Planarian EST Database

DrC_00429

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00429 ATAAACGAAAGTATGAACGCAAGAAAGAAGAAAAGAAGATACAAGAGAGACAGGAAAGAG TTCGACGTGCTCAAGAGGAGCATGAAAAGGCAAAAAAGGCCAGTAGTCAACAACAGAAAC ATTGCAATTCAACTTGTGGAGATAATTGTGGCGAAGGATCTGGATTTGGAGGAATACCAA GTGGTCTTGGAGATTTATTTAATGATCCGGAGTTGGTGGAGGATCTTAAAGATCCAGAAG TTATGAAAGCTTTGACTGAAGTGATTACTAATCCAGCAGCGTTGTTGAAATACCAAAACA ATCCGAAAGTAGCCAAAATTATTAAAAAGATGCAAAGCAAATTTGGTGGAGCAGCTGGTC CCATGGATTTTGAGTCGTCACCTCCGCCACCAACCAAACCTGCCGCCACGTGTGATGATT TGGATTAGAATAGAATGTGTGTACGTGTTAATTGGTTACTGTATTTGAATAAATAAAATA CGAATTTTTTCGGG

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00429
         (494 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P50502|F10A1_HUMAN  Hsc70-interacting protein (Hip) (Puta...    63   4e-10
sp|Q5RF31|F10A1_PONPY  Hsc70-interacting protein (Hip) (Prot...    63   4e-10
sp|P50503|F10A1_RAT  Hsc70-interacting protein (Hip) (Protei...    62   6e-10
sp|Q8NFI4|F10A5_HUMAN  Protein FAM10A5                             62   7e-10
sp|Q5ZLF0|F10A1_CHICK  Hsc70-interacting protein (Hip) (Prot...    61   1e-09
sp|Q99L47|F10A1_MOUSE  Hsc70-interacting protein (Hip) (Prot...    60   2e-09
sp|Q9USI5|STI1_SCHPO  Heat shock protein sti1 homolog              37   0.019
sp|P15705|STI1_YEAST  Heat shock protein STI1                      35   0.074
sp|Q08168|HRP_PLABE  58 kDa phosphoprotein (Heat shock-relat...    35   0.097
sp|Q60864|STIP1_MOUSE  Stress-induced-phosphoprotein 1 (STI1...    32   0.82

>sp|P50502|F10A1_HUMAN Hsc70-interacting protein (Hip) (Putative tumor suppressor ST13)
           (Protein FAM10A1) (Progesterone receptor-associated p48
           protein)
          Length = 369

 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 27/55 (49%), Positives = 40/55 (72%)
 Frame = +3

Query: 192 DLFNDPELVEDLKDPEVMKALTEVITNPAALLKYQNNPKVAKIIKKMQSKFGGAA 356
           ++ +DPE++  ++DPEVM A  +V  NPA + KYQ+NPKV  +I K+ +KFGG A
Sbjct: 315 EILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGGQA 369

>sp|Q5RF31|F10A1_PONPY Hsc70-interacting protein (Hip) (Protein ST13 homolog) (Protein
           FAM10A1)
          Length = 369

 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 27/55 (49%), Positives = 40/55 (72%)
 Frame = +3

Query: 192 DLFNDPELVEDLKDPEVMKALTEVITNPAALLKYQNNPKVAKIIKKMQSKFGGAA 356
           ++ +DPE++  ++DPEVM A  +V  NPA + KYQ+NPKV  +I K+ +KFGG A
Sbjct: 315 EILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGGQA 369

>sp|P50503|F10A1_RAT Hsc70-interacting protein (Hip) (Protein ST13 homolog) (Protein
           FAM10A1)
          Length = 368

 Score = 62.4 bits (150), Expect = 6e-10
 Identities = 26/53 (49%), Positives = 39/53 (73%)
 Frame = +3

Query: 192 DLFNDPELVEDLKDPEVMKALTEVITNPAALLKYQNNPKVAKIIKKMQSKFGG 350
           ++ +DPE++  ++DPEVM A  +V  NP+ + KYQNNPKV  +I K+ +KFGG
Sbjct: 314 EILSDPEVLAAMQDPEVMVAFQDVAQNPSNMSKYQNNPKVMNLISKLSAKFGG 366

>sp|Q8NFI4|F10A5_HUMAN Protein FAM10A5
          Length = 369

 Score = 62.0 bits (149), Expect = 7e-10
 Identities = 27/55 (49%), Positives = 39/55 (70%)
 Frame = +3

