Planaria EST Database

DrC_00419

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00419
         (356 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6FL35|SMI1_CANGA  KNR4/SMI1 homolog                            31   0.76 
sp|Q601G9|TIG_MYCH2  Trigger factor (TF)                           30   1.7  
sp|Q9Y581|INSL6_HUMAN  Insulin-like peptide INSL6 precursor ...    30   2.2  
sp|Q02952|AKA12_HUMAN  A-kinase anchor protein 12 (A-kinase ...    30   2.2  

>sp|Q6FL35|SMI1_CANGA KNR4/SMI1 homolog
          Length = 584

 Score = 31.2 bits (69), Expect = 0.76
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 46  PKTENEVKENVEAPVTTEHIEAVNAEKVETAPEAEPKEN 162
           P  E E   NVEAP   E  ++  AE  ET  +++ K+N
Sbjct: 518 PIEEEEESTNVEAPQVEEEEDSTTAEPAETVSKSKKKKN 556

>sp|Q601G9|TIG_MYCH2 Trigger factor (TF)
          Length = 465

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 1   YK*FKMGNKSGKFEVPKTENEVKENVEAPVTTEHIEAVNAEKVETAPEAE 150
           Y+     NK  +F V    N++KEN  A +T E + ++  + VET  + E
Sbjct: 223 YQVHTYANKKARFRVKI--NKIKENQPAKLTNEFVASLKIQNVETISQLE 270

>sp|Q9Y581|INSL6_HUMAN Insulin-like peptide INSL6 precursor (Insulin-like peptide 6)
           (Relaxin/insulin-like factor 1) [Contains: Insulin-like
           peptide INSL6 B chain; Insulin-like peptide INSL6 A
           chain]
          Length = 213

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +1

Query: 34  KFEVPKTENEVKENVEAPVTTEHIEAVNAEKVETAPEAEPKE 159
           +FE P+T +  +     PV+T   EAVN+ ++++ PE + K+
Sbjct: 79  QFESPQTASPARGRGTNPVSTSWEEAVNSWEMQSLPEYKDKK 120

>sp|Q02952|AKA12_HUMAN A-kinase anchor protein 12 (A-kinase anchor protein 250 kDa) (AKAP
           250) (Myasthenia gravis autoantigen gravin)
          Length = 1781

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 274 GVFGWLKKISFRKDKKQKANADETNEE 354
           G  GW KK SFRK K+ +  A E  +E
Sbjct: 302 GWAGWRKKTSFRKPKEDEVEASEKKKE 328

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.309    0.127    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,516,407
Number of Sequences: 369166
Number of extensions: 180018
Number of successful extensions: 624
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 68,354,980
effective HSP length: 86
effective length of database: 52,467,770
effective search space used: 1678968640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)

Cluster detail

DrC_00419

  1. Dr_sW_018_O12
  2. Dr_sW_011_D12