 820
MN+ +L G+ I V RV + +P
Sbjct: 67 MNDSELCGRTIRVNLAKPVRVKEDSFKP 94
>sp|P38159|HNRPG_HUMAN Heterogeneous nuclear ribonucleoprotein G (hnRNP G) (RNA-binding
motif protein, X chromosome) (Glycoprotein p43)
Length = 391
Score = 45.8 bits (107), Expect = 1e-04
Identities = 25/89 (28%), Positives = 43/89 (48%)
Frame = +2
Query: 554 KIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIA 733
K+ I L L+ +F +G + V + DR +RGFA++ ++ PA A+ +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDR-ETNKSRGFAFVTFESPADAKDAAR 67
Query: 734 EMNNGQLDGQEISVVEVPVPRVDHEKDRP 820
+MN LDG+ I V + P + + P
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFESGRRGP 96
>sp|Q15414|RBY1A_HUMAN RNA binding motif protein, Y chromosome, family 1 member A1
(RNA-binding motif protein 1)
Length = 496
Score = 45.4 bits (106), Expect = 2e-04
Identities = 26/80 (32%), Positives = 40/80 (50%)
Frame = +2
Query: 554 KIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIA 733
K+ I L R LK +F G + V + DR +RGFA+I +++PA A+ +
Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK--SRGFAFITFENPADAKNAAK 66
Query: 734 EMNNGQLDGQEISVVEVPVP 793
+MN L G+ I V + P
Sbjct: 67 DMNGKSLHGKAIKVEQAKKP 86
>sp|Q9W4D2|RNP4F_DROME RNA-binding protein 4F
Length = 941
Score = 45.4 bits (106), Expect = 2e-04
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +2
Query: 551 NKIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSI 730
NKI + L + L E+FS +G++K V + + + +F +G AY+E++ P AQ+++
Sbjct: 724 NKIFVRNLHPACSKEELHELFSPFGTIKDVRLVH-KLNKQF-KGIAYVEFEKPGEAQRAV 781
Query: 731 AEMNNGQLDGQEISV-VEVPVPR 796
A + G ISV + P PR
Sbjct: 782 AGRDGCLFKGMNISVAISNPPPR 804
>sp|P84586|HNRPG_RAT Heterogeneous nuclear ribonucleoprotein G (hnRNP G) (RNA-binding
motif protein, X chromosome)
Length = 388
Score = 44.3 bits (103), Expect = 4e-04
Identities = 24/89 (26%), Positives = 42/89 (47%)
Frame = +2
Query: 554 KIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIA 733
K+ I L L+ +F +G + + + DR +RGFA++ ++ PA A+
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDR-ETNKSRGFAFVTFESPADAKDVAR 67
Query: 734 EMNNGQLDGQEISVVEVPVPRVDHEKDRP 820
+MN LDG+ I V + P + + P
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFESGRRGP 96
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,259,178
Number of Sequences: 369166
Number of extensions: 896813
Number of successful extensions: 3819
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3775
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7907893860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)