Query: 192 DLFNDPELVEDLKDPEVMKALTEVITNPAALLKYQNNPKVAKIIKKMQSKFGGAA 356
           ++ +DPE +  ++DPEVM A  +V  NPA + KYQ+NPKV  +I K+ +KFGG A
Sbjct: 315 EILSDPEALAAMQDPEVMVAFQDVAQNPANMSKYQSNPKVMNLISKLSAKFGGQA 369

>sp|Q5ZLF0|F10A1_CHICK Hsc70-interacting protein (Hip) (Protein ST13 homolog) (Protein
           FAM10A1)
          Length = 361

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 26/52 (50%), Positives = 38/52 (73%)
 Frame = +3

Query: 192 DLFNDPELVEDLKDPEVMKALTEVITNPAALLKYQNNPKVAKIIKKMQSKFG 347
           ++ +DPE++  ++DPEVM A  +V  NPA + KYQNNPKV  +I K+ +KFG
Sbjct: 307 EILSDPEVLAAMQDPEVMAAFQDVAQNPANMSKYQNNPKVMSLITKLSAKFG 358

>sp|Q99L47|F10A1_MOUSE Hsc70-interacting protein (Hip) (Protein ST13 homolog) (Protein
           FAM10A1)
          Length = 371

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 25/53 (47%), Positives = 39/53 (73%)
 Frame = +3

Query: 192 DLFNDPELVEDLKDPEVMKALTEVITNPAALLKYQNNPKVAKIIKKMQSKFGG 350
           ++ +DPE++  ++DPEVM A  +V  NP+ + KYQ+NPKV  +I K+ +KFGG
Sbjct: 317 EILSDPEVLAAMQDPEVMVAFQDVAQNPSNMSKYQSNPKVMNLISKLSAKFGG 369

>sp|Q9USI5|STI1_SCHPO Heat shock protein sti1 homolog
          Length = 591

 Score = 37.4 bits (85), Expect = 0.019
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = +3

Query: 204 DPELVEDLKDPEVMKALTEVITNPAALLKYQNNPKVAKIIKKM 332
           DPE++  L+DP +   L +   NPAAL+++  NP V   I+K+
Sbjct: 540 DPEVLGILQDPAMQAILGQARENPAALMEHMKNPTVKSKIEKL 582


 Score = 29.3 bits (64), Expect = 5.3
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 195 LFNDPELVEDLKDPEVMKALTEVITNPAALLKYQNNPKVAKII 323
           L ++PE    L D   M  L ++  NP +++   N+P++ K+I
Sbjct: 146 LASNPETASLLADSAFMAKLQKIQQNPGSIMAELNDPRMMKVI 188

>sp|P15705|STI1_YEAST Heat shock protein STI1
          Length = 589

 Score = 35.4 bits (80), Expect = 0.074
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +3

Query: 204 DPELVEDLKDPEVMKALTEVITNPAALLKYQNNPKVAKIIKKM 332
           DPE+   ++DP +   L +   NPAAL ++  NP+V K I+ +
Sbjct: 537 DPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPEVFKKIQTL 579

>sp|Q08168|HRP_PLABE 58 kDa phosphoprotein (Heat shock-related protein) (HRP)
          Length = 423

 Score = 35.0 bits (79), Expect = 0.097
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 201 NDPELVEDLKDPEVMKALTEVITNPAALLKYQNNPKVAKIIKKMQ-SKFGGAAG 359
           N PE+ E   +P+  + +  +++NP  + KY ++PK   I + ++ S  GG  G
Sbjct: 365 NSPEMKELFNNPQFFQMMQNMMSNPDLINKYASDPKYKNIFENLKNSDLGGMMG 418

>sp|Q60864|STIP1_MOUSE Stress-induced-phosphoprotein 1 (STI1) (Hsc70/Hsp90-organizing
           protein) (Hop) (mSTI1)
          Length = 543

 Score = 32.0 bits (71), Expect = 0.82
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = +3

Query: 204 DPELVEDLKDPEVMKALTEVITNPAALLKYQNNPKVAKIIKKM 332
           DPE+ + + DP +   L ++  +P AL ++  NP +A+ I+K+
Sbjct: 492 DPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKL 534

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,850,639
Number of Sequences: 369166
Number of extensions: 729745
Number of successful extensions: 2302
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2301
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3069744620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00429

Planaria EST Database

DrC_00429

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail