Planarian EST Database


Dr_sW_002_D11

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_002_D11
         (822 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5NVM8|RNPS1_PONPY  RNA-binding protein with serine-rich ...    93   1e-18
sp|Q6AYK1|RNPS1_RAT  RNA-binding protein with serine-rich do...    93   1e-18
sp|P30352|SFRS2_CHICK  Splicing factor, arginine/serine-rich...    48   4e-05
sp|Q6PDU1|SFRS2_RAT  Splicing factor, arginine/serine-rich 2...    48   4e-05
sp|Q5R1W5|SFRS2_PANTR  Splicing factor, arginine/serine-rich...    48   4e-05
sp|Q9V3G3|PPIE_DROME  Peptidyl-prolyl cis-trans isomerase E ...    47   5e-05
sp|P38159|HNRPG_HUMAN  Heterogeneous nuclear ribonucleoprote...    46   1e-04
sp|Q15414|RBY1A_HUMAN  RNA binding motif protein, Y chromoso...    45   2e-04
sp|Q9W4D2|RNP4F_DROME  RNA-binding protein 4F                      45   2e-04
sp|P84586|HNRPG_RAT  Heterogeneous nuclear ribonucleoprotein...    44   4e-04
>sp|Q5NVM8|RNPS1_PONPY RNA-binding protein with serine-rich domain 1
 sp|Q4R5N1|RNPS1_MACFA RNA-binding protein with serine-rich domain 1
 sp|Q15287|RNPS1_HUMAN RNA-binding protein with serine-rich domain 1 (SR-related protein
           LDC2)
          Length = 305

 Score = 92.8 bits (229), Expect = 1e-18
 Identities = 36/80 (45%), Positives = 60/80 (75%)
 Frame = +2

Query: 554 KIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIA 733
           K+HI +LTRN+T  H+ EIFST+G +K +++P +R HP  ++G+AY+E+++P  A++++ 
Sbjct: 162 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 221

Query: 734 EMNNGQLDGQEISVVEVPVP 793
            M+ GQ+DGQEI+   V  P
Sbjct: 222 HMDGGQIDGQEITATAVLAP 241
>sp|Q6AYK1|RNPS1_RAT RNA-binding protein with serine-rich domain 1
          Length = 305

 Score = 92.8 bits (229), Expect = 1e-18
 Identities = 36/80 (45%), Positives = 60/80 (75%)
 Frame = +2

Query: 554 KIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIA 733
           K+HI +LTRN+T  H+ EIFST+G +K +++P +R HP  ++G+AY+E+++P  A++++ 
Sbjct: 162 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 221

Query: 734 EMNNGQLDGQEISVVEVPVP 793
            M+ GQ+DGQEI+   V  P
Sbjct: 222 HMDGGQIDGQEITATAVLAP 241
>sp|P30352|SFRS2_CHICK Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
           (SC-35) (Splicing component, 35 kDa) (PR264 protein)
          Length = 221

 Score = 47.8 bits (112), Expect = 4e-05
 Identities = 24/73 (32%), Positives = 41/73 (56%)
 Frame = +2

Query: 557 IHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIAE 736
           + +  LT   +   L+ +F  +G V  V IP DR+  E +RGFA++ + D   A+ ++  
Sbjct: 16  LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKE-SRGFAFVRFHDKRDAEDAMDA 74

Query: 737 MNNGQLDGQEISV 775
           M+   LDG+E+ V
Sbjct: 75  MDGAVLDGRELRV 87
>sp|Q6PDU1|SFRS2_RAT Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
           (SC-35) (Splicing component, 35 kDa)
 sp|Q62093|SFRS2_MOUSE Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
           (SC-35) (Splicing component, 35 kDa) (PR264 protein)
 sp|Q01130|SFRS2_HUMAN Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
           (SC-35) (Splicing component, 35 kDa) (PR264 protein)
          Length = 221

 Score = 47.8 bits (112), Expect = 4e-05
 Identities = 24/73 (32%), Positives = 41/73 (56%)
 Frame = +2

Query: 557 IHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIAE 736
           + +  LT   +   L+ +F  +G V  V IP DR+  E +RGFA++ + D   A+ ++  
Sbjct: 16  LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKE-SRGFAFVRFHDKRDAEDAMDA 74

Query: 737 MNNGQLDGQEISV 775
           M+   LDG+E+ V
Sbjct: 75  MDGAVLDGRELRV 87
>sp|Q5R1W5|SFRS2_PANTR Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
           (SC-35) (Splicing component, 35 kDa)
          Length = 221

