Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_O12
(136 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38845|YHU6_YEAST Hypothetical 51.1 kDa protein in DCD1-... 29 3.8
sp|P20504|RPO1_VACCC DNA-directed RNA polymerase 147 kDa po... 28 6.5
sp|O57204|RPO1_VACCA DNA-directed RNA polymerase 147 kDa po... 28 6.5
sp|P07392|RPO1_VACCV DNA-directed RNA polymerase 147 kDa po... 28 6.5
>sp|P38845|YHU6_YEAST Hypothetical 51.1 kDa protein in DCD1-MRPL6 intergenic region
Length = 465
Score = 28.9 bits (63), Expect = 3.8
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +1
Query: 4 VPAPVTTEHIEAVNAEKVETAPEAEPKENGDAAESKEVAENVEE 135
VP PV +E+ EK P+A+ E+KEVA NV+E
Sbjct: 254 VPEPVAGPIVESSVTEKSPALPQADDP----IVETKEVAHNVQE 293
>sp|P20504|RPO1_VACCC DNA-directed RNA polymerase 147 kDa polypeptide
Length = 1286
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 1 LVPAPVTTEHIEAVNAEKVETAPEAEPKENGDAAESKEV 117
L P T +EA+N EK+E EA K D + K V
Sbjct: 581 LRPNSTFTNKLEAINVEKIELIKEAYAKYLNDVRDGKIV 619
>sp|O57204|RPO1_VACCA DNA-directed RNA polymerase 147 kDa polypeptide
Length = 1286
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 1 LVPAPVTTEHIEAVNAEKVETAPEAEPKENGDAAESKEV 117
L P T +EA+N EK+E EA K D + K V
Sbjct: 581 LRPNSTFTNKLEAINVEKIELIKEAYAKYLNDVRDGKIV 619
>sp|P07392|RPO1_VACCV DNA-directed RNA polymerase 147 kDa polypeptide
Length = 1287
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 1 LVPAPVTTEHIEAVNAEKVETAPEAEPKENGDAAESKEV 117
L P T +EA+N EK+E EA K D + K V
Sbjct: 581 LRPNSTFTNKLEAINVEKIELIKEAYAKYLNDVRDGKIV 619
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.292 0.114 0.289
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,521,547
Number of Sequences: 369166
Number of extensions: 83912
Number of successful extensions: 307
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 68,354,980
effective HSP length: 18
effective length of database: 65,029,750
effective search space used: 1690773500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.7 bits)