 Score = 47.8 bits (112), Expect = 4e-05
 Identities = 24/73 (32%), Positives = 41/73 (56%)
 Frame = +2

Query: 557 IHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIAE 736
           + +  LT   +   L+ +F  +G V  V IP DR+  E +RGFA++ + D   A+ ++  
Sbjct: 16  LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKE-SRGFAFVRFHDKRDAEDAMDA 74

Query: 737 MNNGQLDGQEISV 775
           M+   LDG+E+ V
Sbjct: 75  MDGAVLDGRELRV 87
>sp|Q9V3G3|PPIE_DROME Peptidyl-prolyl cis-trans isomerase E (PPIase E) (Rotamase E)
           (Cyclophilin E) (Cyclophilin 33)
          Length = 300

 Score = 47.4 bits (111), Expect = 5e-05
 Identities = 26/88 (29%), Positives = 46/88 (52%)
 Frame = +2

Query: 557 IHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIAE 736
           I++  L   +T   L   F  +G +  +++P+D +  + +RGFA+IEY+    A  +I  
Sbjct: 8   IYVGGLADEVTERLLNNAFIPFGDIADIQMPAD-YESQRHRGFAFIEYEQSEDAAAAIDN 66

Query: 737 MNNGQLDGQEISVVEVPVPRVDHEKDRP 820
           MN+ +L G+ I V      RV  +  +P
Sbjct: 67  MNDSELCGRTIRVNLAKPVRVKEDSFKP 94
>sp|P38159|HNRPG_HUMAN Heterogeneous nuclear ribonucleoprotein G (hnRNP G) (RNA-binding
           motif protein, X chromosome) (Glycoprotein p43)
          Length = 391

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 25/89 (28%), Positives = 43/89 (48%)
 Frame = +2

Query: 554 KIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIA 733
           K+ I  L        L+ +F  +G +  V +  DR     +RGFA++ ++ PA A+ +  
Sbjct: 9   KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDR-ETNKSRGFAFVTFESPADAKDAAR 67

Query: 734 EMNNGQLDGQEISVVEVPVPRVDHEKDRP 820
           +MN   LDG+ I V +   P  +  +  P
Sbjct: 68  DMNGKSLDGKAIKVEQATKPSFESGRRGP 96
>sp|Q15414|RBY1A_HUMAN RNA binding motif protein, Y chromosome, family 1 member A1
           (RNA-binding motif protein 1)
          Length = 496

 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 26/80 (32%), Positives = 40/80 (50%)
 Frame = +2

Query: 554 KIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIA 733
           K+ I  L R      LK +F   G +  V +  DR     +RGFA+I +++PA A+ +  
Sbjct: 9   KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK--SRGFAFITFENPADAKNAAK 66

Query: 734 EMNNGQLDGQEISVVEVPVP 793
           +MN   L G+ I V +   P
Sbjct: 67  DMNGKSLHGKAIKVEQAKKP 86
>sp|Q9W4D2|RNP4F_DROME RNA-binding protein 4F
          Length = 941

 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
 Frame = +2

Query: 551 NKIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSI 730
           NKI +  L    +   L E+FS +G++K V +   + + +F +G AY+E++ P  AQ+++
Sbjct: 724 NKIFVRNLHPACSKEELHELFSPFGTIKDVRLVH-KLNKQF-KGIAYVEFEKPGEAQRAV 781

Query: 731 AEMNNGQLDGQEISV-VEVPVPR 796
           A  +     G  ISV +  P PR
Sbjct: 782 AGRDGCLFKGMNISVAISNPPPR 804
>sp|P84586|HNRPG_RAT Heterogeneous nuclear ribonucleoprotein G (hnRNP G) (RNA-binding
           motif protein, X chromosome)
          Length = 388

 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 24/89 (26%), Positives = 42/89 (47%)
 Frame = +2

Query: 554 KIHITKLTRNITMAHLKEIFSTWGSVKHVEIPSDRFHPEFNRGFAYIEYDDPASAQQSIA 733
           K+ I  L        L+ +F  +G +  + +  DR     +RGFA++ ++ PA A+    
Sbjct: 9   KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDR-ETNKSRGFAFVTFESPADAKDVAR 67

Query: 734 EMNNGQLDGQEISVVEVPVPRVDHEKDRP 820
           +MN   LDG+ I V +   P  +  +  P
Sbjct: 68  DMNGKSLDGKAIKVEQATKPSFESGRRGP 96
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,259,178
Number of Sequences: 369166
Number of extensions: 896813
Number of successful extensions: 3819
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3775
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7907893860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)